Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:36:07 (27500): wrapper (7.7.26015): starting
07:36:07 (27500): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 07:36:07] Arguments: --nthreads 8
[2025-11-26 07:36:07] Threads: 8
[2025-11-26 07:36:07] Checking for CVMFS
[2025-11-26 07:36:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 07:36:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 07:36:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 07:36:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 07:36:11] 2.11.2.0 23125 171823 135200 153312 1 130 21274518 25165825 1288 130560 10 57466694 99.894 27412820 2002 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 07:36:11] CVMFS is ok
[2025-11-26 07:36:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 07:36:11] Checking for apptainer binary...
[2025-11-26 07:36:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 07:36:11] Running /usr/bin/apptainer --version
[2025-11-26 07:36:11] apptainer version 1.3.2-1.el7
[2025-11-26 07:36:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 07:36:20] cg-vwn409.simple-grid.lan
[2025-11-26 07:36:20] apptainer works
[2025-11-26 07:36:20] Set ATHENA_PROC_NUMBER=8
[2025-11-26 07:36:20] Set ATHENA_CORE_NUMBER=8
[2025-11-26 07:36:20] Starting ATLAS job with PandaID=6895350313
[2025-11-26 07:36:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 07:15:21]  *** The last 200 lines of the pilot log: ***
[2025-11-27 07:15:21] 2025-11-27 06:14:18,218 | INFO     | time since job start (84875s) is within the limit (172800.0s)
[2025-11-27 07:15:21] 2025-11-27 06:14:19,868 | INFO     | monitor loop #5713: job 0:6895350313 is in state 'finished'
[2025-11-27 07:15:21] 2025-11-27 06:14:19,868 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:15:21] 2025-11-27 06:14:20,225 | INFO     | time since job start (84877s) is within the limit (172800.0s)
[2025-11-27 07:15:21] 2025-11-27 06:14:22,230 | INFO     | time since job start (84879s) is within the limit (172800.0s)
[2025-11-27 07:15:21] 2025-11-27 06:14:22,230 | INFO     | 84885s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-27 07:15:21] 2025-11-27 06:14:22,381 | INFO     | monitor loop #5714: job 0:6895350313 is in state 'finished'
[2025-11-27 07:15:21] 2025-11-27 06:14:22,381 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:15:21] 2025-11-27 06:14:24,238 | INFO     | time since job start (84881s) is within the limit (172800.0s)
[2025-11-27 07:15:21] 2025-11-27 06:14:24,885 | INFO     | monitor loop #5715: job 0:6895350313 is in state 'finished'
[2025-11-27 07:15:21] 2025-11-27 06:14:24,885 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:15:21] 2025-11-27 06:14:26,244 | INFO     | time since job start (84883s) is within the limit (172800.0s)
[2025-11-27 07:15:21] 2025-11-27 06:14:27,398 | INFO     | monitor loop #5716: job 0:6895350313 is in state 'finished'
[2025-11-27 07:15:21] 2025-11-27 06:14:27,398 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:15:21] 2025-11-27 06:14:28,250 | INFO     | time since job start (84885s) is within the limit (172800.0s)
[2025-11-27 07:15:21] 2025-11-27 06:14:29,350 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 07:15:21] 2025-11-27 06:14:29,352 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 07:15:21] 2025-11-27 06:14:29,355 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6895350313/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 07:15:21] 2025-11-27 06:14:29,355 | INFO     | extracted standard info from prmon json
[2025-11-27 07:15:21] 2025-11-27 06:14:29,355 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 07:15:21] 2025-11-27 06:14:29,356 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 07:15:21] 2025-11-27 06:14:29,386 | INFO     | fitting pss+swap vs Time
[2025-11-27 07:15:21] 2025-11-27 06:14:29,392 | INFO     | sum of square deviations: 818467908426.5071
[2025-11-27 07:15:21] 2025-11-27 06:14:29,470 | INFO     | sum of deviations: 2649633690976.2783
[2025-11-27 07:15:21] 2025-11-27 06:14:29,471 | INFO     | mean x: 1764181814.596961
[2025-11-27 07:15:21] 2025-11-27 06:14:29,474 | INFO     | mean y: 2839440.1620839364
[2025-11-27 07:15:21] 2025-11-27 06:14:29,474 | INFO     | intersect: -5708362581.124627
[2025-11-27 07:15:21] 2025-11-27 06:14:29,476 | INFO     | chi2: 22.261671496343226
[2025-11-27 07:15:21] 2025-11-27 06:14:29,478 | INFO     | sum of square deviations: 809616939722.9685
[2025-11-27 07:15:21] 2025-11-27 06:14:29,545 | INFO     | sum of deviations: 3106862900359.4966
[2025-11-27 07:15:21] 2025-11-27 06:14:29,545 | INFO     | mean x: 1764181662.100944
[2025-11-27 07:15:21] 2025-11-27 06:14:29,546 | INFO     | mean y: 2847316.5432098764
[2025-11-27 07:15:21] 2025-11-27 06:14:29,546 | INFO     | intersect: -6767108061.8008585
[2025-11-27 07:15:21] 2025-11-27 06:14:29,547 | INFO     | chi2: 18.999463359647116
[2025-11-27 07:15:21] 2025-11-27 06:14:29,548 | INFO     | current chi2=18.999463359647116 (change=14.65392271749213 %)
[2025-11-27 07:15:21] 2025-11-27 06:14:29,550 | INFO     | right removable region: 1376
[2025-11-27 07:15:21] 2025-11-27 06:14:29,552 | INFO     | sum of square deviations: 809616014962.969
[2025-11-27 07:15:21] 2025-11-27 06:14:29,611 | INFO     | sum of deviations: 2078926934097.0708
[2025-11-27 07:15:21] 2025-11-27 06:14:29,611 | INFO     | mean x: 1764181967.100944
[2025-11-27 07:15:21] 2025-11-27 06:14:29,611 | INFO     | mean y: 2849271.5606390703
[2025-11-27 07:15:21] 2025-11-27 06:14:29,611 | INFO     | intersect: -4527206137.758626
[2025-11-27 07:15:21] 2025-11-27 06:14:29,613 | INFO     | chi2: 17.765620588358285
[2025-11-27 07:15:21] 2025-11-27 06:14:29,613 | INFO     | current chi2=17.765620588358285 (change=20.196376128915013 %)
[2025-11-27 07:15:21] 2025-11-27 06:14:29,613 | INFO     | left removable region: 10
[2025-11-27 07:15:21] 2025-11-27 06:14:29,615 | INFO     | sum of square deviations: 790368079555.029
[2025-11-27 07:15:21] 2025-11-27 06:14:29,679 | INFO     | sum of deviations: 2189913935235.4216
[2025-11-27 07:15:21] 2025-11-27 06:14:29,679 | INFO     | mean x: 1764181936.6098096
[2025-11-27 07:15:21] 2025-11-27 06:14:29,679 | INFO     | mean y: 2867048.893850659
[2025-11-27 07:15:21] 2025-11-27 06:14:29,680 | INFO     | intersect: -4885243576.028531
[2025-11-27 07:15:21] 2025-11-27 06:14:29,681 | INFO     | chi2: 10.819859621706255
[2025-11-27 07:15:21] 2025-11-27 06:14:29,681 | INFO     | current memory leak: 2.77 B/s (using 1366 data points, chi2=10.82)
[2025-11-27 07:15:21] 2025-11-27 06:14:29,683 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-27 07:15:21] 2025-11-27 06:14:29,684 | INFO     | ..............................
[2025-11-27 07:15:21] 2025-11-27 06:14:29,684 | INFO     | . Timing measurements:
[2025-11-27 07:15:21] 2025-11-27 06:14:29,684 | INFO     | . get job = 0 s
[2025-11-27 07:15:21] 2025-11-27 06:14:29,684 | INFO     | . initial setup = 6 s
[2025-11-27 07:15:21] 2025-11-27 06:14:29,684 | INFO     | . payload setup = 155 s
[2025-11-27 07:15:21] 2025-11-27 06:14:29,684 | INFO     | . stage-in = 0 s
[2025-11-27 07:15:21] 2025-11-27 06:14:29,684 | INFO     | . payload execution = 84427 s
[2025-11-27 07:15:21] 2025-11-27 06:14:29,684 | INFO     | . stage-out = 5 s
[2025-11-27 07:15:21] 2025-11-27 06:14:29,684 | INFO     | . log creation = 2 s
[2025-11-27 07:15:21] 2025-11-27 06:14:29,684 | INFO     | ..............................
[2025-11-27 07:15:21] 2025-11-27 06:14:29,821 | INFO     | 
[2025-11-27 07:15:21] 2025-11-27 06:14:29,822 | INFO     | job summary report
[2025-11-27 07:15:21] 2025-11-27 06:14:29,822 | INFO     | --------------------------------------------------
[2025-11-27 07:15:21] 2025-11-27 06:14:29,822 | INFO     | PanDA job id: 6895350313
[2025-11-27 07:15:21] 2025-11-27 06:14:29,822 | INFO     | task id: 47556149
[2025-11-27 07:15:21] 2025-11-27 06:14:29,822 | INFO     | errors: (none)
[2025-11-27 07:15:21] 2025-11-27 06:14:29,822 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 07:15:21] 2025-11-27 06:14:29,822 | INFO     | pilot state: finished 
[2025-11-27 07:15:21] 2025-11-27 06:14:29,823 | INFO     | transexitcode: 0
[2025-11-27 07:15:21] 2025-11-27 06:14:29,823 | INFO     | exeerrorcode: 0
[2025-11-27 07:15:21] 2025-11-27 06:14:29,823 | INFO     | exeerrordiag: 
[2025-11-27 07:15:21] 2025-11-27 06:14:29,823 | INFO     | exitcode: 0
[2025-11-27 07:15:21] 2025-11-27 06:14:29,823 | INFO     | exitmsg: OK
[2025-11-27 07:15:21] 2025-11-27 06:14:29,823 | INFO     | cpuconsumptiontime: 318009 s
[2025-11-27 07:15:21] 2025-11-27 06:14:29,823 | INFO     | nevents: 1000
[2025-11-27 07:15:21] 2025-11-27 06:14:29,823 | INFO     | neventsw: 0
[2025-11-27 07:15:21] 2025-11-27 06:14:29,823 | INFO     | pid: 5451
[2025-11-27 07:15:21] 2025-11-27 06:14:29,823 | INFO     | pgrp: 5451
[2025-11-27 07:15:21] 2025-11-27 06:14:29,823 | INFO     | corecount: 8
[2025-11-27 07:15:21] 2025-11-27 06:14:29,823 | INFO     | event service: False
[2025-11-27 07:15:21] 2025-11-27 06:14:29,823 | INFO     | sizes: {0: 2284037, 1: 2284292, 12: 2284292, 23: 2284320, 34: 2284348, 44: 2284376, 55: 2284532, 66: 2284560, 77: 2284588, 87: 2284644, 93: 2284934, 98: 2285242, 8
[2025-11-27 07:15:21] 2025-11-27 06:14:29,824 | INFO     | --------------------------------------------------
[2025-11-27 07:15:21] 2025-11-27 06:14:29,824 | INFO     | 
[2025-11-27 07:15:21] 2025-11-27 06:14:29,824 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-27 07:15:21] 2025-11-27 06:14:30,257 | INFO     | time since job start (84887s) is within the limit (172800.0s)
[2025-11-27 07:15:21] 2025-11-27 06:14:30,353 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 07:15:21] 2025-11-27 06:14:30,353 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 07:15:21] 2025-11-27 06:14:30,354 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 07:15:21] 2025-11-27 06:14:30,354 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 07:15:21] 2025-11-27 06:14:30,354 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 07:15:21] 2025-11-27 06:14:30,354 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 07:15:21] 2025-11-27 06:14:30,354 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 07:15:21] 2025-11-27 06:14:30,354 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 07:15:21] 2025-11-27 06:14:30,354 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 07:15:21] 2025-11-27 06:14:30,355 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 07:15:21] 2025-11-27 06:14:30,355 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 07:15:21] 2025-11-27 06:14:30,355 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 07:15:21] 2025-11-27 06:14:30,355 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 07:15:21] 2025-11-27 06:14:30,355 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 07:15:21] 2025-11-27 06:14:30,355 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 07:15:21] 2025-11-27 06:14:30,355 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 07:15:21] 2025-11-27 06:14:30,355 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 07:15:21] 2025-11-27 06:14:30,355 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 07:15:21] 2025-11-27 06:14:30,356 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 07:15:21] 2025-11-27 06:14:30,356 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 07:15:21] 2025-11-27 06:14:30,356 | INFO     | job 6895350313 has completed (purged errors)
[2025-11-27 07:15:21] 2025-11-27 06:14:30,356 | INFO     | overall cleanup function is called
[2025-11-27 07:15:21] 2025-11-27 06:14:31,372 | INFO     | --- collectZombieJob: --- 10, [5451]
[2025-11-27 07:15:21] 2025-11-27 06:14:31,372 | INFO     | zombie collector waiting for pid 5451
[2025-11-27 07:15:21] 2025-11-27 06:14:31,372 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 07:15:21] 2025-11-27 06:14:31,372 | INFO     | collected zombie processes
[2025-11-27 07:15:21] 2025-11-27 06:14:31,372 | INFO     | will attempt to kill all subprocesses of pid=5451
[2025-11-27 07:15:21] 2025-11-27 06:14:31,495 | INFO     | process IDs to be killed: [5451] (in reverse order)
[2025-11-27 07:15:21] 2025-11-27 06:14:32,254 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 07:15:21] 2025-11-27 06:14:32,255 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 07:15:21] 2025-11-27 06:14:32,258 | INFO     | did not find any defunct processes belonging to 5451
[2025-11-27 07:15:21] 2025-11-27 06:14:32,260 | INFO     | did not find any defunct processes belonging to 5451
[2025-11-27 07:15:21] 2025-11-27 06:14:32,273 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 07:15:21] 2025-11-27 06:14:32,273 | INFO     | ready for new job
[2025-11-27 07:15:21] 2025-11-27 06:14:32,273 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 07:15:21] 2025-11-27 06:14:32,279 | INFO     | ***************************************
[2025-11-27 07:15:21] 2025-11-27 06:14:32,279 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 07:15:21] 2025-11-27 06:14:32,279 | INFO     | ***************************************
[2025-11-27 07:15:21] 2025-11-27 06:14:32,279 | INFO     | 
[2025-11-27 07:15:21] 2025-11-27 06:14:32,280 | INFO     | pilot is running in a VM
[2025-11-27 07:15:21] 2025-11-27 06:14:32,280 | INFO     | architecture information:
[2025-11-27 07:15:21] 2025-11-27 06:14:32,288 | INFO     | executing command: cat /etc/os-release
[2025-11-27 07:15:21] 2025-11-27 06:14:32,443 | INFO     | cat /etc/os-release:
[2025-11-27 07:15:21] NAME="CentOS Linux"
[2025-11-27 07:15:21] VERSION="7 (Core)"
[2025-11-27 07:15:21] ID="centos"
[2025-11-27 07:15:21] ID_LIKE="rhel fedora"
[2025-11-27 07:15:21] VERSION_ID="7"
[2025-11-27 07:15:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 07:15:21] ANSI_COLOR="0;31"
[2025-11-27 07:15:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 07:15:21] HOME_URL="https://www.centos.org/"
[2025-11-27 07:15:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 07:15:21] 
[2025-11-27 07:15:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 07:15:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 07:15:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 07:15:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 07:15:21] 
[2025-11-27 07:15:21] 2025-11-27 06:14:32,443 | INFO     | ***************************************
[2025-11-27 07:15:21] 2025-11-27 06:14:32,947 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-27 07:15:21] 2025-11-27 06:14:33,201 | INFO     | sufficient remaining disk space (495481520128 B)
[2025-11-27 07:15:21] 2025-11-27 06:14:33,202 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 07:15:21] 2025-11-27 06:14:33,202 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 07:15:21] 2025-11-27 06:14:33,202 | INFO     | update_server=False
[2025-11-27 07:15:21] 2025-11-27 06:14:33,202 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 07:15:21] 2025-11-27 06:14:33,204 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 07:15:21] 2025-11-27 06:14:33,403 | INFO     | all data control threads have been joined
[2025-11-27 07:15:21] 2025-11-27 06:14:33,445 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:15:21] 2025-11-27 06:14:33,445 | INFO     | aborting loop
[2025-11-27 07:15:21] 2025-11-27 06:14:33,467 | INFO     | all job control threads have been joined
[2025-11-27 07:15:21] 2025-11-27 06:14:33,650 | INFO     | all payload control threads have been joined
[2025-11-27 07:15:21] 2025-11-27 06:14:34,208 | INFO     | [job] retrieve thread has finished
[2025-11-27 07:15:21] 2025-11-27 06:14:34,409 | INFO     | [data] control thread has finished
[2025-11-27 07:15:21] 2025-11-27 06:14:34,451 | INFO     | [job] job monitor thread has finished
[2025-11-27 07:15:21] 2025-11-27 06:14:34,472 | INFO     | [job] control thread has finished
[2025-11-27 07:15:21] 2025-11-27 06:14:34,513 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 07:15:21] 2025-11-27 06:14:34,628 | INFO     | [payload] failed_post thread has finished
[2025-11-27 07:15:21] 2025-11-27 06:14:34,656 | INFO     | [payload] control thread has finished
[2025-11-27 07:15:21] 2025-11-27 06:14:34,734 | INFO     | [data] copytool_in thread has finished
[2025-11-27 07:15:21] 2025-11-27 06:14:34,841 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:15:21] 2025-11-27 06:14:35,211 | INFO     | [data] copytool_out thread has finished
[2025-11-27 07:15:21] 2025-11-27 06:14:35,212 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 07:15:21] 2025-11-27 06:14:35,215 | INFO     | [job] validate thread has finished
[2025-11-27 07:15:21] 2025-11-27 06:14:35,219 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 07:15:21] 2025-11-27 06:14:35,348 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 07:15:21] 2025-11-27 06:14:35,658 | INFO     | [payload] validate_post thread has finished
[2025-11-27 07:15:21] 2025-11-27 06:14:35,847 | INFO     | [job] queue monitor thread has finished
[2025-11-27 07:15:21] 2025-11-27 06:14:35,997 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 07:15:21] 2025-11-27 06:14:40,006 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 07:15:21] 2025-11-27 06:15:03,519 | INFO     | PID=31317 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 07:15:21] 2025-11-27 06:15:03,519 | INFO     | .. there are 9 such processes running
[2025-11-27 07:15:21] 2025-11-27 06:15:03,520 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 07:15:21] 2025-11-27 06:15:03,520 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 07:15:21] 2025-11-27 06:15:03,520 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 07:15:21] 2025-11-27 06:15:10,835 | INFO     | [monitor] cgroup control has ended
[2025-11-27 07:15:21] 2025-11-27 06:15:12,215 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139781463070528)>', '<ExcThread(monitor, started 139780499166976)>']
[2025-11-27 07:15:21] 2025-11-27 06:15:12,572 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 07:15:21] 2025-11-27 06:15:12,572 | INFO     | [monitor] control thread has ended
[2025-11-27 07:15:21] 2025-11-27 06:15:17,241 | INFO     | all workflow threads have been joined
[2025-11-27 07:15:21] 2025-11-27 06:15:17,241 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 07:15:21] 2025-11-27 06:15:17,241 | INFO     | traces error code: 0
[2025-11-27 07:15:21] 2025-11-27 06:15:17,242 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 07:15:21] 2025-11-27 06:15:17,535 [wrapper] ==== pilot stdout END ====
[2025-11-27 07:15:21] 2025-11-27 06:15:17,555 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 07:15:21] 2025-11-27 06:15:17,575 [wrapper] pilotpid: 31317
[2025-11-27 07:15:21] 2025-11-27 06:15:17,643 [wrapper] Pilot exit status: 0
[2025-11-27 07:15:21] 2025-11-27 06:15:18,067 [wrapper] pandaids: 6895350313
[2025-11-27 07:15:21] 2025-11-27 06:15:18,736 [wrapper] cleanup supervisor_pilot 11072 31318
[2025-11-27 07:15:21] 2025-11-27 06:15:18,743 [wrapper] Test setup, not cleaning
[2025-11-27 07:15:21] 2025-11-27 06:15:18,749 [wrapper] apfmon messages muted
[2025-11-27 07:15:21] 2025-11-27 06:15:18,752 [wrapper] ==== wrapper stdout END ====
[2025-11-27 07:15:21] 2025-11-27 06:15:18,755 [wrapper] ==== wrapper stderr END ====
[2025-11-27 07:15:21]  *** Error codes and diagnostics ***
[2025-11-27 07:15:21]     "exeErrorCode": 0,
[2025-11-27 07:15:21]     "exeErrorDiag": "",
[2025-11-27 07:15:21]     "pilotErrorCode": 0,
[2025-11-27 07:15:21]     "pilotErrorDiag": "",
[2025-11-27 07:15:21]  *** Listing of results directory ***
[2025-11-27 07:15:21] total 1326928
[2025-11-27 07:15:21] -rw-r--r--. 1 boinc boinc    576529 Nov 22 21:41 pilot3.tar.gz
[2025-11-27 07:15:21] -rwx------. 1 boinc boinc     36292 Nov 22 22:06 runpilot2-wrapper.sh
[2025-11-27 07:15:21] -rw-r--r--. 1 boinc boinc      5112 Nov 22 22:06 queuedata.json
[2025-11-27 07:15:21] -rw-r--r--. 1 boinc boinc       100 Nov 26 07:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 07:15:21] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 07:36 run_atlas
[2025-11-27 07:15:21] -rw-r--r--. 1 boinc boinc       105 Nov 26 07:36 job.xml
[2025-11-27 07:15:21] -rw-r--r--. 1 boinc boinc      6393 Nov 26 07:36 init_data.xml
[2025-11-27 07:15:21] -rw-r--r--. 2 boinc boinc 407997341 Nov 26 07:36 EVNT.47483658._001115.pool.root.1
[2025-11-27 07:15:21] -rw-r--r--. 2 boinc boinc     15847 Nov 26 07:36 start_atlas.sh
[2025-11-27 07:15:21] drwxrwx--x. 2 boinc boinc        68 Nov 26 07:36 shared
[2025-11-27 07:15:21] -rw-r--r--. 2 boinc boinc    590100 Nov 26 07:36 input.tar.gz
[2025-11-27 07:15:21] -rw-r--r--. 1 boinc boinc         0 Nov 26 07:36 boinc_lockfile
[2025-11-27 07:15:21] -rw-r--r--. 1 boinc boinc      2785 Nov 26 07:36 pandaJob.out
[2025-11-27 07:15:21] -rw-------. 1 boinc boinc    991877 Nov 26 07:39 agis_schedconf.cvmfs.json
[2025-11-27 07:15:21] drwx------. 5 boinc boinc      4096 Nov 26 07:39 pilot3
[2025-11-27 07:15:21] -rw-r--r--. 1 boinc boinc       533 Nov 27 06:44 boinc_task_state.xml
[2025-11-27 07:15:21] -rw-------. 1 boinc boinc 919400795 Nov 27 07:11 HITS.47556149._001018.pool.root.1
[2025-11-27 07:15:21] -rw-------. 1 boinc boinc      1027 Nov 27 07:12 memory_monitor_summary.json
[2025-11-27 07:15:21] -rw-------. 1 boinc boinc   1516240 Nov 27 07:12 agis_ddmendpoints.agis.ALL.json
[2025-11-27 07:15:21] -rw-------. 1 boinc boinc   2459304 Nov 27 07:12 log.47556149._001018.job.log.tgz.1
[2025-11-27 07:15:21] -rw-------. 1 boinc boinc        95 Nov 27 07:14 pilot_heartbeat.json
[2025-11-27 07:15:21] -rw-------. 1 boinc boinc      8640 Nov 27 07:14 heartbeat.json
[2025-11-27 07:15:21] -rw-r--r--. 1 boinc boinc      8192 Nov 27 07:14 boinc_mmap_file
[2025-11-27 07:15:21] -rw-r--r--. 1 boinc boinc        29 Nov 27 07:14 wrapper_checkpoint.txt
[2025-11-27 07:15:21] -rw-------. 1 boinc boinc      4884 Nov 27 07:15 pilotlog.txt
[2025-11-27 07:15:21] -rw-------. 1 boinc boinc  11277507 Nov 27 07:15 log.47556149._001018.job.log.1
[2025-11-27 07:15:21] -rw-------. 1 boinc boinc       353 Nov 27 07:15 output.list
[2025-11-27 07:15:21] -rw-r--r--. 1 boinc boinc       620 Nov 27 07:15 runtime_log
[2025-11-27 07:15:21] -rw-------. 1 boinc boinc  13752320 Nov 27 07:15 result.tar.gz
[2025-11-27 07:15:21] -rw-r--r--. 1 boinc boinc      8817 Nov 27 07:15 runtime_log.err
[2025-11-27 07:15:21] -rw-------. 1 boinc boinc       662 Nov 27 07:15 rRXKDmvz9g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmOIIKDmHHK1wm.diag
[2025-11-27 07:15:21] -rw-r--r--. 1 boinc boinc     21437 Nov 27 07:15 stderr.txt
[2025-11-27 07:15:21] HITS file was successfully produced:
[2025-11-27 07:15:21] -rw-------. 1 boinc boinc 919400795 Nov 27 07:11 shared/HITS.pool.root.1
[2025-11-27 07:15:21]  *** Contents of shared directory: ***
[2025-11-27 07:15:21] total 1310320
[2025-11-27 07:15:21] -rw-r--r--. 2 boinc boinc 407997341 Nov 26 07:36 ATLAS.root_0
[2025-11-27 07:15:21] -rw-r--r--. 2 boinc boinc     15847 Nov 26 07:36 start_atlas.sh
[2025-11-27 07:15:21] -rw-r--r--. 2 boinc boinc    590100 Nov 26 07:36 input.tar.gz
[2025-11-27 07:15:21] -rw-------. 1 boinc boinc 919400795 Nov 27 07:11 HITS.pool.root.1
[2025-11-27 07:15:21] -rw-------. 1 boinc boinc  13752320 Nov 27 07:15 result.tar.gz
07:15:22 (27500): run_atlas exited; CPU time 318577.342660
07:15:22 (27500): called boinc_finish(0)

</stderr_txt>
]]>

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