Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
13:22:46 (1264232): wrapper (7.7.26015): starting
13:22:46 (1264232): wrapper: running run_atlas (--nthreads 10)
[2025-11-24 13:22:46] Arguments: --nthreads 10
[2025-11-24 13:22:46] Threads: 10
[2025-11-24 13:22:46] Checking for CVMFS
[2025-11-24 13:22:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 13:22:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 13:22:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 13:22:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 13:22:47] 2.13.3.0 7351 8987 50824 153259 3 81 2817440 4096000 9698 130560 0 27854185 99.979 615229 752 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-24 13:22:47] CVMFS is ok
[2025-11-24 13:22:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 13:22:47] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-24 13:22:47] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-24 13:22:47] Further information can be found at the LHC@home message board.
[2025-11-24 13:22:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 13:22:47] Checking for apptainer binary...
[2025-11-24 13:22:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 13:22:47] Running /usr/bin/apptainer --version
[2025-11-24 13:22:47] apptainer version 1.4.2
[2025-11-24 13:22:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 13:22:48] 3950x-linux
[2025-11-24 13:22:48] apptainer works
[2025-11-24 13:22:48] Set ATHENA_PROC_NUMBER=10
[2025-11-24 13:22:48] Set ATHENA_CORE_NUMBER=10
[2025-11-24 13:22:48] Starting ATLAS job with PandaID=6895350471
[2025-11-24 13:22:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc225/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 11:27:42]  *** The last 200 lines of the pilot log: ***
[2025-11-25 11:27:42] 2025-11-25 19:26:44,227 | INFO     | time since job start (79402s) is within the limit (172800.0s)
[2025-11-25 11:27:42] 2025-11-25 19:26:44,487 | INFO     | monitor loop #5140: job 0:6895350471 is in state 'finished'
[2025-11-25 11:27:42] 2025-11-25 19:26:44,487 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 11:27:42] 2025-11-25 19:26:46,234 | INFO     | time since job start (79404s) is within the limit (172800.0s)
[2025-11-25 11:27:42] 2025-11-25 19:26:46,992 | INFO     | monitor loop #5141: job 0:6895350471 is in state 'finished'
[2025-11-25 11:27:42] 2025-11-25 19:26:46,992 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 11:27:42] 2025-11-25 19:26:48,239 | INFO     | time since job start (79406s) is within the limit (172800.0s)
[2025-11-25 11:27:42] 2025-11-25 19:26:49,497 | INFO     | monitor loop #5142: job 0:6895350471 is in state 'finished'
[2025-11-25 11:27:42] 2025-11-25 19:26:49,497 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 11:27:42] 2025-11-25 19:26:50,248 | INFO     | time since job start (79408s) is within the limit (172800.0s)
[2025-11-25 11:27:42] 2025-11-25 19:26:52,000 | INFO     | monitor loop #5143: job 0:6895350471 is in state 'finished'
[2025-11-25 11:27:42] 2025-11-25 19:26:52,000 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 11:27:42] 2025-11-25 19:26:52,253 | INFO     | time since job start (79410s) is within the limit (172800.0s)
[2025-11-25 11:27:42] 2025-11-25 19:26:54,258 | INFO     | time since job start (79412s) is within the limit (172800.0s)
[2025-11-25 11:27:42] 2025-11-25 19:26:54,509 | INFO     | monitor loop #5144: job 0:6895350471 is in state 'finished'
[2025-11-25 11:27:42] 2025-11-25 19:26:54,509 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 11:27:42] 2025-11-25 19:26:55,746 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 11:27:42] 2025-11-25 19:26:55,761 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3249.7837812499993
[2025-11-25 11:27:42] 2025-11-25 19:26:55,774 | INFO     | using path: /var/lib/multiboinc/boinc225/slots/1/PanDA_Pilot-6895350471/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 11:27:42] 2025-11-25 19:26:55,781 | INFO     | extracted standard info from prmon json
[2025-11-25 11:27:42] 2025-11-25 19:26:55,781 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 11:27:42] 2025-11-25 19:26:55,781 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 11:27:42] 2025-11-25 19:26:55,834 | INFO     | fitting pss+swap vs Time
[2025-11-25 11:27:42] 2025-11-25 19:26:55,836 | INFO     | sum of square deviations: 681250645435.0767
[2025-11-25 11:27:42] 2025-11-25 19:26:55,944 | INFO     | sum of deviations: 2919059513421.224
[2025-11-25 11:27:42] 2025-11-25 19:26:55,945 | INFO     | mean x: 1764059101.2615385
[2025-11-25 11:27:42] 2025-11-25 19:26:55,945 | INFO     | mean y: 3134494.2846153844
[2025-11-25 11:27:42] 2025-11-25 19:26:55,945 | INFO     | intersect: -7555601099.259167
[2025-11-25 11:27:42] 2025-11-25 19:26:55,955 | INFO     | chi2: 14.358877635948403
[2025-11-25 11:27:42] 2025-11-25 19:26:55,956 | INFO     | sum of square deviations: 673421720229.058
[2025-11-25 11:27:42] 2025-11-25 19:26:56,039 | INFO     | sum of deviations: 3392998807525.9424
[2025-11-25 11:27:42] 2025-11-25 19:26:56,039 | INFO     | mean x: 1764058948.7760618
[2025-11-25 11:27:42] 2025-11-25 19:26:56,039 | INFO     | mean y: 3143723.8756756755
[2025-11-25 11:27:42] 2025-11-25 19:26:56,039 | INFO     | intersect: -8884971597.927061
[2025-11-25 11:27:42] 2025-11-25 19:26:56,040 | INFO     | chi2: 11.165302715636155
[2025-11-25 11:27:42] 2025-11-25 19:26:56,040 | INFO     | current chi2=11.165302715636155 (change=22.241118012712366 %)
[2025-11-25 11:27:42] 2025-11-25 19:26:56,040 | INFO     | right removable region: 1294
[2025-11-25 11:27:42] 2025-11-25 19:26:56,045 | INFO     | sum of square deviations: 673418737329.0579
[2025-11-25 11:27:42] 2025-11-25 19:26:56,142 | INFO     | sum of deviations: 2405710337630.8926
[2025-11-25 11:27:42] 2025-11-25 19:26:56,143 | INFO     | mean x: 1764059253.7760618
[2025-11-25 11:27:42] 2025-11-25 19:26:56,143 | INFO     | mean y: 3144488.403088803
[2025-11-25 11:27:42] 2025-11-25 19:26:56,143 | INFO     | intersect: -6298752604.38425
[2025-11-25 11:27:42] 2025-11-25 19:26:56,144 | INFO     | chi2: 11.009218767698073
[2025-11-25 11:27:42] 2025-11-25 19:26:56,144 | INFO     | current chi2=11.009218767698073 (change=23.32813854381095 %)
[2025-11-25 11:27:42] 2025-11-25 19:26:56,150 | INFO     | left removable region: 10
[2025-11-25 11:27:42] 2025-11-25 19:26:56,151 | INFO     | sum of square deviations: 656404049274.7131
[2025-11-25 11:27:42] 2025-11-25 19:26:56,256 | INFO     | sum of deviations: 2660398920653.307
[2025-11-25 11:27:42] 2025-11-25 19:26:56,257 | INFO     | mean x: 1764059223.3060749
[2025-11-25 11:27:42] 2025-11-25 19:26:56,257 | INFO     | mean y: 3161691.2943925234
[2025-11-25 11:27:42] 2025-11-25 19:26:56,257 | INFO     | intersect: -7146552358.820908
[2025-11-25 11:27:42] 2025-11-25 19:26:56,258 | INFO     | chi2: 6.004610753478908
[2025-11-25 11:27:42] 2025-11-25 19:26:56,258 | INFO     | current memory leak: 4.05 B/s (using 1284 data points, chi2=6.00)
[2025-11-25 11:27:42] 2025-11-25 19:26:56,259 | INFO     | could have reported an average CPU frequency of 3249 MHz (47 samples)
[2025-11-25 11:27:42] 2025-11-25 19:26:56,259 | INFO     | ..............................
[2025-11-25 11:27:42] 2025-11-25 19:26:56,260 | INFO     | . Timing measurements:
[2025-11-25 11:27:42] 2025-11-25 19:26:56,260 | INFO     | . get job = 0 s
[2025-11-25 11:27:42] 2025-11-25 19:26:56,260 | INFO     | . initial setup = 5 s
[2025-11-25 11:27:42] 2025-11-25 19:26:56,260 | INFO     | . payload setup = 20 s
[2025-11-25 11:27:42] 2025-11-25 19:26:56,260 | INFO     | . stage-in = 0 s
[2025-11-25 11:27:42] 2025-11-25 19:26:56,260 | INFO     | . payload execution = 79313 s
[2025-11-25 11:27:42] 2025-11-25 19:26:56,260 | INFO     | . stage-out = 15 s
[2025-11-25 11:27:42] 2025-11-25 19:26:56,260 | INFO     | . log creation = 2 s
[2025-11-25 11:27:42] 2025-11-25 19:26:56,260 | INFO     | ..............................
[2025-11-25 11:27:42] 2025-11-25 19:26:56,278 | INFO     | time since job start (79414s) is within the limit (172800.0s)
[2025-11-25 11:27:42] 2025-11-25 19:26:56,607 | INFO     | 
[2025-11-25 11:27:42] 2025-11-25 19:26:56,607 | INFO     | job summary report
[2025-11-25 11:27:42] 2025-11-25 19:26:56,608 | INFO     | --------------------------------------------------
[2025-11-25 11:27:42] 2025-11-25 19:26:56,608 | INFO     | PanDA job id: 6895350471
[2025-11-25 11:27:42] 2025-11-25 19:26:56,608 | INFO     | task id: 47556137
[2025-11-25 11:27:42] 2025-11-25 19:26:56,608 | INFO     | errors: (none)
[2025-11-25 11:27:42] 2025-11-25 19:26:56,608 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 11:27:42] 2025-11-25 19:26:56,608 | INFO     | pilot state: finished 
[2025-11-25 11:27:42] 2025-11-25 19:26:56,608 | INFO     | transexitcode: 0
[2025-11-25 11:27:42] 2025-11-25 19:26:56,608 | INFO     | exeerrorcode: 0
[2025-11-25 11:27:42] 2025-11-25 19:26:56,608 | INFO     | exeerrordiag: 
[2025-11-25 11:27:42] 2025-11-25 19:26:56,608 | INFO     | exitcode: 0
[2025-11-25 11:27:42] 2025-11-25 19:26:56,608 | INFO     | exitmsg: OK
[2025-11-25 11:27:42] 2025-11-25 19:26:56,608 | INFO     | cpuconsumptiontime: 218562 s
[2025-11-25 11:27:42] 2025-11-25 19:26:56,608 | INFO     | nevents: 1000
[2025-11-25 11:27:42] 2025-11-25 19:26:56,608 | INFO     | neventsw: 0
[2025-11-25 11:27:42] 2025-11-25 19:26:56,608 | INFO     | pid: 1274819
[2025-11-25 11:27:42] 2025-11-25 19:26:56,609 | INFO     | pgrp: 1274819
[2025-11-25 11:27:42] 2025-11-25 19:26:56,609 | INFO     | corecount: 10
[2025-11-25 11:27:42] 2025-11-25 19:26:56,609 | INFO     | event service: False
[2025-11-25 11:27:42] 2025-11-25 19:26:56,609 | INFO     | sizes: {0: 2284101, 1: 2284129, 2: 2284300, 12: 2284328, 17: 2284618, 23: 2284646, 79338: 2348716, 79354: 2357799, 79374: 2357989}
[2025-11-25 11:27:42] 2025-11-25 19:26:56,609 | INFO     | --------------------------------------------------
[2025-11-25 11:27:42] 2025-11-25 19:26:56,609 | INFO     | 
[2025-11-25 11:27:42] 2025-11-25 19:26:56,609 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc225/slots/1
[2025-11-25 11:27:42] 2025-11-25 19:26:56,691 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 11:27:42] 2025-11-25 19:26:56,692 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 11:27:42] 2025-11-25 19:26:56,692 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 11:27:42] 2025-11-25 19:26:56,692 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 11:27:42] 2025-11-25 19:26:56,692 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 11:27:42] 2025-11-25 19:26:56,692 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 11:27:42] 2025-11-25 19:26:56,692 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 11:27:42] 2025-11-25 19:26:56,692 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 11:27:42] 2025-11-25 19:26:56,692 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 11:27:42] 2025-11-25 19:26:56,692 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 11:27:42] 2025-11-25 19:26:56,692 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 11:27:42] 2025-11-25 19:26:56,693 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 11:27:42] 2025-11-25 19:26:56,693 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 11:27:42] 2025-11-25 19:26:56,693 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 11:27:42] 2025-11-25 19:26:56,693 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 11:27:42] 2025-11-25 19:26:56,693 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 11:27:42] 2025-11-25 19:26:56,693 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 11:27:42] 2025-11-25 19:26:56,693 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 11:27:42] 2025-11-25 19:26:56,693 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 11:27:42] 2025-11-25 19:26:56,693 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 11:27:42] 2025-11-25 19:26:56,693 | INFO     | job 6895350471 has completed (purged errors)
[2025-11-25 11:27:42] 2025-11-25 19:26:56,693 | INFO     | overall cleanup function is called
[2025-11-25 11:27:42] 2025-11-25 19:26:57,756 | INFO     | --- collectZombieJob: --- 10, [1274819]
[2025-11-25 11:27:42] 2025-11-25 19:26:57,756 | INFO     | zombie collector waiting for pid 1274819
[2025-11-25 11:27:42] 2025-11-25 19:26:57,757 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 11:27:42] 2025-11-25 19:26:57,757 | INFO     | collected zombie processes
[2025-11-25 11:27:42] 2025-11-25 19:26:57,757 | INFO     | will attempt to kill all subprocesses of pid=1274819
[2025-11-25 11:27:42] 2025-11-25 19:26:58,823 | INFO     | process IDs to be killed: [1274819] (in reverse order)
[2025-11-25 11:27:42] 2025-11-25 19:26:59,076 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 11:27:42] 2025-11-25 19:26:59,077 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 11:27:42] 2025-11-25 19:26:59,094 | INFO     | did not find any defunct processes belonging to 1274819
[2025-11-25 11:27:42] 2025-11-25 19:26:59,109 | INFO     | did not find any defunct processes belonging to 1274819
[2025-11-25 11:27:42] 2025-11-25 19:26:59,113 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 11:27:42] 2025-11-25 19:26:59,113 | INFO     | ready for new job
[2025-11-25 11:27:42] 2025-11-25 19:26:59,113 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 11:27:42] 2025-11-25 19:26:59,125 | INFO     | ***************************************
[2025-11-25 11:27:42] 2025-11-25 19:26:59,126 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 11:27:42] 2025-11-25 19:26:59,126 | INFO     | ***************************************
[2025-11-25 11:27:42] 2025-11-25 19:26:59,126 | INFO     | 
[2025-11-25 11:27:42] 2025-11-25 19:26:59,128 | INFO     | architecture information:
[2025-11-25 11:27:42] 2025-11-25 19:26:59,131 | INFO     | executing command: cat /etc/os-release
[2025-11-25 11:27:42] 2025-11-25 19:26:59,170 | INFO     | cat /etc/os-release:
[2025-11-25 11:27:42] NAME="CentOS Linux"
[2025-11-25 11:27:42] VERSION="7 (Core)"
[2025-11-25 11:27:42] ID="centos"
[2025-11-25 11:27:42] ID_LIKE="rhel fedora"
[2025-11-25 11:27:42] VERSION_ID="7"
[2025-11-25 11:27:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 11:27:42] ANSI_COLOR="0;31"
[2025-11-25 11:27:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 11:27:42] HOME_URL="https://www.centos.org/"
[2025-11-25 11:27:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 11:27:42] 
[2025-11-25 11:27:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 11:27:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 11:27:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 11:27:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 11:27:42] 
[2025-11-25 11:27:42] 2025-11-25 19:26:59,170 | INFO     | ***************************************
[2025-11-25 11:27:42] 2025-11-25 19:26:59,679 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc225/slots/1
[2025-11-25 11:27:42] 2025-11-25 19:26:59,754 | INFO     | sufficient remaining disk space (65065189376 B)
[2025-11-25 11:27:42] 2025-11-25 19:26:59,754 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 11:27:42] 2025-11-25 19:26:59,754 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 11:27:42] 2025-11-25 19:26:59,754 | INFO     | update_server=False
[2025-11-25 11:27:42] 2025-11-25 19:26:59,754 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 11:27:42] 2025-11-25 19:26:59,754 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 11:27:42] 2025-11-25 19:27:00,121 | INFO     | all data control threads have been joined
[2025-11-25 11:27:42] 2025-11-25 19:27:00,435 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 11:27:42] 2025-11-25 19:27:00,530 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 11:27:42] 2025-11-25 19:27:00,531 | INFO     | aborting loop
[2025-11-25 11:27:42] 2025-11-25 19:27:00,760 | INFO     | [job] retrieve thread has finished
[2025-11-25 11:27:42] 2025-11-25 19:27:00,851 | INFO     | all job control threads have been joined
[2025-11-25 11:27:42] 2025-11-25 19:27:00,852 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 11:27:42] 2025-11-25 19:27:00,854 | INFO     | [data] copytool_in thread has finished
[2025-11-25 11:27:42] 2025-11-25 19:27:00,855 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 11:27:42] 2025-11-25 19:27:00,855 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 11:27:42] 2025-11-25 19:27:00,857 | INFO     | all payload control threads have been joined
[2025-11-25 11:27:42] 2025-11-25 19:27:00,863 | INFO     | [payload] failed_post thread has finished
[2025-11-25 11:27:42] 2025-11-25 19:27:00,871 | INFO     | [job] validate thread has finished
[2025-11-25 11:27:42] 2025-11-25 19:27:01,126 | INFO     | [data] control thread has finished
[2025-11-25 11:27:42] 2025-11-25 19:27:01,537 | INFO     | [job] job monitor thread has finished
[2025-11-25 11:27:42] 2025-11-25 19:27:01,625 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 11:27:42] 2025-11-25 19:27:01,685 | INFO     | [payload] validate_post thread has finished
[2025-11-25 11:27:42] 2025-11-25 19:27:01,759 | INFO     | [data] copytool_out thread has finished
[2025-11-25 11:27:42] 2025-11-25 19:27:01,856 | INFO     | [job] control thread has finished
[2025-11-25 11:27:42] 2025-11-25 19:27:01,862 | INFO     | [payload] control thread has finished
[2025-11-25 11:27:42] 2025-11-25 19:27:01,879 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 11:27:42] 2025-11-25 19:27:02,630 | INFO     | [job] queue monitor thread has finished
[2025-11-25 11:27:42] 2025-11-25 19:27:04,443 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 11:27:42] 2025-11-25 19:27:30,286 | INFO     | PID=1268092 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 11:27:42] 2025-11-25 19:27:30,286 | INFO     | .. there are 12 such processes running
[2025-11-25 11:27:42] 2025-11-25 19:27:30,287 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 11:27:42] 2025-11-25 19:27:30,287 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 11:27:42] 2025-11-25 19:27:30,287 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 11:27:42] 2025-11-25 19:27:34,932 | INFO     | [monitor] cgroup control has ended
[2025-11-25 11:27:42] 2025-11-25 19:27:36,679 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139813446354752)>', '<ExcThread(monitor, started 139812585596672)>']
[2025-11-25 11:27:42] 2025-11-25 19:27:37,327 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 11:27:42] 2025-11-25 19:27:37,327 | INFO     | [monitor] control thread has ended
[2025-11-25 11:27:42] 2025-11-25 19:27:41,704 | INFO     | all workflow threads have been joined
[2025-11-25 11:27:42] 2025-11-25 19:27:41,704 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 11:27:42] 2025-11-25 19:27:41,705 | INFO     | traces error code: 0
[2025-11-25 11:27:42] 2025-11-25 19:27:41,705 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 11:27:42] 2025-11-25 19:27:42,228 [wrapper] ==== pilot stdout END ====
[2025-11-25 11:27:42] 2025-11-25 19:27:42,260 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 11:27:42] 2025-11-25 19:27:42,276 [wrapper] pilotpid: 1268092
[2025-11-25 11:27:42] 2025-11-25 19:27:42,292 [wrapper] Pilot exit status: 0
[2025-11-25 11:27:42] 2025-11-25 19:27:42,359 [wrapper] pandaids: 6895350471
[2025-11-25 11:27:42] 2025-11-25 19:27:42,559 [wrapper] cleanup supervisor_pilot 2703780 1268093
[2025-11-25 11:27:42] 2025-11-25 19:27:42,572 [wrapper] Test setup, not cleaning
[2025-11-25 11:27:42] 2025-11-25 19:27:42,593 [wrapper] apfmon messages muted
[2025-11-25 11:27:42] 2025-11-25 19:27:42,605 [wrapper] ==== wrapper stdout END ====
[2025-11-25 11:27:42] 2025-11-25 19:27:42,613 [wrapper] ==== wrapper stderr END ====
[2025-11-25 11:27:42]  *** Error codes and diagnostics ***
[2025-11-25 11:27:43]     "exeErrorCode": 0,
[2025-11-25 11:27:43]     "exeErrorDiag": "",
[2025-11-25 11:27:43]     "pilotErrorCode": 0,
[2025-11-25 11:27:43]     "pilotErrorDiag": "",
[2025-11-25 11:27:43]  *** Listing of results directory ***
[2025-11-25 11:27:43] total 1325996
[2025-11-25 11:27:43] -rw-r--r-- 1 root root    576529 Nov 22 13:11 pilot3.tar.gz
[2025-11-25 11:27:43] -rw-r--r-- 1 root root      5112 Nov 22 13:14 queuedata.json
[2025-11-25 11:27:43] -rwx------ 1 4871 1028     36292 Nov 22 13:18 runpilot2-wrapper.sh
[2025-11-25 11:27:43] -rw-r--r-- 1 root root       100 Nov 24 13:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 11:27:43] -rwxr-xr-x 1 root root      7986 Nov 24 13:22 run_atlas
[2025-11-25 11:27:43] -rw-r--r-- 1 root root       105 Nov 24 13:22 job.xml
[2025-11-25 11:27:43] -rw-r--r-- 2 root root 407307266 Nov 24 13:22 EVNT.47483658._000512.pool.root.1
[2025-11-25 11:27:43] drwxrwx--x 2 root root      4096 Nov 24 13:22 shared
[2025-11-25 11:27:43] -rw-r--r-- 2 root root    590106 Nov 24 13:22 input.tar.gz
[2025-11-25 11:27:43] -rw-r--r-- 2 root root     15847 Nov 24 13:22 start_atlas.sh
[2025-11-25 11:27:43] -rw-r--r-- 1 root root         0 Nov 24 13:22 boinc_setup_complete
[2025-11-25 11:27:43] -rw-r--r-- 1 root root      9235 Nov 24 13:22 init_data.xml
[2025-11-25 11:27:43] -rw-r--r-- 1 root root         0 Nov 24 13:22 boinc_lockfile
[2025-11-25 11:27:43] -rw-r--r-- 1 root root      2784 Nov 24 13:22 pandaJob.out
[2025-11-25 11:27:43] -rw------- 1 root root    991801 Nov 24 13:23 agis_schedconf.cvmfs.json
[2025-11-25 11:27:43] drwxr-xr-x 5  320  320      4096 Nov 24 13:23 pilot3
[2025-11-25 11:27:43] -rw-r--r-- 1 root root       533 Nov 25 10:57 boinc_task_state.xml
[2025-11-25 11:27:43] -rw------- 1 root root 919754547 Nov 25 11:24 HITS.47556137._005077.pool.root.1
[2025-11-25 11:27:43] -rw------- 1 root root      1048 Nov 25 11:26 memory_monitor_summary.json
[2025-11-25 11:27:43] -rw------- 1 root root   1516240 Nov 25 11:26 agis_ddmendpoints.agis.ALL.json
[2025-11-25 11:27:43] -rw------- 1 root root   2619622 Nov 25 11:26 log.47556137._005077.job.log.tgz.1
[2025-11-25 11:27:43] -rw------- 1 root root      8604 Nov 25 11:26 heartbeat.json
[2025-11-25 11:27:43] -rw-r--r-- 1 root root      8192 Nov 25 11:27 boinc_mmap_file
[2025-11-25 11:27:43] -rw-r--r-- 1 root root        29 Nov 25 11:27 wrapper_checkpoint.txt
[2025-11-25 11:27:43] -rw------- 1 root root        95 Nov 25 11:27 pilot_heartbeat.json
[2025-11-25 11:27:43] -rw------- 1 root root      4838 Nov 25 11:27 pilotlog.txt
[2025-11-25 11:27:43] -rw------- 1 root root  10798625 Nov 25 11:27 log.47556137._005077.job.log.1
[2025-11-25 11:27:43] -rw------- 1 root root       353 Nov 25 11:27 output.list
[2025-11-25 11:27:43] -rw-r--r-- 1 root root       620 Nov 25 11:27 runtime_log
[2025-11-25 11:27:43] -rw------- 1 root root  13434880 Nov 25 11:27 result.tar.gz
[2025-11-25 11:27:43] -rw-r--r-- 1 root root      9021 Nov 25 11:27 runtime_log.err
[2025-11-25 11:27:43] -rw------- 1 root root       663 Nov 25 11:27 oMOODmABAh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmuIIKDmuzA4Jo.diag
[2025-11-25 11:27:43] -rw-r--r-- 1 root root     21893 Nov 25 11:27 stderr.txt
[2025-11-25 11:27:43] HITS file was successfully produced:
[2025-11-25 11:27:43] -rw------- 1 root root 919754547 Nov 25 11:24 shared/HITS.pool.root.1
[2025-11-25 11:27:43]  *** Contents of shared directory: ***
[2025-11-25 11:27:43] total 1309688
[2025-11-25 11:27:43] -rw-r--r-- 2 root root 407307266 Nov 24 13:22 ATLAS.root_0
[2025-11-25 11:27:43] -rw-r--r-- 2 root root    590106 Nov 24 13:22 input.tar.gz
[2025-11-25 11:27:43] -rw-r--r-- 2 root root     15847 Nov 24 13:22 start_atlas.sh
[2025-11-25 11:27:43] -rw------- 1 root root 919754547 Nov 25 11:24 HITS.pool.root.1
[2025-11-25 11:27:43] -rw------- 1 root root  13434880 Nov 25 11:27 result.tar.gz
11:27:44 (1264232): run_atlas exited; CPU time 218746.688566
11:27:44 (1264232): called boinc_finish(0)

</stderr_txt>
]]>

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