Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-25 19:15:40 (2264): vboxwrapper version 26210
2025-11-25 19:15:40 (2264): BOINC client version: 8.2.4
2025-11-25 19:15:41 (2264): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-11-25 19:15:41 (2264): Successfully copied 'init_data.xml' to the shared directory.
2025-11-25 19:15:41 (2264): Create VM. (boinc_dcc958d92c5cb529, slot#7)
2025-11-25 19:15:42 (2264): Setting Memory Size for VM. (4800MB)
2025-11-25 19:15:42 (2264): Setting CPU Count for VM. (8)
2025-11-25 19:15:42 (2264): Setting Chipset Options for VM.
2025-11-25 19:15:43 (2264): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-25 19:15:43 (2264): Setting Boot Options for VM.
2025-11-25 19:15:44 (2264): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-25 19:15:44 (2264): Enabling VM Network Access.
2025-11-25 19:15:44 (2264): Disabling USB Support for VM.
2025-11-25 19:15:44 (2264): Disabling COM Port Support for VM.
2025-11-25 19:15:45 (2264): Disabling LPT Port Support for VM.
2025-11-25 19:15:45 (2264): Disabling Audio Support for VM.
2025-11-25 19:15:45 (2264): Disabling Clipboard Support for VM.
2025-11-25 19:15:45 (2264): Disabling Drag and Drop Support for VM.
2025-11-25 19:15:46 (2264): Adding storage controller(s) to VM.
2025-11-25 19:15:46 (2264): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-25 19:15:48 (2264): Adding VirtualBox Guest Additions to VM.
2025-11-25 19:15:48 (2264): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-25 19:15:49 (2264): forwarding host port 64445 to guest port 80
2025-11-25 19:15:49 (2264): Enabling remote desktop for VM.
2025-11-25 19:15:49 (2264): Required extension pack not installed, remote desktop not enabled.
2025-11-25 19:15:49 (2264): Enabling shared directory for VM.
2025-11-25 19:15:50 (2264): Starting VM using VBoxManage interface. (boinc_dcc958d92c5cb529, slot#7)
2025-11-25 19:15:57 (2264): Successfully started VM. (PID = '5880')
2025-11-25 19:15:57 (2264): Reporting VM Process ID to BOINC.
2025-11-25 19:15:57 (2264): Guest Log: BIOS: VirtualBox 7.0.6
2025-11-25 19:15:57 (2264): Guest Log: CPUID EDX: 0x178bfbff
2025-11-25 19:15:57 (2264): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-25 19:15:57 (2264): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-25 19:15:57 (2264): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-25 19:15:57 (2264): Detected: Web Application Enabled (http://localhost:64445)
2025-11-25 19:15:57 (2264): Preference change detected
2025-11-25 19:15:57 (2264): Setting CPU throttle for VM. (100%)
2025-11-25 19:15:57 (2264): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-25 19:15:59 (2264): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-25 19:15:59 (2264): Guest Log: BIOS: Booting from Hard Disk...
2025-11-25 19:16:02 (2264): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-25 19:16:02 (2264): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-25 19:16:02 (2264): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-25 19:16:02 (2264): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-25 19:16:02 (2264): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-25 19:16:02 (2264): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-25 19:16:02 (2264): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-25 19:16:02 (2264): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-25 19:16:02 (2264): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-25 19:16:02 (2264): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-25 19:16:02 (2264): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-25 19:16:02 (2264): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-25 19:16:02 (2264): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-25 19:16:02 (2264): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-25 19:16:02 (2264): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-25 19:16:02 (2264): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-25 19:16:02 (2264): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-25 19:16:02 (2264): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-25 19:16:02 (2264): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-25 19:16:02 (2264): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-25 19:16:02 (2264): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-25 19:16:02 (2264): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-25 19:16:02 (2264): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-25 19:16:02 (2264): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-25 19:16:02 (2264): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-25 19:16:02 (2264): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-25 19:16:02 (2264): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-25 19:16:02 (2264): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-25 19:16:02 (2264): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-25 19:16:02 (2264): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-25 19:16:02 (2264): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-25 19:16:02 (2264): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-25 19:16:08 (2264): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-25 19:16:08 (2264): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-25 19:16:13 (2264): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-25 19:16:13 (2264): Guest Log: 00:00:00.000138 main     Log opened 2025-11-25T19:16:11.052375000Z
2025-11-25 19:16:13 (2264): Guest Log: 00:00:00.000254 main     OS Product: Linux
2025-11-25 19:16:13 (2264): Guest Log: 00:00:00.000326 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-25 19:16:13 (2264): Guest Log: 00:00:00.000376 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-25 19:16:13 (2264): Guest Log: 00:00:00.000427 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-25 19:16:13 (2264): Guest Log: 00:00:00.000428 main     Process ID: 1372
2025-11-25 19:16:13 (2264): Guest Log: 00:00:00.000429 main     Package type: LINUX_64BITS_GENERIC
2025-11-25 19:16:13 (2264): Guest Log: 00:00:00.003021 main     5.2.32 r132073 started. Verbose level = 0
2025-11-25 19:16:13 (2264): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-25 19:16:13 (2264): Guest Log: [INFO] Mounting shared directory
2025-11-25 19:16:13 (2264): Guest Log: [INFO] Checking for init_data.xml
2025-11-25 19:16:23 (2264): Guest Log: 00:00:10.008290 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 602 403 000ns (GuestNow=1 764 116 182 659 940 000 ns GuestLast=1 764 098 171 057 537 000 ns fSetTimeLastLoop=true )
2025-11-25 19:16:35 (2264): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-25 19:16:35 (2264): Guest Log: [INFO] Detected branch: prod
2025-11-25 19:16:38 (2264): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-25 19:16:38 (2264): Guest Log: Copying input files
2025-11-25 19:16:40 (2264): Guest Log: Copied input files into RunAtlas.
2025-11-25 19:16:40 (2264): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-25 19:16:40 (2264): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-25 19:16:40 (2264): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-25 19:16:40 (2264): Guest Log: Further information can be found at the LHC@home message board.
2025-11-25 19:17:01 (2264): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-25 19:17:02 (2264): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-25 19:17:02 (2264): Guest Log: 2.6.3.0 1657 0 32188 153303 4 1 3117639 4096000 0 65024 0 0 n/a 1 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-25 19:17:03 (2264): Guest Log: copied the webapp to /var/www
2025-11-25 19:17:03 (2264): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-25 19:17:03 (2264): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-25 19:17:07 (2264): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-25 19:17:07 (2264): Guest Log:  *** Starting ATLAS job. (PandaID=6895350193 taskID=47556137) ***
2025-11-25 20:56:02 (2264): Status Report: Elapsed Time: '6000.000000'
2025-11-25 20:56:02 (2264): Status Report: CPU Time: '37399.765625'
2025-11-25 22:36:06 (2264): Status Report: Elapsed Time: '12000.000000'
2025-11-25 22:36:06 (2264): Status Report: CPU Time: '84004.281250'
2025-11-26 00:16:11 (2264): Status Report: Elapsed Time: '18000.000000'
2025-11-26 00:16:11 (2264): Status Report: CPU Time: '130586.484375'
2025-11-26 01:56:16 (2264): Status Report: Elapsed Time: '24000.000000'
2025-11-26 01:56:16 (2264): Status Report: CPU Time: '177120.390625'
2025-11-26 03:36:21 (2264): Status Report: Elapsed Time: '30000.000000'
2025-11-26 03:36:21 (2264): Status Report: CPU Time: '223704.890625'
2025-11-26 05:16:25 (2264): Status Report: Elapsed Time: '36000.000000'
2025-11-26 05:16:25 (2264): Status Report: CPU Time: '270230.765625'
2025-11-26 06:56:30 (2264): Status Report: Elapsed Time: '42000.000000'
2025-11-26 06:56:30 (2264): Status Report: CPU Time: '316771.156250'
2025-11-26 08:36:35 (2264): Status Report: Elapsed Time: '48000.000000'
2025-11-26 08:36:35 (2264): Status Report: CPU Time: '363347.093750'
2025-11-26 10:06:30 (2264): Guest Log:  *** Job finished ***
2025-11-26 10:06:30 (2264): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-26 10:06:30 (2264): Guest Log: 2025-11-26 15:06:14,718 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-26 10:06:30 (2264): Guest Log: 2025-11-26 15:06:14,718 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-26 10:06:30 (2264): Guest Log: 2025-11-26 15:06:23,683 | INFO     | [monitor] cgroup control has ended
2025-11-26 10:06:30 (2264): Guest Log: 2025-11-26 15:06:23,982 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140274310850368)>', '<ExcThread(monitor, started 140273858356992)>']
2025-11-26 10:06:30 (2264): Guest Log: 2025-11-26 15:06:24,950 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-26 10:06:30 (2264): Guest Log: 2025-11-26 15:06:24,950 | INFO     | [monitor] control thread has ended
2025-11-26 10:06:30 (2264): Guest Log: 2025-11-26 15:06:29,014 | INFO     | all workflow threads have been joined
2025-11-26 10:06:30 (2264): Guest Log: 2025-11-26 15:06:29,014 | INFO     | end of generic workflow (traces error code: 0)
2025-11-26 10:06:30 (2264): Guest Log: 2025-11-26 15:06:29,015 | INFO     | traces error code: 0
2025-11-26 10:06:30 (2264): Guest Log: 2025-11-26 15:06:29,017 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-26 10:06:30 (2264): Guest Log: 2025-11-26 15:06:29,132 [wrapper] ==== pilot stdout END ====
2025-11-26 10:06:30 (2264): Guest Log: 2025-11-26 15:06:29,136 [wrapper] ==== wrapper stdout RESUME ====
2025-11-26 10:06:30 (2264): Guest Log: 2025-11-26 15:06:29,141 [wrapper] pilotpid: 6180
2025-11-26 10:06:30 (2264): Guest Log: 2025-11-26 15:06:29,146 [wrapper] Pilot exit status: 0
2025-11-26 10:06:30 (2264): Guest Log: 2025-11-26 15:06:29,165 [wrapper] pandaids: 6895350193
2025-11-26 10:06:30 (2264): Guest Log: 2025-11-26 15:06:29,199 [wrapper] cleanup supervisor_pilot 10181 6181
2025-11-26 10:06:30 (2264): Guest Log: 2025-11-26 15:06:29,204 [wrapper] Test setup, not cleaning
2025-11-26 10:06:30 (2264): Guest Log: 2025-11-26 15:06:29,210 [wrapper] apfmon messages muted
2025-11-26 10:06:30 (2264): Guest Log: 2025-11-26 15:06:29,216 [wrapper] ==== wrapper stdout END ====
2025-11-26 10:06:30 (2264): Guest Log: 2025-11-26 15:06:29,221 [wrapper] ==== wrapper stderr END ====
2025-11-26 10:06:30 (2264): Guest Log:  *** Error codes and diagnostics ***
2025-11-26 10:06:30 (2264): Guest Log:     "exeErrorCode": 0,
2025-11-26 10:06:30 (2264): Guest Log:     "exeErrorDiag": "",
2025-11-26 10:06:30 (2264): Guest Log:     "pilotErrorCode": 0,
2025-11-26 10:06:30 (2264): Guest Log:     "pilotErrorDiag": "",
2025-11-26 10:06:30 (2264): Guest Log:  *** Listing of results directory ***
2025-11-26 10:06:30 (2264): Guest Log: total 922852
2025-11-26 10:06:30 (2264): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 22 20:39 queuedata.json
2025-11-26 10:06:30 (2264): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 22 20:41 pilot3.tar.gz
2025-11-26 10:06:30 (2264): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 22 20:42 runpilot2-wrapper.sh
2025-11-26 10:06:30 (2264): Guest Log: -rwxr-xr-x. 1 atlas atlas     11294 Nov 26 00:16 init_data.xml
2025-11-26 10:06:30 (2264): Guest Log: -rwxr-xr-x. 1 atlas atlas    590105 Nov 26 00:16 input.tar.gz
2025-11-26 10:06:30 (2264): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 26 00:16 start_atlas.sh
2025-11-26 10:06:30 (2264): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 26 00:16 EVNT.47483658._000501.pool.root.1 -> /data/./ATLAS.root_0
2025-11-26 10:06:30 (2264): Guest Log: -rw-r--r--. 1 atlas atlas      2782 Nov 26 00:17 pandaJob.out
2025-11-26 10:06:30 (2264): Guest Log: -rw-------. 1 atlas atlas    991877 Nov 26 00:23 agis_schedconf.cvmfs.json
2025-11-26 10:06:30 (2264): Guest Log: drwx------. 5 atlas atlas      4096 Nov 26 00:23 pilot3
2025-11-26 10:06:30 (2264): Guest Log: -rw-------. 1 atlas atlas 923352275 Nov 26 15:04 HITS.47556137._004961.pool.root.1
2025-11-26 10:06:30 (2264): Guest Log: -rw-------. 1 atlas atlas      1043 Nov 26 15:05 memory_monitor_summary.json
2025-11-26 10:06:30 (2264): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 26 15:05 agis_ddmendpoints.agis.ALL.json
2025-11-26 10:06:30 (2264): Guest Log: -rw-------. 1 atlas atlas   2055064 Nov 26 15:05 log.47556137._004961.job.log.tgz.1
2025-11-26 10:06:30 (2264): Guest Log: -rw-------. 1 atlas atlas        95 Nov 26 15:05 pilot_heartbeat.json
2025-11-26 10:06:30 (2264): Guest Log: -rw-------. 1 atlas atlas      8662 Nov 26 15:05 heartbeat.json
2025-11-26 10:06:30 (2264): Guest Log: -rw-------. 1 atlas atlas      4805 Nov 26 15:06 pilotlog.txt
2025-11-26 10:06:30 (2264): Guest Log: -rw-------. 1 atlas atlas   6846476 Nov 26 15:06 log.47556137._004961.job.log.1
2025-11-26 10:06:30 (2264): Guest Log: -rw-------. 1 atlas atlas       353 Nov 26 15:06 output.list
2025-11-26 10:06:30 (2264): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 26 15:06 runtime_log
2025-11-26 10:06:30 (2264): Guest Log: -rw-------. 1 atlas atlas   8919040 Nov 26 15:06 result.tar.gz
2025-11-26 10:06:30 (2264): Guest Log: -rw-r--r--. 1 atlas atlas      8768 Nov 26 15:06 runtime_log.err
2025-11-26 10:06:30 (2264): Guest Log: -rw-------. 1 atlas atlas       670 Nov 26 15:06 RRqLDmic9g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmaOKKDmtSgUrm.diag
2025-11-26 10:06:30 (2264): Guest Log: Looking for outputfile HITS.47556137._004961.pool.root.1
2025-11-26 10:06:30 (2264): Guest Log: HITS file was successfully produced
2025-11-26 10:06:30 (2264): Guest Log: -rw-------. 1 atlas atlas 923352275 Nov 26 15:04 /home/atlas/RunAtlas/HITS.47556137._004961.pool.root.1
2025-11-26 10:06:35 (2264): Guest Log: Successfully finished the ATLAS job!
2025-11-26 10:06:35 (2264): Guest Log: Copying the results back to the shared directory!
2025-11-26 10:06:35 (2264): Guest Log:  *** Contents of shared directory: ***
2025-11-26 10:06:35 (2264): Guest Log: total 1312740
2025-11-26 10:06:35 (2264): Guest Log: -rwxrwxrwx. 1 root root 411346753 Nov 26 00:15 ATLAS.root_0
2025-11-26 10:06:35 (2264): Guest Log: -rwxrwxrwx. 1 root root 923352275 Nov 26 15:06 HITS.pool.root.1
2025-11-26 10:06:35 (2264): Guest Log: -rwxrwxrwx. 1 root root     11294 Nov 26 00:15 init_data.xml
2025-11-26 10:06:35 (2264): Guest Log: -rwxrwxrwx. 1 root root    590105 Nov 23 18:34 input.tar.gz
2025-11-26 10:06:35 (2264): Guest Log: -rwxrwxrwx. 1 root root   8919040 Nov 26 15:06 result.tar.gz
2025-11-26 10:06:35 (2264): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 23 18:34 start_atlas.sh
2025-11-26 10:06:35 (2264): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-26 10:06:36 (2264): VM Completion File Detected.
2025-11-26 10:06:36 (2264): Powering off VM.
2025-11-26 10:06:37 (2264): Successfully stopped VM.
2025-11-26 10:06:37 (2264): Deregistering VM. (boinc_dcc958d92c5cb529, slot#7)
2025-11-26 10:06:37 (2264): Removing network bandwidth throttle group from VM.
2025-11-26 10:06:37 (2264): Removing VM from VirtualBox.
2025-11-26 10:06:43 (2264): called boinc_finish(0)

</stderr_txt>
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