Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:56:08 (4042910): wrapper (7.7.26015): starting
15:56:08 (4042910): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 15:56:08] Arguments: --nthreads 8
[2025-11-23 15:56:08] Threads: 8
[2025-11-23 15:56:08] Checking for CVMFS
[2025-11-23 15:56:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 15:56:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 15:56:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 15:56:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 15:56:09] 2.13.2.0 6926 27515 232168 153220 1 396 31058884 40960000 25983 16776704 0 141374340 99.678 112505174 38613 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 15:56:09] CVMFS is ok
[2025-11-23 15:56:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 15:56:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 15:56:09] Further information can be found at the LHC@home message board.
[2025-11-23 15:56:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 15:56:09] Checking for apptainer binary...
[2025-11-23 15:56:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 15:56:09] Running /usr/bin/apptainer --version
[2025-11-23 15:56:09] apptainer version 1.4.4-1.el9
[2025-11-23 15:56:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 15:56:10] c-212-11.aglt2.org
[2025-11-23 15:56:10] apptainer works
[2025-11-23 15:56:10] Set ATHENA_PROC_NUMBER=8
[2025-11-23 15:56:10] Set ATHENA_CORE_NUMBER=8
[2025-11-23 15:56:10] Starting ATLAS job with PandaID=6895330929
[2025-11-23 15:56:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 18:32:26]  *** The last 200 lines of the pilot log: ***
[2025-11-24 18:32:26] 2025-11-24 23:31:07,678 | INFO     | executing command: lscpu
[2025-11-24 18:32:26] 2025-11-24 23:31:07,751 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-24 18:32:26] 2025-11-24 23:31:08,193 | INFO     | time since job start (95677s) is within the limit (172800.0s)
[2025-11-24 18:32:26] 2025-11-24 23:31:10,172 | INFO     | monitor loop #6141: job 0:6895330929 is in state 'finished'
[2025-11-24 18:32:26] 2025-11-24 23:31:10,172 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 18:32:26] 2025-11-24 23:31:10,200 | INFO     | time since job start (95679s) is within the limit (172800.0s)
[2025-11-24 18:32:26] 2025-11-24 23:31:12,207 | INFO     | time since job start (95681s) is within the limit (172800.0s)
[2025-11-24 18:32:26] 2025-11-24 23:31:12,677 | INFO     | monitor loop #6142: job 0:6895330929 is in state 'finished'
[2025-11-24 18:32:26] 2025-11-24 23:31:12,677 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 18:32:26] 2025-11-24 23:31:14,576 | INFO     | PID=4046583 has CPU usage=14.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-24 18:32:26] 2025-11-24 23:31:14,577 | INFO     | .. there are 25 such processes running
[2025-11-24 18:32:26] 2025-11-24 23:31:15,200 | INFO     | monitor loop #6143: job 0:6895330929 is in state 'finished'
[2025-11-24 18:32:26] 2025-11-24 23:31:15,200 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 18:32:26] 2025-11-24 23:31:15,579 | INFO     | time since job start (95684s) is within the limit (172800.0s)
[2025-11-24 18:32:26] 2025-11-24 23:31:17,586 | INFO     | time since job start (95686s) is within the limit (172800.0s)
[2025-11-24 18:32:26] 2025-11-24 23:31:17,705 | INFO     | monitor loop #6144: job 0:6895330929 is in state 'finished'
[2025-11-24 18:32:26] 2025-11-24 23:31:17,705 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 18:32:26] 2025-11-24 23:31:18,653 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 18:32:26] 2025-11-24 23:31:18,660 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2953.5980833333338
[2025-11-24 18:32:26] 2025-11-24 23:31:18,676 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895330929/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 18:32:26] 2025-11-24 23:31:18,677 | INFO     | extracted standard info from prmon json
[2025-11-24 18:32:26] 2025-11-24 23:31:18,677 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 18:32:26] 2025-11-24 23:31:18,677 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 18:32:26] 2025-11-24 23:31:18,754 | INFO     | fitting pss+swap vs Time
[2025-11-24 18:32:26] 2025-11-24 23:31:18,773 | INFO     | sum of square deviations: 1195353774039.3462
[2025-11-24 18:32:26] 2025-11-24 23:31:18,819 | INFO     | sum of deviations: 4956546874974.638
[2025-11-24 18:32:26] 2025-11-24 23:31:18,819 | INFO     | mean x: 1763979232.0204082
[2025-11-24 18:32:26] 2025-11-24 23:31:18,819 | INFO     | mean y: 2847604.855229592
[2025-11-24 18:32:26] 2025-11-24 23:31:18,819 | INFO     | intersect: -7311510654.495632
[2025-11-24 18:32:26] 2025-11-24 23:31:18,821 | INFO     | chi2: 35.376973815381625
[2025-11-24 18:32:26] 2025-11-24 23:31:18,822 | INFO     | sum of square deviations: 1183955733077.4824
[2025-11-24 18:32:26] 2025-11-24 23:31:18,867 | INFO     | sum of deviations: 5512643146457.922
[2025-11-24 18:32:26] 2025-11-24 23:31:18,868 | INFO     | mean x: 1763979079.528471
[2025-11-24 18:32:26] 2025-11-24 23:31:18,868 | INFO     | mean y: 2855043.507357646
[2025-11-24 18:32:26] 2025-11-24 23:31:18,868 | INFO     | intersect: -8210447964.014287
[2025-11-24 18:32:26] 2025-11-24 23:31:18,869 | INFO     | chi2: 31.554493335821746
[2025-11-24 18:32:26] 2025-11-24 23:31:18,869 | INFO     | current chi2=31.554493335821746 (change=10.804995643516277 %)
[2025-11-24 18:32:26] 2025-11-24 23:31:18,869 | INFO     | right removable region: 1562
[2025-11-24 18:32:26] 2025-11-24 23:31:18,871 | INFO     | sum of square deviations: 1183953322357.4812
[2025-11-24 18:32:26] 2025-11-24 23:31:18,919 | INFO     | sum of deviations: 4352733930650.3716
[2025-11-24 18:32:26] 2025-11-24 23:31:18,919 | INFO     | mean x: 1763979384.528471
[2025-11-24 18:32:26] 2025-11-24 23:31:18,919 | INFO     | mean y: 2855681.0927703134
[2025-11-24 18:32:26] 2025-11-24 23:31:18,920 | INFO     | intersect: -6482309548.830466
[2025-11-24 18:32:26] 2025-11-24 23:31:18,921 | INFO     | chi2: 31.51356617899937
[2025-11-24 18:32:26] 2025-11-24 23:31:18,921 | INFO     | current chi2=31.51356617899937 (change=10.920684331406767 %)
[2025-11-24 18:32:26] 2025-11-24 23:31:18,921 | INFO     | left removable region: 10
[2025-11-24 18:32:26] 2025-11-24 23:31:18,922 | INFO     | sum of square deviations: 1159130794684.662
[2025-11-24 18:32:26] 2025-11-24 23:31:18,965 | INFO     | sum of deviations: 4508028935510.027
[2025-11-24 18:32:26] 2025-11-24 23:31:18,965 | INFO     | mean x: 1763979354.0463917
[2025-11-24 18:32:26] 2025-11-24 23:31:18,965 | INFO     | mean y: 2871354.9162371135
[2025-11-24 18:32:26] 2025-11-24 23:31:18,965 | INFO     | intersect: -6857501957.697511
[2025-11-24 18:32:26] 2025-11-24 23:31:18,967 | INFO     | chi2: 24.471519022171325
[2025-11-24 18:32:26] 2025-11-24 23:31:18,967 | INFO     | current memory leak: 3.89 B/s (using 1552 data points, chi2=24.47)
[2025-11-24 18:32:26] 2025-11-24 23:31:18,968 | INFO     | could have reported an average CPU frequency of 3033 MHz (56 samples)
[2025-11-24 18:32:26] 2025-11-24 23:31:18,968 | INFO     | ..............................
[2025-11-24 18:32:26] 2025-11-24 23:31:18,968 | INFO     | . Timing measurements:
[2025-11-24 18:32:26] 2025-11-24 23:31:18,968 | INFO     | . get job = 0 s
[2025-11-24 18:32:26] 2025-11-24 23:31:18,968 | INFO     | . initial setup = 3 s
[2025-11-24 18:32:26] 2025-11-24 23:31:18,968 | INFO     | . payload setup = 15 s
[2025-11-24 18:32:26] 2025-11-24 23:31:18,968 | INFO     | . stage-in = 0 s
[2025-11-24 18:32:26] 2025-11-24 23:31:18,968 | INFO     | . payload execution = 95627 s
[2025-11-24 18:32:26] 2025-11-24 23:31:18,968 | INFO     | . stage-out = 5 s
[2025-11-24 18:32:26] 2025-11-24 23:31:18,968 | INFO     | . log creation = 1 s
[2025-11-24 18:32:26] 2025-11-24 23:31:18,969 | INFO     | ..............................
[2025-11-24 18:32:26] 2025-11-24 23:31:19,046 | INFO     | 
[2025-11-24 18:32:26] 2025-11-24 23:31:19,047 | INFO     | job summary report
[2025-11-24 18:32:26] 2025-11-24 23:31:19,047 | INFO     | --------------------------------------------------
[2025-11-24 18:32:26] 2025-11-24 23:31:19,047 | INFO     | PanDA job id: 6895330929
[2025-11-24 18:32:26] 2025-11-24 23:31:19,047 | INFO     | task id: 47556137
[2025-11-24 18:32:26] 2025-11-24 23:31:19,047 | INFO     | errors: (none)
[2025-11-24 18:32:26] 2025-11-24 23:31:19,047 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 18:32:26] 2025-11-24 23:31:19,047 | INFO     | pilot state: finished 
[2025-11-24 18:32:26] 2025-11-24 23:31:19,048 | INFO     | transexitcode: 0
[2025-11-24 18:32:26] 2025-11-24 23:31:19,048 | INFO     | exeerrorcode: 0
[2025-11-24 18:32:26] 2025-11-24 23:31:19,048 | INFO     | exeerrordiag: 
[2025-11-24 18:32:26] 2025-11-24 23:31:19,048 | INFO     | exitcode: 0
[2025-11-24 18:32:26] 2025-11-24 23:31:19,048 | INFO     | exitmsg: OK
[2025-11-24 18:32:26] 2025-11-24 23:31:19,048 | INFO     | cpuconsumptiontime: 215030 s
[2025-11-24 18:32:26] 2025-11-24 23:31:19,048 | INFO     | nevents: 1000
[2025-11-24 18:32:26] 2025-11-24 23:31:19,048 | INFO     | neventsw: 0
[2025-11-24 18:32:26] 2025-11-24 23:31:19,048 | INFO     | pid: 4054261
[2025-11-24 18:32:26] 2025-11-24 23:31:19,048 | INFO     | pgrp: 4054261
[2025-11-24 18:32:26] 2025-11-24 23:31:19,048 | INFO     | corecount: 8
[2025-11-24 18:32:26] 2025-11-24 23:31:19,048 | INFO     | event service: False
[2025-11-24 18:32:26] 2025-11-24 23:31:19,049 | INFO     | sizes: {0: 2298756, 6: 2299018, 11: 2299046, 95647: 2368403, 95648: 2368402, 95656: 2378427, 95669: 2378617}
[2025-11-24 18:32:26] 2025-11-24 23:31:19,049 | INFO     | --------------------------------------------------
[2025-11-24 18:32:26] 2025-11-24 23:31:19,049 | INFO     | 
[2025-11-24 18:32:26] 2025-11-24 23:31:19,049 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-24 18:32:26] 2025-11-24 23:31:19,109 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 18:32:26] 2025-11-24 23:31:19,109 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 18:32:26] 2025-11-24 23:31:19,109 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 18:32:26] 2025-11-24 23:31:19,110 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 18:32:26] 2025-11-24 23:31:19,110 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 18:32:26] 2025-11-24 23:31:19,110 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 18:32:26] 2025-11-24 23:31:19,110 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 18:32:26] 2025-11-24 23:31:19,110 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 18:32:26] 2025-11-24 23:31:19,110 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 18:32:26] 2025-11-24 23:31:19,110 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 18:32:26] 2025-11-24 23:31:19,110 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 18:32:26] 2025-11-24 23:31:19,110 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 18:32:26] 2025-11-24 23:31:19,110 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 18:32:26] 2025-11-24 23:31:19,110 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 18:32:26] 2025-11-24 23:31:19,110 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 18:32:26] 2025-11-24 23:31:19,111 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 18:32:26] 2025-11-24 23:31:19,111 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 18:32:26] 2025-11-24 23:31:19,111 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 18:32:26] 2025-11-24 23:31:19,111 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 18:32:26] 2025-11-24 23:31:19,111 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 18:32:26] 2025-11-24 23:31:19,111 | INFO     | job 6895330929 has completed (purged errors)
[2025-11-24 18:32:26] 2025-11-24 23:31:19,111 | INFO     | overall cleanup function is called
[2025-11-24 18:32:26] 2025-11-24 23:31:20,129 | INFO     | --- collectZombieJob: --- 10, [4054261]
[2025-11-24 18:32:26] 2025-11-24 23:31:20,130 | INFO     | zombie collector waiting for pid 4054261
[2025-11-24 18:32:26] 2025-11-24 23:31:20,130 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 18:32:26] 2025-11-24 23:31:20,130 | INFO     | collected zombie processes
[2025-11-24 18:32:26] 2025-11-24 23:31:20,130 | INFO     | will attempt to kill all subprocesses of pid=4054261
[2025-11-24 18:32:26] 2025-11-24 23:31:20,854 | INFO     | process IDs to be killed: [4054261] (in reverse order)
[2025-11-24 18:32:26] 2025-11-24 23:31:20,999 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 18:32:26] 2025-11-24 23:31:21,000 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 18:32:26] 2025-11-24 23:31:21,063 | INFO     | did not find any defunct processes belonging to 4054261
[2025-11-24 18:32:26] 2025-11-24 23:31:21,089 | INFO     | did not find any defunct processes belonging to 4054261
[2025-11-24 18:32:26] 2025-11-24 23:31:21,108 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 18:32:26] 2025-11-24 23:31:21,109 | INFO     | ready for new job
[2025-11-24 18:32:26] 2025-11-24 23:31:21,109 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 18:32:26] 2025-11-24 23:31:21,128 | INFO     | ***************************************
[2025-11-24 18:32:26] 2025-11-24 23:31:21,128 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 18:32:26] 2025-11-24 23:31:21,128 | INFO     | ***************************************
[2025-11-24 18:32:26] 2025-11-24 23:31:21,129 | INFO     | 
[2025-11-24 18:32:26] 2025-11-24 23:31:21,133 | INFO     | architecture information:
[2025-11-24 18:32:26] 2025-11-24 23:31:21,134 | INFO     | executing command: cat /etc/os-release
[2025-11-24 18:32:26] 2025-11-24 23:31:21,201 | INFO     | cat /etc/os-release:
[2025-11-24 18:32:26] NAME="CentOS Linux"
[2025-11-24 18:32:26] VERSION="7 (Core)"
[2025-11-24 18:32:26] ID="centos"
[2025-11-24 18:32:26] ID_LIKE="rhel fedora"
[2025-11-24 18:32:26] VERSION_ID="7"
[2025-11-24 18:32:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 18:32:26] ANSI_COLOR="0;31"
[2025-11-24 18:32:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 18:32:26] HOME_URL="https://www.centos.org/"
[2025-11-24 18:32:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 18:32:26] 
[2025-11-24 18:32:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 18:32:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 18:32:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 18:32:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 18:32:26] 
[2025-11-24 18:32:26] 2025-11-24 23:31:21,202 | INFO     | ***************************************
[2025-11-24 18:32:26] 2025-11-24 23:31:21,705 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-24 18:32:26] 2025-11-24 23:31:21,749 | INFO     | sufficient remaining disk space (121398886400 B)
[2025-11-24 18:32:26] 2025-11-24 23:31:21,750 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 18:32:26] 2025-11-24 23:31:21,750 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 18:32:26] 2025-11-24 23:31:21,750 | INFO     | update_server=False
[2025-11-24 18:32:26] 2025-11-24 23:31:21,750 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 18:32:26] 2025-11-24 23:31:21,758 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 18:32:26] 2025-11-24 23:31:21,758 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 18:32:26] 2025-11-24 23:31:21,758 | INFO     | aborting loop
[2025-11-24 18:32:26] 2025-11-24 23:31:21,759 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 18:32:26] 2025-11-24 23:31:22,350 | INFO     | all payload control threads have been joined
[2025-11-24 18:32:26] 2025-11-24 23:31:22,756 | INFO     | [job] retrieve thread has finished
[2025-11-24 18:32:26] 2025-11-24 23:31:22,764 | INFO     | [job] job monitor thread has finished
[2025-11-24 18:32:26] 2025-11-24 23:31:22,848 | INFO     | all data control threads have been joined
[2025-11-24 18:32:26] 2025-11-24 23:31:22,853 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 18:32:26] 2025-11-24 23:31:22,967 | INFO     | all job control threads have been joined
[2025-11-24 18:32:26] 2025-11-24 23:31:23,224 | INFO     | [data] copytool_in thread has finished
[2025-11-24 18:32:26] 2025-11-24 23:31:23,225 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 18:32:26] 2025-11-24 23:31:23,242 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 18:32:26] 2025-11-24 23:31:23,356 | INFO     | [payload] control thread has finished
[2025-11-24 18:32:26] 2025-11-24 23:31:23,421 | INFO     | [payload] validate_post thread has finished
[2025-11-24 18:32:26] 2025-11-24 23:31:23,558 | INFO     | [payload] failed_post thread has finished
[2025-11-24 18:32:26] 2025-11-24 23:31:23,767 | INFO     | [data] copytool_out thread has finished
[2025-11-24 18:32:26] 2025-11-24 23:31:23,770 | INFO     | [job] validate thread has finished
[2025-11-24 18:32:26] 2025-11-24 23:31:23,794 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 18:32:26] 2025-11-24 23:31:23,854 | INFO     | [data] control thread has finished
[2025-11-24 18:32:26] 2025-11-24 23:31:23,973 | INFO     | [job] control thread has finished
[2025-11-24 18:32:26] 2025-11-24 23:31:24,071 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 18:32:26] 2025-11-24 23:31:25,077 | INFO     | [job] queue monitor thread has finished
[2025-11-24 18:32:26] 2025-11-24 23:31:25,788 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 18:32:26] 2025-11-24 23:31:52,008 | INFO     | PID=4046583 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 18:32:26] 2025-11-24 23:31:52,008 | INFO     | .. there are 25 such processes running
[2025-11-24 18:32:26] 2025-11-24 23:31:52,008 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 18:32:26] 2025-11-24 23:31:52,008 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 18:32:26] 2025-11-24 23:31:52,009 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 18:32:26] 2025-11-24 23:32:19,637 | INFO     | [monitor] cgroup control has ended
[2025-11-24 18:32:26] 2025-11-24 23:32:20,646 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140355111118656)>', '<ExcThread(monitor, started 140354447709952)>']
[2025-11-24 18:32:26] 2025-11-24 23:32:21,198 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 18:32:26] 2025-11-24 23:32:21,198 | INFO     | [monitor] control thread has ended
[2025-11-24 18:32:26] 2025-11-24 23:32:25,672 | INFO     | all workflow threads have been joined
[2025-11-24 18:32:26] 2025-11-24 23:32:25,672 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 18:32:26] 2025-11-24 23:32:25,672 | INFO     | traces error code: 0
[2025-11-24 18:32:26] 2025-11-24 23:32:25,672 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 18:32:26] 2025-11-24 23:32:25,898 [wrapper] ==== pilot stdout END ====
[2025-11-24 18:32:26] 2025-11-24 23:32:25,901 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 18:32:26] 2025-11-24 23:32:25,903 [wrapper] pilotpid: 4046583
[2025-11-24 18:32:26] 2025-11-24 23:32:25,905 [wrapper] Pilot exit status: 0
[2025-11-24 18:32:26] 2025-11-24 23:32:25,927 [wrapper] pandaids: 6895330929
[2025-11-24 18:32:26] 2025-11-24 23:32:26,084 [wrapper] cleanup supervisor_pilot   14011 4046584
[2025-11-24 18:32:26] 2025-11-24 23:32:26,089 [wrapper] Test setup, not cleaning
[2025-11-24 18:32:26] 2025-11-24 23:32:26,092 [wrapper] apfmon messages muted
[2025-11-24 18:32:26] 2025-11-24 23:32:26,095 [wrapper] ==== wrapper stdout END ====
[2025-11-24 18:32:26] 2025-11-24 23:32:26,099 [wrapper] ==== wrapper stderr END ====
[2025-11-24 18:32:26]  *** Error codes and diagnostics ***
[2025-11-24 18:32:26]     "exeErrorCode": 0,
[2025-11-24 18:32:26]     "exeErrorDiag": "",
[2025-11-24 18:32:26]     "pilotErrorCode": 0,
[2025-11-24 18:32:26]     "pilotErrorDiag": "",
[2025-11-24 18:32:26]  *** Listing of results directory ***
[2025-11-24 18:32:26] total 1339996
[2025-11-24 18:32:26] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 16:55 pilot3.tar.gz
[2025-11-24 18:32:26] -rwx------. 1 boincer umatlas     36292 Nov 21 17:02 runpilot2-wrapper.sh
[2025-11-24 18:32:26] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 17:02 queuedata.json
[2025-11-24 18:32:26] -rw-r--r--. 1 boincer umatlas       100 Nov 23 15:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 18:32:26] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 15:56 run_atlas
[2025-11-24 18:32:26] -rw-r--r--. 1 boincer umatlas       105 Nov 23 15:56 job.xml
[2025-11-24 18:32:26] -rw-r--r--. 2 boincer umatlas 409403168 Nov 23 15:56 EVNT.47483658._000149.pool.root.1
[2025-11-24 18:32:26] -rw-r--r--. 2 boincer umatlas    590100 Nov 23 15:56 input.tar.gz
[2025-11-24 18:32:26] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 15:56 start_atlas.sh
[2025-11-24 18:32:26] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 15:56 shared
[2025-11-24 18:32:26] -rw-r--r--. 1 boincer umatlas         0 Nov 23 15:56 boinc_lockfile
[2025-11-24 18:32:26] -rw-r--r--. 1 boincer umatlas      2785 Nov 23 15:56 pandaJob.out
[2025-11-24 18:32:26] -rw-------. 1 boincer umatlas        57 Nov 23 15:56 setup.sh.local
[2025-11-24 18:32:26] -rw-------. 1 boincer umatlas    989786 Nov 23 15:56 agis_schedconf.cvmfs.json
[2025-11-24 18:32:26] drwx------. 5 boincer umatlas      4096 Nov 23 15:56 pilot3
[2025-11-24 18:32:26] -rw-r--r--. 1 boincer umatlas       533 Nov 24 17:48 boinc_task_state.xml
[2025-11-24 18:32:26] -rw-------. 1 boincer umatlas 928458618 Nov 24 18:28 HITS.47556137._001484.pool.root.1
[2025-11-24 18:32:26] -rw-------. 1 boincer umatlas      1071 Nov 24 18:30 memory_monitor_summary.json
[2025-11-24 18:32:26] -rw-------. 1 boincer umatlas   1516227 Nov 24 18:31 agis_ddmendpoints.agis.ALL.json
[2025-11-24 18:32:26] -rw-------. 1 boincer umatlas   2630611 Nov 24 18:31 log.47556137._001484.job.log.tgz.1
[2025-11-24 18:32:26] -rw-r--r--. 1 boincer umatlas      6949 Nov 24 18:31 init_data.xml
[2025-11-24 18:32:26] -rw-------. 1 boincer umatlas        95 Nov 24 18:31 pilot_heartbeat.json
[2025-11-24 18:32:26] -rw-------. 1 boincer umatlas      8629 Nov 24 18:31 heartbeat.json
[2025-11-24 18:32:26] -rw-------. 1 boincer umatlas      4825 Nov 24 18:32 pilotlog.txt
[2025-11-24 18:32:26] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 18:32 boinc_mmap_file
[2025-11-24 18:32:26] -rw-------. 1 boincer umatlas  12570169 Nov 24 18:32 log.47556137._001484.job.log.1
[2025-11-24 18:32:26] -rw-r--r--. 1 boincer umatlas        29 Nov 24 18:32 wrapper_checkpoint.txt
[2025-11-24 18:32:26] -rw-------. 1 boincer umatlas       353 Nov 24 18:32 output.list
[2025-11-24 18:32:26] -rw-r--r--. 1 boincer umatlas       620 Nov 24 18:32 runtime_log
[2025-11-24 18:32:26] -rw-------. 1 boincer umatlas  15216640 Nov 24 18:32 result.tar.gz
[2025-11-24 18:32:26] -rw-r--r--. 1 boincer umatlas      9343 Nov 24 18:32 runtime_log.err
[2025-11-24 18:32:26] -rw-------. 1 boincer umatlas       666 Nov 24 18:32 IPcLDmuNog8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmcpHKDmEAYr5n.diag
[2025-11-24 18:32:26] -rw-r--r--. 1 boincer umatlas      2075 Nov 24 18:32 stderr.txt
[2025-11-24 18:32:26] HITS file was successfully produced:
[2025-11-24 18:32:26] -rw-------. 1 boincer umatlas 928458618 Nov 24 18:28 shared/HITS.pool.root.1
[2025-11-24 18:32:26]  *** Contents of shared directory: ***
[2025-11-24 18:32:26] total 1321972
[2025-11-24 18:32:26] -rw-r--r--. 2 boincer umatlas 409403168 Nov 23 15:56 ATLAS.root_0
[2025-11-24 18:32:26] -rw-r--r--. 2 boincer umatlas    590100 Nov 23 15:56 input.tar.gz
[2025-11-24 18:32:26] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 15:56 start_atlas.sh
[2025-11-24 18:32:26] -rw-------. 1 boincer umatlas 928458618 Nov 24 18:28 HITS.pool.root.1
[2025-11-24 18:32:26] -rw-------. 1 boincer umatlas  15216640 Nov 24 18:32 result.tar.gz
18:32:48 (4042910): run_atlas exited; CPU time 216318.797195
18:32:48 (4042910): called boinc_finish(0)

</stderr_txt>
]]>

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