Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
07:48:44 (3958081): wrapper (7.7.26015): starting
07:48:44 (3958081): wrapper: running run_atlas (--nthreads 10)
[2025-11-26 07:48:44] Arguments: --nthreads 10
[2025-11-26 07:48:44] Threads: 10
[2025-11-26 07:48:44] Checking for CVMFS
[2025-11-26 07:48:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 07:48:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 07:48:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 07:48:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 07:48:45] 2.13.3.0 7351 11533 51028 153326 1 81 3249875 4096000 8899 130560 0 35680150 99.983 713109 770 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-26 07:48:45] CVMFS is ok
[2025-11-26 07:48:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 07:48:45] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-26 07:48:45] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-26 07:48:45] Further information can be found at the LHC@home message board.
[2025-11-26 07:48:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 07:48:45] Checking for apptainer binary...
[2025-11-26 07:48:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 07:48:45] Running /usr/bin/apptainer --version
[2025-11-26 07:48:45] apptainer version 1.4.2
[2025-11-26 07:48:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 07:48:45] 3950x-linux
[2025-11-26 07:48:45] apptainer works
[2025-11-26 07:48:45] Set ATHENA_PROC_NUMBER=10
[2025-11-26 07:48:45] Set ATHENA_CORE_NUMBER=10
[2025-11-26 07:48:45] Starting ATLAS job with PandaID=6895338712
[2025-11-26 07:48:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc225/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 05:56:38]  *** The last 200 lines of the pilot log: ***
[2025-11-27 05:56:38] 2025-11-27 13:55:37,948 | INFO     | monitor loop #5146: job 0:6895338712 is in state 'finished'
[2025-11-27 05:56:38] 2025-11-27 13:55:37,948 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:56:38] 2025-11-27 13:55:39,342 | INFO     | time since job start (79581s) is within the limit (172800.0s)
[2025-11-27 05:56:38] 2025-11-27 13:55:40,455 | INFO     | monitor loop #5147: job 0:6895338712 is in state 'finished'
[2025-11-27 05:56:38] 2025-11-27 13:55:40,455 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:56:38] 2025-11-27 13:55:41,349 | INFO     | time since job start (79583s) is within the limit (172800.0s)
[2025-11-27 05:56:38] 2025-11-27 13:55:42,960 | INFO     | monitor loop #5148: job 0:6895338712 is in state 'finished'
[2025-11-27 05:56:38] 2025-11-27 13:55:42,960 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:56:38] 2025-11-27 13:55:43,357 | INFO     | time since job start (79585s) is within the limit (172800.0s)
[2025-11-27 05:56:38] 2025-11-27 13:55:44,359 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 05:56:38] 2025-11-27 13:55:44,379 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3249.78425
[2025-11-27 05:56:38] 2025-11-27 13:55:44,418 | INFO     | using path: /var/lib/multiboinc/boinc225/slots/1/PanDA_Pilot-6895338712/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 05:56:38] 2025-11-27 13:55:44,418 | INFO     | extracted standard info from prmon json
[2025-11-27 05:56:38] 2025-11-27 13:55:44,418 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 05:56:38] 2025-11-27 13:55:44,418 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 05:56:38] 2025-11-27 13:55:44,483 | INFO     | fitting pss+swap vs Time
[2025-11-27 05:56:38] 2025-11-27 13:55:44,491 | INFO     | sum of square deviations: 685983160642.3966
[2025-11-27 05:56:38] 2025-11-27 13:55:44,609 | INFO     | sum of deviations: 3141370778291.4854
[2025-11-27 05:56:38] 2025-11-27 13:55:44,610 | INFO     | mean x: 1764211943.7843437
[2025-11-27 05:56:38] 2025-11-27 13:55:44,610 | INFO     | mean y: 3147486.5141980047
[2025-11-27 05:56:38] 2025-11-27 13:55:44,610 | INFO     | intersect: -8075831947.510172
[2025-11-27 05:56:38] 2025-11-27 13:55:44,611 | INFO     | chi2: 13.124874581517428
[2025-11-27 05:56:38] 2025-11-27 13:55:44,621 | INFO     | sum of square deviations: 678117996098.0195
[2025-11-27 05:56:38] 2025-11-27 13:55:44,766 | INFO     | sum of deviations: 3626592061081.1074
[2025-11-27 05:56:38] 2025-11-27 13:55:44,766 | INFO     | mean x: 1764211791.2989213
[2025-11-27 05:56:38] 2025-11-27 13:55:44,766 | INFO     | mean y: 3156892.218798151
[2025-11-27 05:56:38] 2025-11-27 13:55:44,766 | INFO     | intersect: -9431892042.045923
[2025-11-27 05:56:38] 2025-11-27 13:55:44,767 | INFO     | chi2: 9.843856036344622
[2025-11-27 05:56:38] 2025-11-27 13:55:44,767 | INFO     | current chi2=9.843856036344622 (change=24.998475412429215 %)
[2025-11-27 05:56:38] 2025-11-27 13:55:44,768 | INFO     | right removable region: 1297
[2025-11-27 05:56:38] 2025-11-27 13:55:44,778 | INFO     | sum of square deviations: 678114988188.0184
[2025-11-27 05:56:38] 2025-11-27 13:55:44,908 | INFO     | sum of deviations: 2628150573983.468
[2025-11-27 05:56:38] 2025-11-27 13:55:44,908 | INFO     | mean x: 1764212096.2989213
[2025-11-27 05:56:38] 2025-11-27 13:55:44,908 | INFO     | mean y: 3157432.1895223423
[2025-11-27 05:56:38] 2025-11-27 13:55:44,908 | INFO     | intersect: -6834348174.206262
[2025-11-27 05:56:38] 2025-11-27 13:55:44,909 | INFO     | chi2: 9.826930299687323
[2025-11-27 05:56:38] 2025-11-27 13:55:44,910 | INFO     | current chi2=9.826930299687323 (change=25.127434638303527 %)
[2025-11-27 05:56:38] 2025-11-27 13:55:44,928 | INFO     | sum of square deviations: 670307662955.8201
[2025-11-27 05:56:38] 2025-11-27 13:55:45,040 | INFO     | sum of deviations: 2357698379806.383
[2025-11-27 05:56:38] 2025-11-27 13:55:45,040 | INFO     | mean x: 1764212248.8089714
[2025-11-27 05:56:38] 2025-11-27 13:55:45,040 | INFO     | mean y: 3162710.345707657
[2025-11-27 05:56:38] 2025-11-27 13:55:45,040 | INFO     | intersect: -6202167454.476887
[2025-11-27 05:56:38] 2025-11-27 13:55:45,041 | INFO     | chi2: 8.836271533042792
[2025-11-27 05:56:38] 2025-11-27 13:55:45,050 | INFO     | current chi2=8.836271533042792 (change=10.081060274499473 %)
[2025-11-27 05:56:38] 2025-11-27 13:55:45,050 | INFO     | left removable region: 20
[2025-11-27 05:56:38] 2025-11-27 13:55:45,052 | INFO     | sum of square deviations: 645732220034.099
[2025-11-27 05:56:38] 2025-11-27 13:55:45,179 | INFO     | sum of deviations: 2748780370369.465
[2025-11-27 05:56:38] 2025-11-27 13:55:45,185 | INFO     | mean x: 1764212370.827721
[2025-11-27 05:56:38] 2025-11-27 13:55:45,185 | INFO     | mean y: 3177759.9021143303
[2025-11-27 05:56:38] 2025-11-27 13:55:45,186 | INFO     | intersect: -7506796473.438964
[2025-11-27 05:56:38] 2025-11-27 13:55:45,187 | INFO     | chi2: 4.846113322879897
[2025-11-27 05:56:38] 2025-11-27 13:55:45,187 | INFO     | current memory leak: 4.26 B/s (using 1277 data points, chi2=4.85)
[2025-11-27 05:56:38] 2025-11-27 13:55:45,188 | INFO     | could have reported an average CPU frequency of 3249 MHz (47 samples)
[2025-11-27 05:56:38] 2025-11-27 13:55:45,188 | INFO     | ..............................
[2025-11-27 05:56:38] 2025-11-27 13:55:45,188 | INFO     | . Timing measurements:
[2025-11-27 05:56:38] 2025-11-27 13:55:45,188 | INFO     | . get job = 0 s
[2025-11-27 05:56:38] 2025-11-27 13:55:45,188 | INFO     | . initial setup = 5 s
[2025-11-27 05:56:38] 2025-11-27 13:55:45,188 | INFO     | . payload setup = 18 s
[2025-11-27 05:56:38] 2025-11-27 13:55:45,188 | INFO     | . stage-in = 0 s
[2025-11-27 05:56:38] 2025-11-27 13:55:45,188 | INFO     | . payload execution = 79490 s
[2025-11-27 05:56:38] 2025-11-27 13:55:45,193 | INFO     | . stage-out = 9 s
[2025-11-27 05:56:38] 2025-11-27 13:55:45,194 | INFO     | . log creation = 3 s
[2025-11-27 05:56:38] 2025-11-27 13:55:45,194 | INFO     | ..............................
[2025-11-27 05:56:38] 2025-11-27 13:55:45,383 | INFO     | time since job start (79587s) is within the limit (172800.0s)
[2025-11-27 05:56:38] 2025-11-27 13:55:45,610 | INFO     | 
[2025-11-27 05:56:38] 2025-11-27 13:55:45,611 | INFO     | job summary report
[2025-11-27 05:56:38] 2025-11-27 13:55:45,611 | INFO     | --------------------------------------------------
[2025-11-27 05:56:38] 2025-11-27 13:55:45,611 | INFO     | PanDA job id: 6895338712
[2025-11-27 05:56:38] 2025-11-27 13:55:45,611 | INFO     | task id: 47556137
[2025-11-27 05:56:38] 2025-11-27 13:55:45,611 | INFO     | errors: (none)
[2025-11-27 05:56:38] 2025-11-27 13:55:45,611 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 05:56:38] 2025-11-27 13:55:45,611 | INFO     | pilot state: finished 
[2025-11-27 05:56:38] 2025-11-27 13:55:45,611 | INFO     | transexitcode: 0
[2025-11-27 05:56:38] 2025-11-27 13:55:45,611 | INFO     | exeerrorcode: 0
[2025-11-27 05:56:38] 2025-11-27 13:55:45,611 | INFO     | exeerrordiag: 
[2025-11-27 05:56:38] 2025-11-27 13:55:45,611 | INFO     | exitcode: 0
[2025-11-27 05:56:38] 2025-11-27 13:55:45,611 | INFO     | exitmsg: OK
[2025-11-27 05:56:38] 2025-11-27 13:55:45,611 | INFO     | cpuconsumptiontime: 216921 s
[2025-11-27 05:56:38] 2025-11-27 13:55:45,611 | INFO     | nevents: 1000
[2025-11-27 05:56:38] 2025-11-27 13:55:45,611 | INFO     | neventsw: 0
[2025-11-27 05:56:38] 2025-11-27 13:55:45,612 | INFO     | pid: 3972259
[2025-11-27 05:56:38] 2025-11-27 13:55:45,612 | INFO     | pgrp: 3972259
[2025-11-27 05:56:38] 2025-11-27 13:55:45,612 | INFO     | corecount: 10
[2025-11-27 05:56:38] 2025-11-27 13:55:45,612 | INFO     | event service: False
[2025-11-27 05:56:38] 2025-11-27 13:55:45,612 | INFO     | sizes: {0: 2283385, 1: 2284084, 2: 2284283, 13: 2284283, 16: 2284601, 24: 2284629, 79512: 2348728, 79513: 2348727, 79523: 2357805, 79524: 2357861, 79549: 2358107}
[2025-11-27 05:56:38] 2025-11-27 13:55:45,612 | INFO     | --------------------------------------------------
[2025-11-27 05:56:38] 2025-11-27 13:55:45,612 | INFO     | 
[2025-11-27 05:56:38] 2025-11-27 13:55:45,612 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc225/slots/1
[2025-11-27 05:56:38] 2025-11-27 13:55:45,706 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 05:56:38] 2025-11-27 13:55:45,706 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 05:56:38] 2025-11-27 13:55:45,706 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 05:56:38] 2025-11-27 13:55:45,706 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 05:56:38] 2025-11-27 13:55:45,706 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 05:56:38] 2025-11-27 13:55:45,706 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 05:56:38] 2025-11-27 13:55:45,706 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 05:56:38] 2025-11-27 13:55:45,706 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 05:56:38] 2025-11-27 13:55:45,706 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 05:56:38] 2025-11-27 13:55:45,707 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 05:56:38] 2025-11-27 13:55:45,707 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 05:56:38] 2025-11-27 13:55:45,707 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 05:56:38] 2025-11-27 13:55:45,707 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 05:56:38] 2025-11-27 13:55:45,707 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 05:56:38] 2025-11-27 13:55:45,707 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 05:56:38] 2025-11-27 13:55:45,707 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 05:56:38] 2025-11-27 13:55:45,707 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 05:56:38] 2025-11-27 13:55:45,707 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 05:56:38] 2025-11-27 13:55:45,707 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 05:56:38] 2025-11-27 13:55:45,707 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 05:56:38] 2025-11-27 13:55:45,707 | INFO     | job 6895338712 has completed (purged errors)
[2025-11-27 05:56:38] 2025-11-27 13:55:45,707 | INFO     | overall cleanup function is called
[2025-11-27 05:56:38] 2025-11-27 13:55:46,762 | INFO     | --- collectZombieJob: --- 10, [3972259]
[2025-11-27 05:56:38] 2025-11-27 13:55:46,762 | INFO     | zombie collector waiting for pid 3972259
[2025-11-27 05:56:38] 2025-11-27 13:55:46,763 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 05:56:38] 2025-11-27 13:55:46,763 | INFO     | collected zombie processes
[2025-11-27 05:56:38] 2025-11-27 13:55:46,763 | INFO     | will attempt to kill all subprocesses of pid=3972259
[2025-11-27 05:56:38] 2025-11-27 13:55:47,746 | INFO     | process IDs to be killed: [3972259] (in reverse order)
[2025-11-27 05:56:38] 2025-11-27 13:55:47,892 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 05:56:38] 2025-11-27 13:55:47,893 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 05:56:38] 2025-11-27 13:55:47,915 | INFO     | did not find any defunct processes belonging to 3972259
[2025-11-27 05:56:38] 2025-11-27 13:55:47,943 | INFO     | did not find any defunct processes belonging to 3972259
[2025-11-27 05:56:38] 2025-11-27 13:55:47,948 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 05:56:38] 2025-11-27 13:55:47,948 | INFO     | ready for new job
[2025-11-27 05:56:38] 2025-11-27 13:55:47,948 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 05:56:38] 2025-11-27 13:55:47,969 | INFO     | ***************************************
[2025-11-27 05:56:38] 2025-11-27 13:55:47,970 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 05:56:38] 2025-11-27 13:55:47,970 | INFO     | ***************************************
[2025-11-27 05:56:38] 2025-11-27 13:55:47,970 | INFO     | 
[2025-11-27 05:56:38] 2025-11-27 13:55:47,972 | INFO     | architecture information:
[2025-11-27 05:56:38] 2025-11-27 13:55:47,979 | INFO     | executing command: cat /etc/os-release
[2025-11-27 05:56:38] 2025-11-27 13:55:48,043 | INFO     | cat /etc/os-release:
[2025-11-27 05:56:38] NAME="CentOS Linux"
[2025-11-27 05:56:38] VERSION="7 (Core)"
[2025-11-27 05:56:38] ID="centos"
[2025-11-27 05:56:38] ID_LIKE="rhel fedora"
[2025-11-27 05:56:38] VERSION_ID="7"
[2025-11-27 05:56:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 05:56:38] ANSI_COLOR="0;31"
[2025-11-27 05:56:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 05:56:38] HOME_URL="https://www.centos.org/"
[2025-11-27 05:56:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 05:56:38] 
[2025-11-27 05:56:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 05:56:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 05:56:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 05:56:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 05:56:38] 
[2025-11-27 05:56:38] 2025-11-27 13:55:48,044 | INFO     | ***************************************
[2025-11-27 05:56:38] 2025-11-27 13:55:48,546 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc225/slots/1
[2025-11-27 05:56:38] 2025-11-27 13:55:48,589 | INFO     | sufficient remaining disk space (66428338176 B)
[2025-11-27 05:56:38] 2025-11-27 13:55:48,589 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 05:56:38] 2025-11-27 13:55:48,589 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 05:56:38] 2025-11-27 13:55:48,589 | INFO     | update_server=False
[2025-11-27 05:56:38] 2025-11-27 13:55:48,589 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 05:56:38] 2025-11-27 13:55:48,590 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 05:56:38] 2025-11-27 13:55:48,601 | INFO     | all job control threads have been joined
[2025-11-27 05:56:38] 2025-11-27 13:55:48,982 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:56:38] 2025-11-27 13:55:48,982 | INFO     | aborting loop
[2025-11-27 05:56:38] 2025-11-27 13:55:49,376 | INFO     | all data control threads have been joined
[2025-11-27 05:56:38] 2025-11-27 13:55:49,411 | INFO     | all payload control threads have been joined
[2025-11-27 05:56:38] 2025-11-27 13:55:49,527 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 05:56:38] 2025-11-27 13:55:49,597 | INFO     | [job] retrieve thread has finished
[2025-11-27 05:56:38] 2025-11-27 13:55:49,606 | INFO     | [job] control thread has finished
[2025-11-27 05:56:38] 2025-11-27 13:55:49,802 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 05:56:38] 2025-11-27 13:55:49,971 | INFO     | [payload] validate_post thread has finished
[2025-11-27 05:56:38] 2025-11-27 13:55:49,987 | INFO     | [job] job monitor thread has finished
[2025-11-27 05:56:38] 2025-11-27 13:55:50,266 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 05:56:38] 2025-11-27 13:55:50,269 | INFO     | [job] validate thread has finished
[2025-11-27 05:56:38] 2025-11-27 13:55:50,381 | INFO     | [data] control thread has finished
[2025-11-27 05:56:38] 2025-11-27 13:55:50,416 | INFO     | [payload] control thread has finished
[2025-11-27 05:56:38] 2025-11-27 13:55:50,470 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:56:38] 2025-11-27 13:55:50,476 | INFO     | [data] copytool_in thread has finished
[2025-11-27 05:56:38] 2025-11-27 13:55:50,622 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 05:56:38] 2025-11-27 13:55:50,834 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 05:56:38] 2025-11-27 13:55:51,125 | INFO     | [payload] failed_post thread has finished
[2025-11-27 05:56:38] 2025-11-27 13:55:51,483 | INFO     | [job] queue monitor thread has finished
[2025-11-27 05:56:38] 2025-11-27 13:55:51,532 | INFO     | [data] copytool_out thread has finished
[2025-11-27 05:56:38] 2025-11-27 13:55:52,594 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 05:56:38] 2025-11-27 13:56:19,691 | INFO     | PID=3963389 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 05:56:38] 2025-11-27 13:56:19,691 | INFO     | .. there are 12 such processes running
[2025-11-27 05:56:38] 2025-11-27 13:56:19,711 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 05:56:38] 2025-11-27 13:56:19,711 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 05:56:38] 2025-11-27 13:56:19,711 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 05:56:38] 2025-11-27 13:56:31,009 | INFO     | [monitor] cgroup control has ended
[2025-11-27 05:56:38] 2025-11-27 13:56:31,693 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 135028876547904)>', '<ExcThread(monitor, started 135028394682112)>']
[2025-11-27 05:56:38] 2025-11-27 13:56:31,776 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 05:56:38] 2025-11-27 13:56:31,776 | INFO     | [monitor] control thread has ended
[2025-11-27 05:56:38] 2025-11-27 13:56:36,718 | INFO     | all workflow threads have been joined
[2025-11-27 05:56:38] 2025-11-27 13:56:36,718 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 05:56:38] 2025-11-27 13:56:36,719 | INFO     | traces error code: 0
[2025-11-27 05:56:38] 2025-11-27 13:56:36,719 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 05:56:38] 2025-11-27 13:56:37,264 [wrapper] ==== pilot stdout END ====
[2025-11-27 05:56:38] 2025-11-27 13:56:37,279 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 05:56:38] 2025-11-27 13:56:37,293 [wrapper] pilotpid: 3963389
[2025-11-27 05:56:38] 2025-11-27 13:56:37,307 [wrapper] Pilot exit status: 0
[2025-11-27 05:56:38] 2025-11-27 13:56:37,379 [wrapper] pandaids: 6895338712
[2025-11-27 05:56:38] 2025-11-27 13:56:37,601 [wrapper] cleanup supervisor_pilot 1223100 3963390
[2025-11-27 05:56:38] 2025-11-27 13:56:37,615 [wrapper] Test setup, not cleaning
[2025-11-27 05:56:38] 2025-11-27 13:56:37,637 [wrapper] apfmon messages muted
[2025-11-27 05:56:38] 2025-11-27 13:56:37,660 [wrapper] ==== wrapper stdout END ====
[2025-11-27 05:56:38] 2025-11-27 13:56:37,690 [wrapper] ==== wrapper stderr END ====
[2025-11-27 05:56:38]  *** Error codes and diagnostics ***
[2025-11-27 05:56:38]     "exeErrorCode": 0,
[2025-11-27 05:56:38]     "exeErrorDiag": "",
[2025-11-27 05:56:38]     "pilotErrorCode": 0,
[2025-11-27 05:56:38]     "pilotErrorDiag": "",
[2025-11-27 05:56:38]  *** Listing of results directory ***
[2025-11-27 05:56:38] total 1322700
[2025-11-27 05:56:38] -rw-r--r-- 1 root root    576529 Nov 22 01:55 pilot3.tar.gz
[2025-11-27 05:56:38] -rw-r--r-- 1 root root      5112 Nov 22 01:57 queuedata.json
[2025-11-27 05:56:38] -rwx------ 1 4871 1028     36292 Nov 22 01:57 runpilot2-wrapper.sh
[2025-11-27 05:56:38] -rw-r--r-- 1 root root       100 Nov 26 07:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 05:56:38] -rwxr-xr-x 1 root root      7986 Nov 26 07:48 run_atlas
[2025-11-27 05:56:38] -rw-r--r-- 1 root root       105 Nov 26 07:48 job.xml
[2025-11-27 05:56:38] -rw-r--r-- 2 root root 410005264 Nov 26 07:48 EVNT.47483658._000338.pool.root.1
[2025-11-27 05:56:38] drwxrwx--x 2 root root      4096 Nov 26 07:48 shared
[2025-11-27 05:56:38] -rw-r--r-- 2 root root    590102 Nov 26 07:48 input.tar.gz
[2025-11-27 05:56:38] -rw-r--r-- 2 root root     15847 Nov 26 07:48 start_atlas.sh
[2025-11-27 05:56:38] -rw-r--r-- 1 root root         0 Nov 26 07:48 boinc_setup_complete
[2025-11-27 05:56:38] -rw-r--r-- 1 root root      9237 Nov 26 07:48 init_data.xml
[2025-11-27 05:56:38] -rw-r--r-- 1 root root         0 Nov 26 07:48 boinc_lockfile
[2025-11-27 05:56:38] -rw-r--r-- 1 root root      2784 Nov 26 07:48 pandaJob.out
[2025-11-27 05:56:38] -rw------- 1 root root    991855 Nov 26 07:49 agis_schedconf.cvmfs.json
[2025-11-27 05:56:38] drwxr-xr-x 5  320  320      4096 Nov 26 07:49 pilot3
[2025-11-27 05:56:38] -rw-r--r-- 1 root root       533 Nov 27 05:34 boinc_task_state.xml
[2025-11-27 05:56:38] -rw------- 1 root root 913646836 Nov 27 05:53 HITS.47556137._003348.pool.root.1
[2025-11-27 05:56:38] -rw------- 1 root root      1047 Nov 27 05:55 memory_monitor_summary.json
[2025-11-27 05:56:38] -rw------- 1 root root   1516240 Nov 27 05:55 agis_ddmendpoints.agis.ALL.json
[2025-11-27 05:56:38] -rw------- 1 root root   2628022 Nov 27 05:55 log.47556137._003348.job.log.tgz.1
[2025-11-27 05:56:38] -rw------- 1 root root      8604 Nov 27 05:55 heartbeat.json
[2025-11-27 05:56:38] -rw-r--r-- 1 root root      8192 Nov 27 05:56 boinc_mmap_file
[2025-11-27 05:56:38] -rw-r--r-- 1 root root        29 Nov 27 05:56 wrapper_checkpoint.txt
[2025-11-27 05:56:38] -rw------- 1 root root        95 Nov 27 05:56 pilot_heartbeat.json
[2025-11-27 05:56:38] -rw------- 1 root root      4838 Nov 27 05:56 pilotlog.txt
[2025-11-27 05:56:38] -rw------- 1 root root  10805465 Nov 27 05:56 log.47556137._003348.job.log.1
[2025-11-27 05:56:38] -rw------- 1 root root       353 Nov 27 05:56 output.list
[2025-11-27 05:56:38] -rw-r--r-- 1 root root       620 Nov 27 05:56 runtime_log
[2025-11-27 05:56:38] -rw------- 1 root root  13455360 Nov 27 05:56 result.tar.gz
[2025-11-27 05:56:38] -rw-r--r-- 1 root root      9021 Nov 27 05:56 runtime_log.err
[2025-11-27 05:56:38] -rw------- 1 root root       662 Nov 27 05:56 REnLDmUYzg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmL6JKDm2j3ISn.diag
[2025-11-27 05:56:38] -rw-r--r-- 1 root root     21697 Nov 27 05:56 stderr.txt
[2025-11-27 05:56:38] HITS file was successfully produced:
[2025-11-27 05:56:38] -rw------- 1 root root 913646836 Nov 27 05:53 shared/HITS.pool.root.1
[2025-11-27 05:56:38]  *** Contents of shared directory: ***
[2025-11-27 05:56:38] total 1306376
[2025-11-27 05:56:38] -rw-r--r-- 2 root root 410005264 Nov 26 07:48 ATLAS.root_0
[2025-11-27 05:56:38] -rw-r--r-- 2 root root    590102 Nov 26 07:48 input.tar.gz
[2025-11-27 05:56:38] -rw-r--r-- 2 root root     15847 Nov 26 07:48 start_atlas.sh
[2025-11-27 05:56:38] -rw------- 1 root root 913646836 Nov 27 05:53 HITS.pool.root.1
[2025-11-27 05:56:38] -rw------- 1 root root  13455360 Nov 27 05:56 result.tar.gz
05:56:39 (3958081): run_atlas exited; CPU time 217066.600000
05:56:39 (3958081): called boinc_finish(0)

</stderr_txt>
]]>

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