Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:50:52 (25271): wrapper (7.7.26015): starting
12:50:52 (25271): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 12:50:52] Arguments: --nthreads 8
[2025-11-23 12:50:52] Threads: 8
[2025-11-23 12:50:52] Checking for CVMFS
[2025-11-23 12:50:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 12:50:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 12:50:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 12:50:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 12:50:52] 2.11.2.0 4697 113667 134456 153216 0 82 15698519 18432000 1885 130560 0 80654047 99.973 4850861 32112 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 12:50:52] CVMFS is ok
[2025-11-23 12:50:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 12:50:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 12:50:52] Further information can be found at the LHC@home message board.
[2025-11-23 12:50:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 12:50:52] Checking for apptainer binary...
[2025-11-23 12:50:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 12:50:52] Running /usr/bin/apptainer --version
[2025-11-23 12:50:52] apptainer version 1.3.2-1.el7
[2025-11-23 12:50:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 12:50:53] c-206-21.aglt2.org
[2025-11-23 12:50:53] apptainer works
[2025-11-23 12:50:53] Set ATHENA_PROC_NUMBER=8
[2025-11-23 12:50:53] Set ATHENA_CORE_NUMBER=8
[2025-11-23 12:50:53] Starting ATLAS job with PandaID=6895350300
[2025-11-23 12:50:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 08:12:06]  *** The last 200 lines of the pilot log: ***
[2025-11-24 08:12:06] 2025-11-24 13:11:41,219 | INFO     | time since job start (69636s) is within the limit (172800.0s)
[2025-11-24 08:12:06] 2025-11-24 13:11:42,679 | INFO     | monitor loop #4959: job 0:6895350300 is in state 'finished'
[2025-11-24 08:12:06] 2025-11-24 13:11:42,680 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 08:12:06] 2025-11-24 13:11:42,989 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 08:12:06] 2025-11-24 13:11:42,996 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2489.0416666666665
[2025-11-24 08:12:06] 2025-11-24 13:11:43,000 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895350300/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 08:12:06] 2025-11-24 13:11:43,001 | INFO     | extracted standard info from prmon json
[2025-11-24 08:12:06] 2025-11-24 13:11:43,001 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 08:12:06] 2025-11-24 13:11:43,001 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 08:12:06] 2025-11-24 13:11:43,028 | INFO     | fitting pss+swap vs Time
[2025-11-24 08:12:06] 2025-11-24 13:11:43,029 | INFO     | sum of square deviations: 460612339964.22943
[2025-11-24 08:12:06] 2025-11-24 13:11:43,064 | INFO     | sum of deviations: 1916413627888.7412
[2025-11-24 08:12:06] 2025-11-24 13:11:43,064 | INFO     | mean x: 1763955060.57844
[2025-11-24 08:12:06] 2025-11-24 13:11:43,064 | INFO     | mean y: 2861436.014022787
[2025-11-24 08:12:06] 2025-11-24 13:11:43,065 | INFO     | intersect: -7336211410.662979
[2025-11-24 08:12:06] 2025-11-24 13:11:43,066 | INFO     | chi2: 6.325133599164387
[2025-11-24 08:12:06] 2025-11-24 13:11:43,068 | INFO     | sum of square deviations: 454583665432.5447
[2025-11-24 08:12:06] 2025-11-24 13:11:43,111 | INFO     | sum of deviations: 2219609156702.909
[2025-11-24 08:12:06] 2025-11-24 13:11:43,112 | INFO     | mean x: 1763954908.080986
[2025-11-24 08:12:06] 2025-11-24 13:11:43,112 | INFO     | mean y: 2869101.4357394367
[2025-11-24 08:12:06] 2025-11-24 13:11:43,112 | INFO     | intersect: -8610045888.06817
[2025-11-24 08:12:06] 2025-11-24 13:11:43,114 | INFO     | chi2: 4.133323070431079
[2025-11-24 08:12:06] 2025-11-24 13:11:43,114 | INFO     | current chi2=4.133323070431079 (change=34.652398947318176 %)
[2025-11-24 08:12:06] 2025-11-24 13:11:43,115 | INFO     | sum of square deviations: 448607829100.85364
[2025-11-24 08:12:06] 2025-11-24 13:11:43,138 | INFO     | sum of deviations: 2415544243362.699
[2025-11-24 08:12:06] 2025-11-24 13:11:43,138 | INFO     | mean x: 1763954755.5835543
[2025-11-24 08:12:06] 2025-11-24 13:11:43,138 | INFO     | mean y: 2874101.5428824048
[2025-11-24 08:12:06] 2025-11-24 13:11:43,138 | INFO     | intersect: -9495200784.80556
[2025-11-24 08:12:06] 2025-11-24 13:11:43,139 | INFO     | chi2: 3.194305734277843
[2025-11-24 08:12:06] 2025-11-24 13:11:43,139 | INFO     | current chi2=3.194305734277843 (change=22.718217766977077 %)
[2025-11-24 08:12:06] 2025-11-24 13:11:43,139 | INFO     | right removable region: 1130
[2025-11-24 08:12:06] 2025-11-24 13:11:43,140 | INFO     | sum of square deviations: 454583262832.5444
[2025-11-24 08:12:06] 2025-11-24 13:11:43,163 | INFO     | sum of deviations: 1624264627450.668
[2025-11-24 08:12:06] 2025-11-24 13:11:43,163 | INFO     | mean x: 1763955213.080986
[2025-11-24 08:12:06] 2025-11-24 13:11:43,163 | INFO     | mean y: 2868817.1558098593
[2025-11-24 08:12:06] 2025-11-24 13:11:43,163 | INFO     | intersect: -6299893055.68966
[2025-11-24 08:12:06] 2025-11-24 13:11:43,164 | INFO     | chi2: 4.310172542719369
[2025-11-24 08:12:06] 2025-11-24 13:11:43,164 | INFO     | current chi2=4.310172542719369 (change=31.856418917557956 %)
[2025-11-24 08:12:06] 2025-11-24 13:11:43,165 | INFO     | sum of square deviations: 448607231789.3476
[2025-11-24 08:12:06] 2025-11-24 13:11:43,193 | INFO     | sum of deviations: 1552694235790.4312
[2025-11-24 08:12:06] 2025-11-24 13:11:43,193 | INFO     | mean x: 1763955365.5809019
[2025-11-24 08:12:06] 2025-11-24 13:11:43,193 | INFO     | mean y: 2870643.186560566
[2025-11-24 08:12:06] 2025-11-24 13:11:43,193 | INFO     | intersect: -6102432914.681998
[2025-11-24 08:12:06] 2025-11-24 13:11:43,194 | INFO     | chi2: 4.260487288058581
[2025-11-24 08:12:06] 2025-11-24 13:11:43,194 | INFO     | current chi2=4.260487288058581 (change=1.15274398341001 %)
[2025-11-24 08:12:06] 2025-11-24 13:11:43,194 | INFO     | left removable region: 20
[2025-11-24 08:12:06] 2025-11-24 13:11:43,195 | INFO     | sum of square deviations: 424080204682.0396
[2025-11-24 08:12:06] 2025-11-24 13:11:43,231 | INFO     | time since job start (69638s) is within the limit (172800.0s)
[2025-11-24 08:12:06] 2025-11-24 13:11:43,232 | INFO     | sum of deviations: 1998286863101.139
[2025-11-24 08:12:06] 2025-11-24 13:11:43,233 | INFO     | mean x: 1763955335.0846846
[2025-11-24 08:12:06] 2025-11-24 13:11:43,233 | INFO     | mean y: 2886939.2963963966
[2025-11-24 08:12:06] 2025-11-24 13:11:43,233 | INFO     | intersect: -8308957693.583202
[2025-11-24 08:12:06] 2025-11-24 13:11:43,235 | INFO     | chi2: 0.9166491245775796
[2025-11-24 08:12:06] 2025-11-24 13:11:43,235 | INFO     | current memory leak: 4.71 B/s (using 1110 data points, chi2=0.92)
[2025-11-24 08:12:06] 2025-11-24 13:11:43,236 | INFO     | could have reported an average CPU frequency of 2632 MHz (41 samples)
[2025-11-24 08:12:06] 2025-11-24 13:11:43,236 | INFO     | ..............................
[2025-11-24 08:12:06] 2025-11-24 13:11:43,236 | INFO     | . Timing measurements:
[2025-11-24 08:12:06] 2025-11-24 13:11:43,237 | INFO     | . get job = 0 s
[2025-11-24 08:12:06] 2025-11-24 13:11:43,237 | INFO     | . initial setup = 2 s
[2025-11-24 08:12:06] 2025-11-24 13:11:43,237 | INFO     | . payload setup = 5 s
[2025-11-24 08:12:06] 2025-11-24 13:11:43,237 | INFO     | . stage-in = 0 s
[2025-11-24 08:12:06] 2025-11-24 13:11:43,237 | INFO     | . payload execution = 69604 s
[2025-11-24 08:12:06] 2025-11-24 13:11:43,237 | INFO     | . stage-out = 4 s
[2025-11-24 08:12:06] 2025-11-24 13:11:43,238 | INFO     | . log creation = 0 s
[2025-11-24 08:12:06] 2025-11-24 13:11:43,238 | INFO     | ..............................
[2025-11-24 08:12:06] 2025-11-24 13:11:43,348 | INFO     | 
[2025-11-24 08:12:06] 2025-11-24 13:11:43,348 | INFO     | job summary report
[2025-11-24 08:12:06] 2025-11-24 13:11:43,348 | INFO     | --------------------------------------------------
[2025-11-24 08:12:06] 2025-11-24 13:11:43,349 | INFO     | PanDA job id: 6895350300
[2025-11-24 08:12:06] 2025-11-24 13:11:43,349 | INFO     | task id: 47556137
[2025-11-24 08:12:06] 2025-11-24 13:11:43,349 | INFO     | errors: (none)
[2025-11-24 08:12:06] 2025-11-24 13:11:43,349 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 08:12:06] 2025-11-24 13:11:43,349 | INFO     | pilot state: finished 
[2025-11-24 08:12:06] 2025-11-24 13:11:43,349 | INFO     | transexitcode: 0
[2025-11-24 08:12:06] 2025-11-24 13:11:43,350 | INFO     | exeerrorcode: 0
[2025-11-24 08:12:06] 2025-11-24 13:11:43,350 | INFO     | exeerrordiag: 
[2025-11-24 08:12:06] 2025-11-24 13:11:43,350 | INFO     | exitcode: 0
[2025-11-24 08:12:06] 2025-11-24 13:11:43,350 | INFO     | exitmsg: OK
[2025-11-24 08:12:06] 2025-11-24 13:11:43,350 | INFO     | cpuconsumptiontime: 536329 s
[2025-11-24 08:12:06] 2025-11-24 13:11:43,350 | INFO     | nevents: 1000
[2025-11-24 08:12:06] 2025-11-24 13:11:43,351 | INFO     | neventsw: 0
[2025-11-24 08:12:06] 2025-11-24 13:11:43,351 | INFO     | pid: 3814
[2025-11-24 08:12:06] 2025-11-24 13:11:43,351 | INFO     | pgrp: 3814
[2025-11-24 08:12:06] 2025-11-24 13:11:43,351 | INFO     | corecount: 8
[2025-11-24 08:12:06] 2025-11-24 13:11:43,351 | INFO     | event service: False
[2025-11-24 08:12:06] 2025-11-24 13:11:43,351 | INFO     | sizes: {0: 2297877, 1: 2298733, 5: 2298995, 12: 2299051, 69610: 2355336, 69615: 2365121, 69618: 2365305, 69623: 2365647}
[2025-11-24 08:12:06] 2025-11-24 13:11:43,352 | INFO     | --------------------------------------------------
[2025-11-24 08:12:06] 2025-11-24 13:11:43,352 | INFO     | 
[2025-11-24 08:12:06] 2025-11-24 13:11:43,352 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 08:12:06] 2025-11-24 13:11:43,380 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 08:12:06] 2025-11-24 13:11:43,380 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 08:12:06] 2025-11-24 13:11:43,380 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 08:12:06] 2025-11-24 13:11:43,380 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 08:12:06] 2025-11-24 13:11:43,381 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 08:12:06] 2025-11-24 13:11:43,381 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 08:12:06] 2025-11-24 13:11:43,381 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 08:12:06] 2025-11-24 13:11:43,381 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 08:12:06] 2025-11-24 13:11:43,381 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 08:12:06] 2025-11-24 13:11:43,382 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 08:12:06] 2025-11-24 13:11:43,382 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 08:12:06] 2025-11-24 13:11:43,382 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 08:12:06] 2025-11-24 13:11:43,382 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 08:12:06] 2025-11-24 13:11:43,382 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 08:12:06] 2025-11-24 13:11:43,383 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 08:12:06] 2025-11-24 13:11:43,383 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 08:12:06] 2025-11-24 13:11:43,383 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 08:12:06] 2025-11-24 13:11:43,383 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 08:12:06] 2025-11-24 13:11:43,383 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 08:12:06] 2025-11-24 13:11:43,383 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 08:12:06] 2025-11-24 13:11:43,384 | INFO     | job 6895350300 has completed (purged errors)
[2025-11-24 08:12:06] 2025-11-24 13:11:43,384 | INFO     | overall cleanup function is called
[2025-11-24 08:12:06] 2025-11-24 13:11:44,401 | INFO     | --- collectZombieJob: --- 10, [3814]
[2025-11-24 08:12:06] 2025-11-24 13:11:44,402 | INFO     | zombie collector waiting for pid 3814
[2025-11-24 08:12:06] 2025-11-24 13:11:44,402 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 08:12:06] 2025-11-24 13:11:44,402 | INFO     | collected zombie processes
[2025-11-24 08:12:06] 2025-11-24 13:11:44,402 | INFO     | will attempt to kill all subprocesses of pid=3814
[2025-11-24 08:12:06] 2025-11-24 13:11:44,581 | INFO     | process IDs to be killed: [3814] (in reverse order)
[2025-11-24 08:12:06] 2025-11-24 13:11:44,645 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 08:12:06] 2025-11-24 13:11:44,646 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 08:12:06] 2025-11-24 13:11:44,651 | INFO     | did not find any defunct processes belonging to 3814
[2025-11-24 08:12:06] 2025-11-24 13:11:44,657 | INFO     | did not find any defunct processes belonging to 3814
[2025-11-24 08:12:06] 2025-11-24 13:11:44,662 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 08:12:06] 2025-11-24 13:11:44,662 | INFO     | ready for new job
[2025-11-24 08:12:06] 2025-11-24 13:11:44,662 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 08:12:06] 2025-11-24 13:11:44,667 | INFO     | ***************************************
[2025-11-24 08:12:06] 2025-11-24 13:11:44,667 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 08:12:06] 2025-11-24 13:11:44,667 | INFO     | ***************************************
[2025-11-24 08:12:06] 2025-11-24 13:11:44,668 | INFO     | 
[2025-11-24 08:12:06] 2025-11-24 13:11:44,669 | INFO     | architecture information:
[2025-11-24 08:12:06] 2025-11-24 13:11:44,669 | INFO     | executing command: cat /etc/os-release
[2025-11-24 08:12:06] 2025-11-24 13:11:44,684 | INFO     | cat /etc/os-release:
[2025-11-24 08:12:06] NAME="CentOS Linux"
[2025-11-24 08:12:06] VERSION="7 (Core)"
[2025-11-24 08:12:06] ID="centos"
[2025-11-24 08:12:06] ID_LIKE="rhel fedora"
[2025-11-24 08:12:06] VERSION_ID="7"
[2025-11-24 08:12:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 08:12:06] ANSI_COLOR="0;31"
[2025-11-24 08:12:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 08:12:06] HOME_URL="https://www.centos.org/"
[2025-11-24 08:12:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 08:12:06] 
[2025-11-24 08:12:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 08:12:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 08:12:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 08:12:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 08:12:06] 
[2025-11-24 08:12:06] 2025-11-24 13:11:44,684 | INFO     | ***************************************
[2025-11-24 08:12:06] 2025-11-24 13:11:45,187 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 08:12:06] 2025-11-24 13:11:45,208 | INFO     | sufficient remaining disk space (24754782208 B)
[2025-11-24 08:12:06] 2025-11-24 13:11:45,209 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 08:12:06] 2025-11-24 13:11:45,209 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 08:12:06] 2025-11-24 13:11:45,209 | INFO     | update_server=False
[2025-11-24 08:12:06] 2025-11-24 13:11:45,209 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 08:12:06] 2025-11-24 13:11:45,209 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-24 08:12:06] 2025-11-24 13:11:45,210 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 08:12:06] 2025-11-24 13:11:45,210 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 08:12:06] 2025-11-24 13:11:45,210 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 08:12:06] 2025-11-24 13:11:45,210 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 08:12:06] 2025-11-24 13:11:45,344 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 08:12:06] 2025-11-24 13:11:45,452 | INFO     | all payload control threads have been joined
[2025-11-24 08:12:06] 2025-11-24 13:11:45,720 | INFO     | all job control threads have been joined
[2025-11-24 08:12:06] 2025-11-24 13:11:45,920 | INFO     | all data control threads have been joined
[2025-11-24 08:12:06] 2025-11-24 13:11:46,187 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 08:12:06] 2025-11-24 13:11:46,188 | INFO     | aborting loop
[2025-11-24 08:12:06] 2025-11-24 13:11:46,215 | INFO     | [job] retrieve thread has finished
[2025-11-24 08:12:06] 2025-11-24 13:11:46,217 | INFO     | [job] queue monitor thread has finished
[2025-11-24 08:12:06] 2025-11-24 13:11:46,388 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 08:12:06] 2025-11-24 13:11:46,458 | INFO     | [payload] control thread has finished
[2025-11-24 08:12:06] 2025-11-24 13:11:46,544 | INFO     | [data] copytool_in thread has finished
[2025-11-24 08:12:06] 2025-11-24 13:11:46,726 | INFO     | [job] control thread has finished
[2025-11-24 08:12:06] 2025-11-24 13:11:46,927 | INFO     | [data] control thread has finished
[2025-11-24 08:12:06] 2025-11-24 13:11:47,068 | INFO     | [payload] failed_post thread has finished
[2025-11-24 08:12:06] 2025-11-24 13:11:47,193 | INFO     | [job] job monitor thread has finished
[2025-11-24 08:12:06] 2025-11-24 13:11:47,287 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 08:12:06] 2025-11-24 13:11:47,306 | INFO     | [payload] validate_post thread has finished
[2025-11-24 08:12:06] 2025-11-24 13:11:47,347 | INFO     | [data] copytool_out thread has finished
[2025-11-24 08:12:06] 2025-11-24 13:11:47,502 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 08:12:06] 2025-11-24 13:11:47,505 | INFO     | [job] validate thread has finished
[2025-11-24 08:12:06] 2025-11-24 13:11:47,640 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 08:12:06] 2025-11-24 13:11:48,383 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 08:12:06] 2025-11-24 13:11:52,393 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 08:12:06] 2025-11-24 13:12:00,012 | INFO     | [monitor] cgroup control has ended
[2025-11-24 08:12:06] 2025-11-24 13:12:01,307 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140149693925184)>', '<ExcThread(monitor, started 140149262374656)>']
[2025-11-24 08:12:06] 2025-11-24 13:12:02,297 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 08:12:06] 2025-11-24 13:12:02,297 | INFO     | [monitor] control thread has ended
[2025-11-24 08:12:06] 2025-11-24 13:12:06,332 | INFO     | all workflow threads have been joined
[2025-11-24 08:12:06] 2025-11-24 13:12:06,333 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 08:12:06] 2025-11-24 13:12:06,333 | INFO     | traces error code: 0
[2025-11-24 08:12:06] 2025-11-24 13:12:06,333 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 08:12:06] 2025-11-24 13:12:06,459 [wrapper] ==== pilot stdout END ====
[2025-11-24 08:12:06] 2025-11-24 13:12:06,462 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 08:12:06] 2025-11-24 13:12:06,464 [wrapper] pilotpid: 29727
[2025-11-24 08:12:06] 2025-11-24 13:12:06,466 [wrapper] Pilot exit status: 0
[2025-11-24 08:12:06] 2025-11-24 13:12:06,479 [wrapper] pandaids: 6895350300
[2025-11-24 08:12:06] 2025-11-24 13:12:06,508 [wrapper] cleanup supervisor_pilot 17557 29728
[2025-11-24 08:12:06] 2025-11-24 13:12:06,511 [wrapper] Test setup, not cleaning
[2025-11-24 08:12:06] 2025-11-24 13:12:06,513 [wrapper] apfmon messages muted
[2025-11-24 08:12:06] 2025-11-24 13:12:06,515 [wrapper] ==== wrapper stdout END ====
[2025-11-24 08:12:06] 2025-11-24 13:12:06,517 [wrapper] ==== wrapper stderr END ====
[2025-11-24 08:12:06]  *** Error codes and diagnostics ***
[2025-11-24 08:12:06]     "exeErrorCode": 0,
[2025-11-24 08:12:06]     "exeErrorDiag": "",
[2025-11-24 08:12:06]     "pilotErrorCode": 0,
[2025-11-24 08:12:06]     "pilotErrorDiag": "",
[2025-11-24 08:12:06]  *** Listing of results directory ***
[2025-11-24 08:12:06] total 1312024
[2025-11-24 08:12:06] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 15:41 pilot3.tar.gz
[2025-11-24 08:12:06] -rwx------ 1 boincer umatlas     36292 Nov 22 16:02 runpilot2-wrapper.sh
[2025-11-24 08:12:06] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 16:02 queuedata.json
[2025-11-24 08:12:06] -rw-r--r-- 1 boincer umatlas       100 Nov 23 12:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 08:12:06] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 12:50 run_atlas
[2025-11-24 08:12:06] -rw-r--r-- 1 boincer umatlas       105 Nov 23 12:50 job.xml
[2025-11-24 08:12:06] -rw-r--r-- 2 boincer umatlas 410893963 Nov 23 12:50 EVNT.47483658._000506.pool.root.1
[2025-11-24 08:12:06] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 12:50 start_atlas.sh
[2025-11-24 08:12:06] drwxrwx--x 2 boincer umatlas      4096 Nov 23 12:50 shared
[2025-11-24 08:12:06] -rw-r--r-- 2 boincer umatlas    590103 Nov 23 12:50 input.tar.gz
[2025-11-24 08:12:06] -rw-r--r-- 1 boincer umatlas         0 Nov 23 12:50 boinc_lockfile
[2025-11-24 08:12:06] -rw-r--r-- 1 boincer umatlas      2784 Nov 23 12:50 pandaJob.out
[2025-11-24 08:12:06] -rw------- 1 boincer umatlas        57 Nov 23 12:50 setup.sh.local
[2025-11-24 08:12:06] -rw------- 1 boincer umatlas    989786 Nov 23 12:51 agis_schedconf.cvmfs.json
[2025-11-24 08:12:06] drwx------ 5 boincer umatlas      4096 Nov 23 12:51 pilot3
[2025-11-24 08:12:06] -rw-r--r-- 1 boincer umatlas       533 Nov 24 07:53 boinc_task_state.xml
[2025-11-24 08:12:06] -rw-r--r-- 1 boincer umatlas      5954 Nov 24 08:00 init_data.xml
[2025-11-24 08:12:06] -rw------- 1 boincer umatlas 904897158 Nov 24 08:10 HITS.47556137._005013.pool.root.1
[2025-11-24 08:12:06] -rw------- 1 boincer umatlas      1068 Nov 24 08:11 memory_monitor_summary.json
[2025-11-24 08:12:06] -rw------- 1 boincer umatlas   1516227 Nov 24 08:11 agis_ddmendpoints.agis.ALL.json
[2025-11-24 08:12:06] -rw------- 1 boincer umatlas   2300312 Nov 24 08:11 log.47556137._005013.job.log.tgz.1
[2025-11-24 08:12:06] -rw------- 1 boincer umatlas        95 Nov 24 08:11 pilot_heartbeat.json
[2025-11-24 08:12:06] -rw------- 1 boincer umatlas      8659 Nov 24 08:11 heartbeat.json
[2025-11-24 08:12:06] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 08:11 boinc_mmap_file
[2025-11-24 08:12:06] -rw-r--r-- 1 boincer umatlas        29 Nov 24 08:11 wrapper_checkpoint.txt
[2025-11-24 08:12:06] -rw------- 1 boincer umatlas      4552 Nov 24 08:12 pilotlog.txt
[2025-11-24 08:12:06] -rw------- 1 boincer umatlas   9602765 Nov 24 08:12 log.47556137._005013.job.log.1
[2025-11-24 08:12:06] -rw------- 1 boincer umatlas       353 Nov 24 08:12 output.list
[2025-11-24 08:12:06] -rw-r--r-- 1 boincer umatlas       620 Nov 24 08:12 runtime_log
[2025-11-24 08:12:06] -rw------- 1 boincer umatlas  11919360 Nov 24 08:12 result.tar.gz
[2025-11-24 08:12:06] -rw-r--r-- 1 boincer umatlas      9343 Nov 24 08:12 runtime_log.err
[2025-11-24 08:12:06] -rw------- 1 boincer umatlas       668 Nov 24 08:12 EFgNDmlv9g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIPKKDmoJzgRm.diag
[2025-11-24 08:12:06] -rw-r--r-- 1 boincer umatlas     21236 Nov 24 08:12 stderr.txt
[2025-11-24 08:12:06] HITS file was successfully produced:
[2025-11-24 08:12:06] -rw------- 1 boincer umatlas 904897158 Nov 24 08:10 shared/HITS.pool.root.1
[2025-11-24 08:12:06]  *** Contents of shared directory: ***
[2025-11-24 08:12:06] total 1297200
[2025-11-24 08:12:06] -rw-r--r-- 2 boincer umatlas 410893963 Nov 23 12:50 ATLAS.root_0
[2025-11-24 08:12:06] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 12:50 start_atlas.sh
[2025-11-24 08:12:06] -rw-r--r-- 2 boincer umatlas    590103 Nov 23 12:50 input.tar.gz
[2025-11-24 08:12:06] -rw------- 1 boincer umatlas 904897158 Nov 24 08:10 HITS.pool.root.1
[2025-11-24 08:12:06] -rw------- 1 boincer umatlas  11919360 Nov 24 08:12 result.tar.gz
08:12:08 (25271): run_atlas exited; CPU time 535538.417218
08:12:08 (25271): called boinc_finish(0)

</stderr_txt>
]]>

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