Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:40:06 (1737702): wrapper (7.7.26015): starting
03:40:06 (1737702): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 03:40:06] Arguments: --nthreads 3
[2025-11-26 03:40:06] Threads: 3
[2025-11-26 03:40:06] Checking for CVMFS
[2025-11-26 03:40:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 03:40:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 03:40:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 03:40:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 03:40:07] 2.9.2.0 317284 10483 90984 153305 3 81 35052475 36864001 0 130560 0 3953832 99.931 536118 7107 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 03:40:07] CVMFS is ok
[2025-11-26 03:40:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 03:40:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 03:40:07] Further information can be found at the LHC@home message board.
[2025-11-26 03:40:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 03:40:07] Checking for apptainer binary...
[2025-11-26 03:40:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 03:40:07] Running /usr/bin/apptainer --version
[2025-11-26 03:40:07] apptainer version 1.4.1-1.1
[2025-11-26 03:40:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 03:40:07] thA337a
[2025-11-26 03:40:07] apptainer works
[2025-11-26 03:40:07] Set ATHENA_PROC_NUMBER=3
[2025-11-26 03:40:07] Set ATHENA_CORE_NUMBER=3
[2025-11-26 03:40:07] Starting ATLAS job with PandaID=6895324682
[2025-11-26 03:40:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 11:25:50]  *** The last 200 lines of the pilot log: ***
[2025-11-26 11:25:50] 2025-11-26 10:24:45,351 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 11:25:50] 2025-11-26 10:24:45,351 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 11:25:50] 2025-11-26 10:24:45,351 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 11:25:50] 2025-11-26 10:24:45,351 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 11:25:50] 2025-11-26 10:24:45,351 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 11:25:50] 2025-11-26 10:24:45,351 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 11:25:50] 2025-11-26 10:24:45,351 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 11:25:50] 2025-11-26 10:24:45,351 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 11:25:50] 2025-11-26 10:24:45,352 | INFO     | job 6895324682 has completed (purged errors)
[2025-11-26 11:25:50] 2025-11-26 10:24:45,352 | INFO     | overall cleanup function is called
[2025-11-26 11:25:50] 2025-11-26 10:24:45,598 | WARNING  | process 1747864 can no longer be monitored (due to stat problems) - aborting
[2025-11-26 11:25:50] 2025-11-26 10:24:45,627 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 11:25:50] 2025-11-26 10:24:45,663 | INFO     | number of running child processes to parent process 1747864: 1
[2025-11-26 11:25:50] 2025-11-26 10:24:45,663 | INFO     | maximum number of monitored processes: 8
[2025-11-26 11:25:50] 2025-11-26 10:24:45,663 | INFO     | aborting job monitoring since job object (job id=6895324682) has expired
[2025-11-26 11:25:50] 2025-11-26 10:24:46,361 | INFO     | --- collectZombieJob: --- 10, [1747864]
[2025-11-26 11:25:50] 2025-11-26 10:24:46,361 | INFO     | zombie collector waiting for pid 1747864
[2025-11-26 11:25:50] 2025-11-26 10:24:46,361 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 11:25:50] 2025-11-26 10:24:46,361 | INFO     | collected zombie processes
[2025-11-26 11:25:50] 2025-11-26 10:24:46,361 | INFO     | will attempt to kill all subprocesses of pid=1747864
[2025-11-26 11:25:50] 2025-11-26 10:24:46,402 | INFO     | process IDs to be killed: [1747864] (in reverse order)
[2025-11-26 11:25:50] 2025-11-26 10:24:46,425 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 11:25:50] 2025-11-26 10:24:46,426 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 11:25:50] 2025-11-26 10:24:46,427 | INFO     | did not find any defunct processes belonging to 1747864
[2025-11-26 11:25:50] 2025-11-26 10:24:46,428 | INFO     | did not find any defunct processes belonging to 1747864
[2025-11-26 11:25:50] 2025-11-26 10:24:46,428 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 11:25:50] 2025-11-26 10:24:46,429 | INFO     | ready for new job
[2025-11-26 11:25:50] 2025-11-26 10:24:46,429 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 11:25:50] 2025-11-26 10:24:46,430 | INFO     | ***************************************
[2025-11-26 11:25:50] 2025-11-26 10:24:46,430 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 11:25:50] 2025-11-26 10:24:46,430 | INFO     | ***************************************
[2025-11-26 11:25:50] 2025-11-26 10:24:46,430 | INFO     | 
[2025-11-26 11:25:50] 2025-11-26 10:24:46,430 | INFO     | architecture information:
[2025-11-26 11:25:50] 2025-11-26 10:24:46,430 | INFO     | executing command: cat /etc/os-release
[2025-11-26 11:25:50] 2025-11-26 10:24:46,439 | INFO     | cat /etc/os-release:
[2025-11-26 11:25:50] NAME="CentOS Linux"
[2025-11-26 11:25:50] VERSION="7 (Core)"
[2025-11-26 11:25:50] ID="centos"
[2025-11-26 11:25:50] ID_LIKE="rhel fedora"
[2025-11-26 11:25:50] VERSION_ID="7"
[2025-11-26 11:25:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 11:25:50] ANSI_COLOR="0;31"
[2025-11-26 11:25:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 11:25:50] HOME_URL="https://www.centos.org/"
[2025-11-26 11:25:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 11:25:50] 
[2025-11-26 11:25:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 11:25:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 11:25:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 11:25:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 11:25:50] 
[2025-11-26 11:25:50] 2025-11-26 10:24:46,439 | INFO     | ***************************************
[2025-11-26 11:25:50] 2025-11-26 10:24:46,942 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 11:25:50] 2025-11-26 10:24:46,954 | INFO     | sufficient remaining disk space (366784544768 B)
[2025-11-26 11:25:50] 2025-11-26 10:24:46,954 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 11:25:50] 2025-11-26 10:24:46,954 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 11:25:50] 2025-11-26 10:24:46,954 | INFO     | update_server=False
[2025-11-26 11:25:50] 2025-11-26 10:24:46,954 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 11:25:50] 2025-11-26 10:24:46,954 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-26 11:25:50] 2025-11-26 10:24:46,954 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:25:50] 2025-11-26 10:24:46,954 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:25:50] 2025-11-26 10:24:46,955 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 11:25:50] 2025-11-26 10:24:46,955 | INFO     | aborting loop
[2025-11-26 11:25:50] 2025-11-26 10:24:46,955 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 11:25:50] 2025-11-26 10:24:46,955 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 11:25:50] 2025-11-26 10:24:47,036 | INFO     | all payload control threads have been joined
[2025-11-26 11:25:50] 2025-11-26 10:24:47,473 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 11:25:50] 2025-11-26 10:24:47,603 | INFO     | all job control threads have been joined
[2025-11-26 11:25:50] 2025-11-26 10:24:47,805 | INFO     | all data control threads have been joined
[2025-11-26 11:25:50] 2025-11-26 10:24:47,957 | INFO     | [job] job monitor thread has finished
[2025-11-26 11:25:50] 2025-11-26 10:24:47,957 | INFO     | [job] queue monitor thread has finished
[2025-11-26 11:25:50] 2025-11-26 10:24:47,959 | INFO     | [job] retrieve thread has finished
[2025-11-26 11:25:50] 2025-11-26 10:24:48,042 | INFO     | [payload] control thread has finished
[2025-11-26 11:25:50] 2025-11-26 10:24:48,061 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 11:25:50] 2025-11-26 10:24:48,180 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 11:25:50] 2025-11-26 10:24:48,609 | INFO     | [job] control thread has finished
[2025-11-26 11:25:50] 2025-11-26 10:24:48,810 | INFO     | [data] control thread has finished
[2025-11-26 11:25:50] 2025-11-26 10:24:48,811 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 11:25:50] 2025-11-26 10:24:48,864 | INFO     | [data] copytool_in thread has finished
[2025-11-26 11:25:50] 2025-11-26 10:24:48,943 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 11:25:50] 2025-11-26 10:24:49,081 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 11:25:50] 2025-11-26 10:24:49,343 | INFO     | [payload] validate_post thread has finished
[2025-11-26 11:25:50] 2025-11-26 10:24:49,386 | INFO     | [job] validate thread has finished
[2025-11-26 11:25:50] 2025-11-26 10:24:49,450 | INFO     | [payload] failed_post thread has finished
[2025-11-26 11:25:50] 2025-11-26 10:24:49,479 | INFO     | [data] copytool_out thread has finished
[2025-11-26 11:25:50] 2025-11-26 10:24:52,950 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 11:25:50] 2025-11-26 10:25:11,732 [wrapper] supervise_pilot (15 min periods counter: 32)
[2025-11-26 11:25:50] 2025-11-26 10:25:44,206 | INFO     | [monitor] cgroup control has ended
[2025-11-26 11:25:50] 2025-11-26 10:25:44,893 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139943440058176)>', '<ExcThread(monitor, started 139943087159040)>']
[2025-11-26 11:25:50] 2025-11-26 10:25:45,262 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 11:25:50] 2025-11-26 10:25:45,263 | INFO     | [monitor] control thread has ended
[2025-11-26 11:25:50] 2025-11-26 10:25:49,918 | INFO     | all workflow threads have been joined
[2025-11-26 11:25:50] 2025-11-26 10:25:49,919 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 11:25:50] 2025-11-26 10:25:49,919 | INFO     | traces error code: 0
[2025-11-26 11:25:50] 2025-11-26 10:25:49,919 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 11:25:50] 2025-11-26 10:25:49,968 [wrapper] ==== pilot stdout END ====
[2025-11-26 11:25:50] 2025-11-26 10:25:49,970 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 11:25:50] 2025-11-26 10:25:49,972 [wrapper] pilotpid: 1741422
[2025-11-26 11:25:50] 2025-11-26 10:25:49,975 [wrapper] Pilot exit status: 0
[2025-11-26 11:25:50] 2025-11-26 10:25:49,981 [wrapper] pandaids: 6895324682
[2025-11-26 11:25:50] 2025-11-26 10:25:49,997 [wrapper] cleanup supervisor_pilot 1798846 1741423
[2025-11-26 11:25:50] 2025-11-26 10:25:49,999 [wrapper] Test setup, not cleaning
[2025-11-26 11:25:50] 2025-11-26 10:25:50,002 [wrapper] apfmon messages muted
[2025-11-26 11:25:50] 2025-11-26 10:25:50,004 [wrapper] ==== wrapper stdout END ====
[2025-11-26 11:25:50] 2025-11-26 10:25:50,006 [wrapper] ==== wrapper stderr END ====
[2025-11-26 11:25:50]  *** Error codes and diagnostics ***
[2025-11-26 11:25:50]     "exeErrorCode": 0,
[2025-11-26 11:25:50]     "exeErrorDiag": "",
[2025-11-26 11:25:50]     "pilotErrorCode": 0,
[2025-11-26 11:25:50]     "pilotErrorDiag": "",
[2025-11-26 11:25:50]  *** Listing of results directory ***
[2025-11-26 11:25:50] total 1310660
[2025-11-26 11:25:50] -rw-r--r-- 1 boinc boinc    598293 Nov  6 09:41 pilot3.tar.gz
[2025-11-26 11:25:50] -rwx------ 1 boinc boinc     36292 Nov 21 15:35 runpilot2-wrapper.sh
[2025-11-26 11:25:50] -rw-r--r-- 1 boinc boinc      5112 Nov 21 15:35 queuedata.json
[2025-11-26 11:25:50] -rw-r--r-- 1 boinc boinc       100 Nov 26 03:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 11:25:50] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 03:40 run_atlas
[2025-11-26 11:25:50] -rw-r--r-- 1 boinc boinc       105 Nov 26 03:40 job.xml
[2025-11-26 11:25:50] -rw-r--r-- 2 boinc boinc 409826782 Nov 26 03:40 EVNT.47483658._000029.pool.root.1
[2025-11-26 11:25:50] -rw-r--r-- 2 boinc boinc    611276 Nov 26 03:40 input.tar.gz
[2025-11-26 11:25:50] -rw-r--r-- 2 boinc boinc     15847 Nov 26 03:40 start_atlas.sh
[2025-11-26 11:25:50] drwxrwx--x 2 boinc boinc      4096 Nov 26 03:40 shared
[2025-11-26 11:25:50] -rw-r--r-- 1 boinc boinc         0 Nov 26 03:40 boinc_setup_complete
[2025-11-26 11:25:50] -rw-r--r-- 1 boinc boinc      6448 Nov 26 03:40 init_data.xml
[2025-11-26 11:25:50] -rw-r--r-- 1 boinc boinc         0 Nov 26 03:40 boinc_lockfile
[2025-11-26 11:25:50] -rw-r--r-- 1 boinc boinc      2784 Nov 26 03:40 pandaJob.out
[2025-11-26 11:25:50] -rw------- 1 boinc boinc    991877 Nov 26 03:40 agis_schedconf.cvmfs.json
[2025-11-26 11:25:50] drwx------ 7 boinc boinc      4096 Nov 26 03:40 pilot3
[2025-11-26 11:25:50] -rw-r--r-- 1 boinc boinc       531 Nov 26 11:20 boinc_task_state.xml
[2025-11-26 11:25:50] -rw------- 1 boinc boinc 918167973 Nov 26 11:24 HITS.47556137._000283.pool.root.1
[2025-11-26 11:25:50] -rw------- 1 boinc boinc        95 Nov 26 11:24 pilot_heartbeat.json
[2025-11-26 11:25:50] -rw------- 1 boinc boinc      1022 Nov 26 11:24 memory_monitor_summary.json
[2025-11-26 11:25:50] -rw------- 1 boinc boinc   1516240 Nov 26 11:24 agis_ddmendpoints.agis.ALL.json
[2025-11-26 11:25:50] -rw------- 1 boinc boinc   1154006 Nov 26 11:24 log.47556137._000283.job.log.tgz.1
[2025-11-26 11:25:50] -rw------- 1 boinc boinc      8559 Nov 26 11:24 heartbeat.json
[2025-11-26 11:25:50] -rw-r--r-- 1 boinc boinc      8192 Nov 26 11:25 boinc_mmap_file
[2025-11-26 11:25:50] -rw-r--r-- 1 boinc boinc        28 Nov 26 11:25 wrapper_checkpoint.txt
[2025-11-26 11:25:50] -rw------- 1 boinc boinc      4556 Nov 26 11:25 pilotlog.txt
[2025-11-26 11:25:50] -rw------- 1 boinc boinc   3931095 Nov 26 11:25 log.47556137._000283.job.log.1
[2025-11-26 11:25:50] -rw------- 1 boinc boinc       353 Nov 26 11:25 output.list
[2025-11-26 11:25:50] -rw-r--r-- 1 boinc boinc       620 Nov 26 11:25 runtime_log
[2025-11-26 11:25:50] -rw------- 1 boinc boinc   5099520 Nov 26 11:25 result.tar.gz
[2025-11-26 11:25:50] -rw-r--r-- 1 boinc boinc      8903 Nov 26 11:25 runtime_log.err
[2025-11-26 11:25:50] -rw------- 1 boinc boinc       666 Nov 26 11:25 1s8NDmHPhg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTUJKDmFwL9Bn.diag
[2025-11-26 11:25:50] -rw-r--r-- 1 boinc boinc     12499 Nov 26 11:25 stderr.txt
[2025-11-26 11:25:50] HITS file was successfully produced:
[2025-11-26 11:25:50] -rw------- 1 boinc boinc 918167973 Nov 26 11:24 shared/HITS.pool.root.1
[2025-11-26 11:25:50]  *** Contents of shared directory: ***
[2025-11-26 11:25:50] total 1302480
[2025-11-26 11:25:50] -rw-r--r-- 2 boinc boinc 409826782 Nov 26 03:40 ATLAS.root_0
[2025-11-26 11:25:50] -rw-r--r-- 2 boinc boinc    611276 Nov 26 03:40 input.tar.gz
[2025-11-26 11:25:50] -rw-r--r-- 2 boinc boinc     15847 Nov 26 03:40 start_atlas.sh
[2025-11-26 11:25:50] -rw------- 1 boinc boinc 918167973 Nov 26 11:24 HITS.pool.root.1
[2025-11-26 11:25:50] -rw------- 1 boinc boinc   5099520 Nov 26 11:25 result.tar.gz
11:25:51 (1737702): run_atlas exited; CPU time 82163.633565
11:25:51 (1737702): called boinc_finish(0)

</stderr_txt>
]]>

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