Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
02:34:48 (2127861): wrapper (7.7.26015): starting
02:34:48 (2127861): wrapper: running run_atlas (--nthreads 10)
[2025-11-25 02:34:48] Arguments: --nthreads 10
[2025-11-25 02:34:48] Threads: 10
[2025-11-25 02:34:48] Checking for CVMFS
[2025-11-25 02:34:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 02:34:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 02:34:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 02:34:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 02:34:49] 2.13.3.0 7351 9779 50200 153279 0 90 2912500 4096000 10487 130560 0 30348928 99.981 645713 758 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-25 02:34:49] CVMFS is ok
[2025-11-25 02:34:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 02:34:49] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-25 02:34:49] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-25 02:34:49] Further information can be found at the LHC@home message board.
[2025-11-25 02:34:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 02:34:49] Checking for apptainer binary...
[2025-11-25 02:34:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 02:34:49] Running /usr/bin/apptainer --version
[2025-11-25 02:34:49] apptainer version 1.4.2
[2025-11-25 02:34:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 02:34:50] 3950x-linux
[2025-11-25 02:34:50] apptainer works
[2025-11-25 02:34:50] Set ATHENA_PROC_NUMBER=10
[2025-11-25 02:34:50] Set ATHENA_CORE_NUMBER=10
[2025-11-25 02:34:50] Starting ATLAS job with PandaID=6895339098
[2025-11-25 02:34:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc225/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 23:28:39]  *** The last 200 lines of the pilot log: ***
[2025-11-25 23:28:39] 2025-11-26 07:27:34,508 | INFO     | time since job start (75127s) is within the limit (172800.0s)
[2025-11-25 23:28:39] 2025-11-26 07:27:35,573 | INFO     | monitor loop #4918: job 0:6895339098 is in state 'finished'
[2025-11-25 23:28:39] 2025-11-26 07:27:35,573 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:28:39] 2025-11-26 07:27:36,513 | INFO     | time since job start (75129s) is within the limit (172800.0s)
[2025-11-25 23:28:39] 2025-11-26 07:27:38,076 | INFO     | monitor loop #4919: job 0:6895339098 is in state 'finished'
[2025-11-25 23:28:39] 2025-11-26 07:27:38,076 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:28:39] 2025-11-26 07:27:38,520 | INFO     | time since job start (75131s) is within the limit (172800.0s)
[2025-11-25 23:28:39] 2025-11-26 07:27:40,534 | INFO     | time since job start (75133s) is within the limit (172800.0s)
[2025-11-25 23:28:39] 2025-11-26 07:27:40,581 | INFO     | monitor loop #4920: job 0:6895339098 is in state 'finished'
[2025-11-25 23:28:39] 2025-11-26 07:27:40,581 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:28:39] 2025-11-26 07:27:42,540 | INFO     | time since job start (75135s) is within the limit (172800.0s)
[2025-11-25 23:28:39] 2025-11-26 07:27:43,084 | INFO     | monitor loop #4921: job 0:6895339098 is in state 'finished'
[2025-11-25 23:28:39] 2025-11-26 07:27:43,084 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:28:39] 2025-11-26 07:27:44,548 | INFO     | time since job start (75137s) is within the limit (172800.0s)
[2025-11-25 23:28:39] 2025-11-26 07:27:45,589 | INFO     | monitor loop #4922: job 0:6895339098 is in state 'finished'
[2025-11-25 23:28:39] 2025-11-26 07:27:45,589 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:28:39] 2025-11-26 07:27:46,257 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 23:28:39] 2025-11-26 07:27:46,266 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3249.7904062499993
[2025-11-25 23:28:39] 2025-11-26 07:27:46,283 | INFO     | using path: /var/lib/multiboinc/boinc225/slots/3/PanDA_Pilot-6895339098/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 23:28:39] 2025-11-26 07:27:46,284 | INFO     | extracted standard info from prmon json
[2025-11-25 23:28:39] 2025-11-26 07:27:46,290 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 23:28:39] 2025-11-26 07:27:46,290 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 23:28:39] 2025-11-26 07:27:46,338 | INFO     | fitting pss+swap vs Time
[2025-11-25 23:28:39] 2025-11-26 07:27:46,339 | INFO     | sum of square deviations: 577014161722.5859
[2025-11-25 23:28:39] 2025-11-26 07:27:46,421 | INFO     | sum of deviations: 3050978153370.389
[2025-11-25 23:28:39] 2025-11-26 07:27:46,421 | INFO     | mean x: 1764104495.6585367
[2025-11-25 23:28:39] 2025-11-26 07:27:46,421 | INFO     | mean y: 3129985.93902439
[2025-11-25 23:28:39] 2025-11-26 07:27:46,421 | INFO     | intersect: -9324620758.425432
[2025-11-25 23:28:39] 2025-11-26 07:27:46,429 | INFO     | chi2: 14.515486718039377
[2025-11-25 23:28:39] 2025-11-26 07:27:46,430 | INFO     | sum of square deviations: 570007038449.9972
[2025-11-25 23:28:39] 2025-11-26 07:27:46,518 | INFO     | sum of deviations: 3515981891763.0874
[2025-11-25 23:28:39] 2025-11-26 07:27:46,518 | INFO     | mean x: 1764104343.1714287
[2025-11-25 23:28:39] 2025-11-26 07:27:46,518 | INFO     | mean y: 3140103.7853061226
[2025-11-25 23:28:39] 2025-11-26 07:27:46,518 | INFO     | intersect: -10878407855.057076
[2025-11-25 23:28:39] 2025-11-26 07:27:46,525 | INFO     | chi2: 11.104695464405125
[2025-11-25 23:28:39] 2025-11-26 07:27:46,526 | INFO     | current chi2=11.104695464405125 (change=23.49760169871142 %)
[2025-11-25 23:28:39] 2025-11-26 07:27:46,526 | INFO     | right removable region: 1224
[2025-11-25 23:28:39] 2025-11-26 07:27:46,527 | INFO     | sum of square deviations: 570004668599.9963
[2025-11-25 23:28:39] 2025-11-26 07:27:46,567 | INFO     | time since job start (75139s) is within the limit (172800.0s)
[2025-11-25 23:28:39] 2025-11-26 07:27:46,651 | INFO     | sum of deviations: 2548912858005.712
[2025-11-25 23:28:39] 2025-11-26 07:27:46,651 | INFO     | mean x: 1764104648.1714287
[2025-11-25 23:28:39] 2025-11-26 07:27:46,651 | INFO     | mean y: 3140907.420408163
[2025-11-25 23:28:39] 2025-11-26 07:27:46,651 | INFO     | intersect: -7885476972.9136095
[2025-11-25 23:28:39] 2025-11-26 07:27:46,652 | INFO     | chi2: 10.916349464645252
[2025-11-25 23:28:39] 2025-11-26 07:27:46,652 | INFO     | current chi2=10.916349464645252 (change=24.795153778214225 %)
[2025-11-25 23:28:39] 2025-11-26 07:27:46,653 | INFO     | left removable region: 10
[2025-11-25 23:28:39] 2025-11-26 07:27:46,658 | INFO     | sum of square deviations: 554786862000.8641
[2025-11-25 23:28:39] 2025-11-26 07:27:46,758 | INFO     | sum of deviations: 2745726474013.1978
[2025-11-25 23:28:39] 2025-11-26 07:27:46,759 | INFO     | mean x: 1764104617.7001648
[2025-11-25 23:28:39] 2025-11-26 07:27:46,759 | INFO     | mean y: 3160988.511532125
[2025-11-25 23:28:39] 2025-11-26 07:27:46,759 | INFO     | intersect: -8727667161.021557
[2025-11-25 23:28:39] 2025-11-26 07:27:46,763 | INFO     | chi2: 5.162861534551556
[2025-11-25 23:28:39] 2025-11-26 07:27:46,763 | INFO     | current memory leak: 4.95 B/s (using 1214 data points, chi2=5.16)
[2025-11-25 23:28:39] 2025-11-26 07:27:46,764 | INFO     | could have reported an average CPU frequency of 3249 MHz (45 samples)
[2025-11-25 23:28:39] 2025-11-26 07:27:46,764 | INFO     | ..............................
[2025-11-25 23:28:39] 2025-11-26 07:27:46,764 | INFO     | . Timing measurements:
[2025-11-25 23:28:39] 2025-11-26 07:27:46,764 | INFO     | . get job = 0 s
[2025-11-25 23:28:39] 2025-11-26 07:27:46,764 | INFO     | . initial setup = 5 s
[2025-11-25 23:28:39] 2025-11-26 07:27:46,764 | INFO     | . payload setup = 22 s
[2025-11-25 23:28:39] 2025-11-26 07:27:46,765 | INFO     | . stage-in = 0 s
[2025-11-25 23:28:39] 2025-11-26 07:27:46,765 | INFO     | . payload execution = 75032 s
[2025-11-25 23:28:39] 2025-11-26 07:27:46,765 | INFO     | . stage-out = 15 s
[2025-11-25 23:28:39] 2025-11-26 07:27:46,765 | INFO     | . log creation = 2 s
[2025-11-25 23:28:39] 2025-11-26 07:27:46,765 | INFO     | ..............................
[2025-11-25 23:28:39] 2025-11-26 07:27:47,057 | INFO     | 
[2025-11-25 23:28:39] 2025-11-26 07:27:47,058 | INFO     | job summary report
[2025-11-25 23:28:39] 2025-11-26 07:27:47,058 | INFO     | --------------------------------------------------
[2025-11-25 23:28:39] 2025-11-26 07:27:47,058 | INFO     | PanDA job id: 6895339098
[2025-11-25 23:28:39] 2025-11-26 07:27:47,058 | INFO     | task id: 47556137
[2025-11-25 23:28:39] 2025-11-26 07:27:47,058 | INFO     | errors: (none)
[2025-11-25 23:28:39] 2025-11-26 07:27:47,058 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 23:28:39] 2025-11-26 07:27:47,058 | INFO     | pilot state: finished 
[2025-11-25 23:28:39] 2025-11-26 07:27:47,058 | INFO     | transexitcode: 0
[2025-11-25 23:28:39] 2025-11-26 07:27:47,058 | INFO     | exeerrorcode: 0
[2025-11-25 23:28:39] 2025-11-26 07:27:47,058 | INFO     | exeerrordiag: 
[2025-11-25 23:28:39] 2025-11-26 07:27:47,058 | INFO     | exitcode: 0
[2025-11-25 23:28:39] 2025-11-26 07:27:47,058 | INFO     | exitmsg: OK
[2025-11-25 23:28:39] 2025-11-26 07:27:47,058 | INFO     | cpuconsumptiontime: 217667 s
[2025-11-25 23:28:39] 2025-11-26 07:27:47,058 | INFO     | nevents: 1000
[2025-11-25 23:28:39] 2025-11-26 07:27:47,059 | INFO     | neventsw: 0
[2025-11-25 23:28:39] 2025-11-26 07:27:47,059 | INFO     | pid: 2138545
[2025-11-25 23:28:39] 2025-11-26 07:27:47,059 | INFO     | pgrp: 2138545
[2025-11-25 23:28:39] 2025-11-26 07:27:47,059 | INFO     | corecount: 10
[2025-11-25 23:28:39] 2025-11-26 07:27:47,059 | INFO     | event service: False
[2025-11-25 23:28:39] 2025-11-26 07:27:47,059 | INFO     | sizes: {0: 2284107, 1: 2284306, 12: 2284306, 19: 2284596, 23: 2284624, 75058: 2347147, 75059: 2347274, 75076: 2356352, 75079: 2356408, 75098: 2356654}
[2025-11-25 23:28:39] 2025-11-26 07:27:47,059 | INFO     | --------------------------------------------------
[2025-11-25 23:28:39] 2025-11-26 07:27:47,059 | INFO     | 
[2025-11-25 23:28:39] 2025-11-26 07:27:47,059 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc225/slots/3
[2025-11-25 23:28:39] 2025-11-26 07:27:47,139 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 23:28:39] 2025-11-26 07:27:47,139 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 23:28:39] 2025-11-26 07:27:47,139 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 23:28:39] 2025-11-26 07:27:47,140 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 23:28:39] 2025-11-26 07:27:47,140 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 23:28:39] 2025-11-26 07:27:47,146 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 23:28:39] 2025-11-26 07:27:47,146 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 23:28:39] 2025-11-26 07:27:47,147 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 23:28:39] 2025-11-26 07:27:47,147 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 23:28:39] 2025-11-26 07:27:47,147 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 23:28:39] 2025-11-26 07:27:47,147 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 23:28:39] 2025-11-26 07:27:47,147 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 23:28:39] 2025-11-26 07:27:47,147 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 23:28:39] 2025-11-26 07:27:47,147 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 23:28:39] 2025-11-26 07:27:47,147 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 23:28:39] 2025-11-26 07:27:47,147 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 23:28:39] 2025-11-26 07:27:47,147 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 23:28:39] 2025-11-26 07:27:47,147 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 23:28:39] 2025-11-26 07:27:47,147 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 23:28:39] 2025-11-26 07:27:47,147 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 23:28:39] 2025-11-26 07:27:47,148 | INFO     | job 6895339098 has completed (purged errors)
[2025-11-25 23:28:39] 2025-11-26 07:27:47,148 | INFO     | overall cleanup function is called
[2025-11-25 23:28:39] 2025-11-26 07:27:48,209 | INFO     | --- collectZombieJob: --- 10, [2138545]
[2025-11-25 23:28:39] 2025-11-26 07:27:48,209 | INFO     | zombie collector waiting for pid 2138545
[2025-11-25 23:28:39] 2025-11-26 07:27:48,210 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 23:28:39] 2025-11-26 07:27:48,210 | INFO     | collected zombie processes
[2025-11-25 23:28:39] 2025-11-26 07:27:48,210 | INFO     | will attempt to kill all subprocesses of pid=2138545
[2025-11-25 23:28:39] 2025-11-26 07:27:48,985 | INFO     | process IDs to be killed: [2138545] (in reverse order)
[2025-11-25 23:28:39] 2025-11-26 07:27:49,295 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 23:28:39] 2025-11-26 07:27:49,295 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 23:28:39] 2025-11-26 07:27:49,324 | INFO     | did not find any defunct processes belonging to 2138545
[2025-11-25 23:28:39] 2025-11-26 07:27:49,344 | INFO     | did not find any defunct processes belonging to 2138545
[2025-11-25 23:28:39] 2025-11-26 07:27:49,352 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 23:28:39] 2025-11-26 07:27:49,352 | INFO     | ready for new job
[2025-11-25 23:28:39] 2025-11-26 07:27:49,352 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 23:28:39] 2025-11-26 07:27:49,364 | INFO     | ***************************************
[2025-11-25 23:28:39] 2025-11-26 07:27:49,364 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 23:28:39] 2025-11-26 07:27:49,364 | INFO     | ***************************************
[2025-11-25 23:28:39] 2025-11-26 07:27:49,364 | INFO     | 
[2025-11-25 23:28:39] 2025-11-26 07:27:49,366 | INFO     | architecture information:
[2025-11-25 23:28:39] 2025-11-26 07:27:49,369 | INFO     | executing command: cat /etc/os-release
[2025-11-25 23:28:39] 2025-11-26 07:27:49,429 | INFO     | cat /etc/os-release:
[2025-11-25 23:28:39] NAME="CentOS Linux"
[2025-11-25 23:28:39] VERSION="7 (Core)"
[2025-11-25 23:28:39] ID="centos"
[2025-11-25 23:28:39] ID_LIKE="rhel fedora"
[2025-11-25 23:28:39] VERSION_ID="7"
[2025-11-25 23:28:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 23:28:39] ANSI_COLOR="0;31"
[2025-11-25 23:28:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 23:28:39] HOME_URL="https://www.centos.org/"
[2025-11-25 23:28:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 23:28:39] 
[2025-11-25 23:28:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 23:28:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 23:28:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 23:28:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 23:28:39] 
[2025-11-25 23:28:39] 2025-11-26 07:27:49,429 | INFO     | ***************************************
[2025-11-25 23:28:39] 2025-11-26 07:27:49,935 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc225/slots/3
[2025-11-25 23:28:39] 2025-11-26 07:27:50,008 | INFO     | sufficient remaining disk space (66285731840 B)
[2025-11-25 23:28:39] 2025-11-26 07:27:50,008 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 23:28:39] 2025-11-26 07:27:50,008 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 23:28:39] 2025-11-26 07:27:50,008 | INFO     | update_server=False
[2025-11-25 23:28:39] 2025-11-26 07:27:50,012 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 23:28:39] 2025-11-26 07:27:50,012 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:28:39] 2025-11-26 07:27:50,013 | INFO     | aborting loop
[2025-11-25 23:28:39] 2025-11-26 07:27:50,511 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 23:28:39] 2025-11-26 07:27:50,768 | INFO     | all payload control threads have been joined
[2025-11-25 23:28:39] 2025-11-26 07:27:51,017 | INFO     | [job] job monitor thread has finished
[2025-11-25 23:28:39] 2025-11-26 07:27:51,021 | INFO     | [job] retrieve thread has finished
[2025-11-25 23:28:39] 2025-11-26 07:27:51,064 | INFO     | all data control threads have been joined
[2025-11-25 23:28:39] 2025-11-26 07:27:51,066 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 23:28:39] 2025-11-26 07:27:51,067 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 23:28:39] 2025-11-26 07:27:51,614 | INFO     | all job control threads have been joined
[2025-11-25 23:28:39] 2025-11-26 07:27:51,727 | INFO     | [payload] failed_post thread has finished
[2025-11-25 23:28:39] 2025-11-26 07:27:51,773 | INFO     | [payload] control thread has finished
[2025-11-25 23:28:39] 2025-11-26 07:27:51,862 | INFO     | [job] validate thread has finished
[2025-11-25 23:28:39] 2025-11-26 07:27:52,069 | INFO     | [data] control thread has finished
[2025-11-25 23:28:39] 2025-11-26 07:27:52,071 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:28:39] 2025-11-26 07:27:52,104 | INFO     | [data] copytool_in thread has finished
[2025-11-25 23:28:39] 2025-11-26 07:27:52,124 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 23:28:39] 2025-11-26 07:27:52,276 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 23:28:39] 2025-11-26 07:27:52,429 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 23:28:39] 2025-11-26 07:27:52,503 | INFO     | [payload] validate_post thread has finished
[2025-11-25 23:28:39] 2025-11-26 07:27:52,516 | INFO     | [data] copytool_out thread has finished
[2025-11-25 23:28:39] 2025-11-26 07:27:52,621 | INFO     | [job] control thread has finished
[2025-11-25 23:28:39] 2025-11-26 07:27:53,081 | INFO     | [job] queue monitor thread has finished
[2025-11-25 23:28:39] 2025-11-26 07:27:56,434 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 23:28:39] 2025-11-26 07:28:20,295 | INFO     | PID=2131777 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 23:28:39] 2025-11-26 07:28:20,295 | INFO     | .. there are 11 such processes running
[2025-11-25 23:28:39] 2025-11-26 07:28:20,295 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 23:28:39] 2025-11-26 07:28:20,295 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 23:28:39] 2025-11-26 07:28:20,295 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 23:28:39] 2025-11-26 07:28:32,656 | INFO     | [monitor] cgroup control has ended
[2025-11-25 23:28:39] 2025-11-26 07:28:33,839 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140097378797376)>', '<ExcThread(monitor, started 140096598701824)>']
[2025-11-25 23:28:39] 2025-11-26 07:28:34,376 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 23:28:39] 2025-11-26 07:28:34,376 | INFO     | [monitor] control thread has ended
[2025-11-25 23:28:39] 2025-11-26 07:28:38,864 | INFO     | all workflow threads have been joined
[2025-11-25 23:28:39] 2025-11-26 07:28:38,864 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 23:28:39] 2025-11-26 07:28:38,865 | INFO     | traces error code: 0
[2025-11-25 23:28:39] 2025-11-26 07:28:38,865 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 23:28:39] 2025-11-26 07:28:39,278 [wrapper] ==== pilot stdout END ====
[2025-11-25 23:28:39] 2025-11-26 07:28:39,299 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 23:28:39] 2025-11-26 07:28:39,312 [wrapper] pilotpid: 2131777
[2025-11-25 23:28:39] 2025-11-26 07:28:39,329 [wrapper] Pilot exit status: 0
[2025-11-25 23:28:39] 2025-11-26 07:28:39,384 [wrapper] pandaids: 6895339098
[2025-11-25 23:28:39] 2025-11-26 07:28:39,593 [wrapper] cleanup supervisor_pilot 3458930 2131778
[2025-11-25 23:28:39] 2025-11-26 07:28:39,613 [wrapper] Test setup, not cleaning
[2025-11-25 23:28:39] 2025-11-26 07:28:39,631 [wrapper] apfmon messages muted
[2025-11-25 23:28:39] 2025-11-26 07:28:39,644 [wrapper] ==== wrapper stdout END ====
[2025-11-25 23:28:39] 2025-11-26 07:28:39,663 [wrapper] ==== wrapper stderr END ====
[2025-11-25 23:28:39]  *** Error codes and diagnostics ***
[2025-11-25 23:28:40]     "exeErrorCode": 0,
[2025-11-25 23:28:40]     "exeErrorDiag": "",
[2025-11-25 23:28:40]     "pilotErrorCode": 0,
[2025-11-25 23:28:40]     "pilotErrorDiag": "",
[2025-11-25 23:28:40]  *** Listing of results directory ***
[2025-11-25 23:28:40] total 1334884
[2025-11-25 23:28:40] -rw-r--r-- 1 root root    576529 Nov 22 01:55 pilot3.tar.gz
[2025-11-25 23:28:40] -rw-r--r-- 1 root root      5112 Nov 22 02:11 queuedata.json
[2025-11-25 23:28:40] -rwx------ 1 4871 1028     36292 Nov 22 02:12 runpilot2-wrapper.sh
[2025-11-25 23:28:40] -rw-r--r-- 1 root root       100 Nov 25 02:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 23:28:40] -rwxr-xr-x 1 root root      7986 Nov 25 02:34 run_atlas
[2025-11-25 23:28:40] -rw-r--r-- 1 root root       105 Nov 25 02:34 job.xml
[2025-11-25 23:28:40] -rw-r--r-- 2 root root 409944413 Nov 25 02:34 EVNT.47483658._000343.pool.root.1
[2025-11-25 23:28:40] drwxrwx--x 2 root root      4096 Nov 25 02:34 shared
[2025-11-25 23:28:40] -rw-r--r-- 2 root root    590100 Nov 25 02:34 input.tar.gz
[2025-11-25 23:28:40] -rw-r--r-- 2 root root     15847 Nov 25 02:34 start_atlas.sh
[2025-11-25 23:28:40] -rw-r--r-- 1 root root         0 Nov 25 02:34 boinc_setup_complete
[2025-11-25 23:28:40] -rw-r--r-- 1 root root      9235 Nov 25 02:34 init_data.xml
[2025-11-25 23:28:40] -rw-r--r-- 1 root root         0 Nov 25 02:34 boinc_lockfile
[2025-11-25 23:28:40] -rw-r--r-- 1 root root      2785 Nov 25 02:34 pandaJob.out
[2025-11-25 23:28:40] -rw------- 1 root root    991894 Nov 25 02:35 agis_schedconf.cvmfs.json
[2025-11-25 23:28:40] drwxr-xr-x 5  320  320      4096 Nov 25 02:35 pilot3
[2025-11-25 23:28:40] -rw-r--r-- 1 root root       533 Nov 25 23:04 boinc_task_state.xml
[2025-11-25 23:28:40] -rw------- 1 root root 927281433 Nov 25 23:25 HITS.47556137._003399.pool.root.1
[2025-11-25 23:28:40] -rw------- 1 root root      1037 Nov 25 23:27 memory_monitor_summary.json
[2025-11-25 23:28:40] -rw------- 1 root root   1516240 Nov 25 23:27 agis_ddmendpoints.agis.ALL.json
[2025-11-25 23:28:40] -rw------- 1 root root   2583857 Nov 25 23:27 log.47556137._003399.job.log.tgz.1
[2025-11-25 23:28:40] -rw------- 1 root root        95 Nov 25 23:27 pilot_heartbeat.json
[2025-11-25 23:28:40] -rw------- 1 root root      8572 Nov 25 23:27 heartbeat.json
[2025-11-25 23:28:40] -rw-r--r-- 1 root root        29 Nov 25 23:28 wrapper_checkpoint.txt
[2025-11-25 23:28:40] -rw-r--r-- 1 root root      8192 Nov 25 23:28 boinc_mmap_file
[2025-11-25 23:28:40] -rw------- 1 root root      4838 Nov 25 23:28 pilotlog.txt
[2025-11-25 23:28:40] -rw------- 1 root root  10301477 Nov 25 23:28 log.47556137._003399.job.log.1
[2025-11-25 23:28:40] -rw------- 1 root root       353 Nov 25 23:28 output.list
[2025-11-25 23:28:40] -rw-r--r-- 1 root root       620 Nov 25 23:28 runtime_log
[2025-11-25 23:28:40] -rw------- 1 root root  12902400 Nov 25 23:28 result.tar.gz
[2025-11-25 23:28:40] -rw------- 1 root root       656 Nov 25 23:28 W0MODmKmzg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmX4HKDmn4Fe0n.diag
[2025-11-25 23:28:40] -rw-r--r-- 1 root root      9021 Nov 25 23:28 runtime_log.err
[2025-11-25 23:28:40] -rw-r--r-- 1 root root     21915 Nov 25 23:28 stderr.txt
[2025-11-25 23:28:40] HITS file was successfully produced:
[2025-11-25 23:28:40] -rw------- 1 root root 927281433 Nov 25 23:25 shared/HITS.pool.root.1
[2025-11-25 23:28:40]  *** Contents of shared directory: ***
[2025-11-25 23:28:40] total 1319096
[2025-11-25 23:28:40] -rw-r--r-- 2 root root 409944413 Nov 25 02:34 ATLAS.root_0
[2025-11-25 23:28:40] -rw-r--r-- 2 root root    590100 Nov 25 02:34 input.tar.gz
[2025-11-25 23:28:40] -rw-r--r-- 2 root root     15847 Nov 25 02:34 start_atlas.sh
[2025-11-25 23:28:40] -rw------- 1 root root 927281433 Nov 25 23:25 HITS.pool.root.1
[2025-11-25 23:28:40] -rw------- 1 root root  12902400 Nov 25 23:28 result.tar.gz
23:28:41 (2127861): run_atlas exited; CPU time 217982.384408
23:28:41 (2127861): called boinc_finish(0)

</stderr_txt>
]]>

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