Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:45:19 (1512360): wrapper (7.7.26015): starting
18:45:19 (1512360): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 18:45:19] Arguments: --nthreads 3
[2025-11-26 18:45:19] Threads: 3
[2025-11-26 18:45:19] Checking for CVMFS
[2025-11-26 18:45:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 18:45:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 18:45:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 18:45:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 18:45:19] 2.9.2.0 1300652 1482 64788 153330 1 81 29238410 36864001 0 130560 0 547708 99.979 60802 778 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 18:45:19] CVMFS is ok
[2025-11-26 18:45:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 18:45:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 18:45:19] Further information can be found at the LHC@home message board.
[2025-11-26 18:45:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 18:45:19] Checking for apptainer binary...
[2025-11-26 18:45:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 18:45:19] Running /usr/bin/apptainer --version
[2025-11-26 18:45:19] apptainer version 1.4.1-1.1
[2025-11-26 18:45:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 18:45:19] thA305
[2025-11-26 18:45:19] apptainer works
[2025-11-26 18:45:19] Set ATHENA_PROC_NUMBER=3
[2025-11-26 18:45:19] Set ATHENA_CORE_NUMBER=3
[2025-11-26 18:45:19] Starting ATLAS job with PandaID=6895350100
[2025-11-26 18:45:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 03:01:05]  *** The last 200 lines of the pilot log: ***
[2025-11-27 03:01:05] 2025-11-27 02:00:29,830 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 03:01:05] 2025-11-27 02:00:29,830 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 03:01:05] 2025-11-27 02:00:29,830 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 03:01:05] 2025-11-27 02:00:29,830 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 03:01:05] 2025-11-27 02:00:29,830 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 03:01:05] 2025-11-27 02:00:29,830 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 03:01:05] 2025-11-27 02:00:29,830 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 03:01:05] 2025-11-27 02:00:29,830 | INFO     | job 6895350100 has completed (purged errors)
[2025-11-27 03:01:05] 2025-11-27 02:00:29,830 | INFO     | overall cleanup function is called
[2025-11-27 03:01:05] 2025-11-27 02:00:30,838 | INFO     | --- collectZombieJob: --- 10, [1522526]
[2025-11-27 03:01:05] 2025-11-27 02:00:30,838 | INFO     | zombie collector waiting for pid 1522526
[2025-11-27 03:01:05] 2025-11-27 02:00:30,838 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 03:01:05] 2025-11-27 02:00:30,838 | INFO     | collected zombie processes
[2025-11-27 03:01:05] 2025-11-27 02:00:30,838 | INFO     | will attempt to kill all subprocesses of pid=1522526
[2025-11-27 03:01:05] 2025-11-27 02:00:30,888 | INFO     | process IDs to be killed: [1522526] (in reverse order)
[2025-11-27 03:01:05] 2025-11-27 02:00:30,914 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 03:01:05] 2025-11-27 02:00:30,914 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 03:01:05] 2025-11-27 02:00:30,916 | INFO     | did not find any defunct processes belonging to 1522526
[2025-11-27 03:01:05] 2025-11-27 02:00:30,917 | INFO     | did not find any defunct processes belonging to 1522526
[2025-11-27 03:01:05] 2025-11-27 02:00:30,918 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 03:01:05] 2025-11-27 02:00:30,918 | INFO     | ready for new job
[2025-11-27 03:01:05] 2025-11-27 02:00:30,918 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 03:01:05] 2025-11-27 02:00:30,919 | INFO     | ***************************************
[2025-11-27 03:01:05] 2025-11-27 02:00:30,919 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 03:01:05] 2025-11-27 02:00:30,919 | INFO     | ***************************************
[2025-11-27 03:01:05] 2025-11-27 02:00:30,919 | INFO     | 
[2025-11-27 03:01:05] 2025-11-27 02:00:30,920 | INFO     | architecture information:
[2025-11-27 03:01:05] 2025-11-27 02:00:30,920 | INFO     | executing command: cat /etc/os-release
[2025-11-27 03:01:05] 2025-11-27 02:00:30,929 | INFO     | cat /etc/os-release:
[2025-11-27 03:01:05] NAME="CentOS Linux"
[2025-11-27 03:01:05] VERSION="7 (Core)"
[2025-11-27 03:01:05] ID="centos"
[2025-11-27 03:01:05] ID_LIKE="rhel fedora"
[2025-11-27 03:01:05] VERSION_ID="7"
[2025-11-27 03:01:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 03:01:05] ANSI_COLOR="0;31"
[2025-11-27 03:01:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 03:01:05] HOME_URL="https://www.centos.org/"
[2025-11-27 03:01:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 03:01:05] 
[2025-11-27 03:01:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 03:01:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 03:01:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 03:01:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 03:01:05] 
[2025-11-27 03:01:05] 2025-11-27 02:00:30,929 | INFO     | ***************************************
[2025-11-27 03:01:05] 2025-11-27 02:00:31,432 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 03:01:05] 2025-11-27 02:00:31,445 | INFO     | sufficient remaining disk space (227256827904 B)
[2025-11-27 03:01:05] 2025-11-27 02:00:31,445 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 03:01:05] 2025-11-27 02:00:31,445 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 03:01:05] 2025-11-27 02:00:31,445 | INFO     | update_server=False
[2025-11-27 03:01:05] 2025-11-27 02:00:31,446 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 03:01:05] 2025-11-27 02:00:31,446 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:01:05] 2025-11-27 02:00:31,446 | INFO     | aborting loop
[2025-11-27 03:01:05] 2025-11-27 02:00:31,446 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:01:05] 2025-11-27 02:00:31,608 | INFO     | all payload control threads have been joined
[2025-11-27 03:01:05] 2025-11-27 02:00:31,821 | INFO     | all data control threads have been joined
[2025-11-27 03:01:05] 2025-11-27 02:00:32,052 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 03:01:05] 2025-11-27 02:00:32,451 | INFO     | [job] retrieve thread has finished
[2025-11-27 03:01:05] 2025-11-27 02:00:32,451 | INFO     | [job] job monitor thread has finished
[2025-11-27 03:01:05] 2025-11-27 02:00:32,452 | INFO     | [job] queue monitor thread has finished
[2025-11-27 03:01:05] 2025-11-27 02:00:32,603 | INFO     | all job control threads have been joined
[2025-11-27 03:01:05] 2025-11-27 02:00:32,614 | INFO     | [payload] control thread has finished
[2025-11-27 03:01:05] 2025-11-27 02:00:32,827 | INFO     | [data] control thread has finished
[2025-11-27 03:01:05] 2025-11-27 02:00:32,857 | INFO     | [payload] validate_post thread has finished
[2025-11-27 03:01:05] 2025-11-27 02:00:33,053 | INFO     | [data] copytool_in thread has finished
[2025-11-27 03:01:05] 2025-11-27 02:00:33,584 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 03:01:05] 2025-11-27 02:00:33,608 | INFO     | [job] control thread has finished
[2025-11-27 03:01:05] 2025-11-27 02:00:33,650 | INFO     | [job] validate thread has finished
[2025-11-27 03:01:05] 2025-11-27 02:00:33,670 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 03:01:05] 2025-11-27 02:00:33,676 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 03:01:05] 2025-11-27 02:00:33,829 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 03:01:05] 2025-11-27 02:00:34,031 | INFO     | [payload] failed_post thread has finished
[2025-11-27 03:01:05] 2025-11-27 02:00:34,059 | INFO     | [data] copytool_out thread has finished
[2025-11-27 03:01:05] 2025-11-27 02:00:34,579 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 03:01:05] 2025-11-27 02:00:38,585 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 03:01:05] 2025-11-27 02:00:59,573 | INFO     | [monitor] cgroup control has ended
[2025-11-27 03:01:05] 2025-11-27 02:01:00,624 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139628763350848)>', '<ExcThread(monitor, started 139628422088448)>']
[2025-11-27 03:01:05] 2025-11-27 02:01:01,120 | INFO     | PID=1516081 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 03:01:05] 2025-11-27 02:01:01,121 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 03:01:05] 2025-11-27 02:01:01,121 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 03:01:05] 2025-11-27 02:01:01,121 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 03:01:05] 2025-11-27 02:01:01,121 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 03:01:05] 2025-11-27 02:01:01,121 | INFO     | [monitor] control thread has ended
[2025-11-27 03:01:05] 2025-11-27 02:01:05,646 | INFO     | all workflow threads have been joined
[2025-11-27 03:01:05] 2025-11-27 02:01:05,646 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 03:01:05] 2025-11-27 02:01:05,647 | INFO     | traces error code: 0
[2025-11-27 03:01:05] 2025-11-27 02:01:05,647 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 03:01:05] 2025-11-27 02:01:05,697 [wrapper] ==== pilot stdout END ====
[2025-11-27 03:01:05] 2025-11-27 02:01:05,699 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 03:01:05] 2025-11-27 02:01:05,702 [wrapper] pilotpid: 1516081
[2025-11-27 03:01:05] 2025-11-27 02:01:05,704 [wrapper] Pilot exit status: 0
[2025-11-27 03:01:05] 2025-11-27 02:01:05,711 [wrapper] pandaids: 6895350100
[2025-11-27 03:01:05] 2025-11-27 02:01:05,728 [wrapper] cleanup supervisor_pilot 1579503 1516082
[2025-11-27 03:01:05] 2025-11-27 02:01:05,730 [wrapper] Test setup, not cleaning
[2025-11-27 03:01:05] 2025-11-27 02:01:05,732 [wrapper] apfmon messages muted
[2025-11-27 03:01:05] 2025-11-27 02:01:05,734 [wrapper] ==== wrapper stdout END ====
[2025-11-27 03:01:05] 2025-11-27 02:01:05,737 [wrapper] ==== wrapper stderr END ====
[2025-11-27 03:01:05]  *** Error codes and diagnostics ***
[2025-11-27 03:01:05]     "exeErrorCode": 0,
[2025-11-27 03:01:05]     "exeErrorDiag": "",
[2025-11-27 03:01:05]     "pilotErrorCode": 0,
[2025-11-27 03:01:05]     "pilotErrorDiag": "",
[2025-11-27 03:01:05]  *** Listing of results directory ***
[2025-11-27 03:01:05] total 1315952
[2025-11-27 03:01:05] -rw-r--r-- 1 boinc boinc    576529 Nov 22 21:26 pilot3.tar.gz
[2025-11-27 03:01:05] -rwx------ 1 boinc boinc     36292 Nov 22 21:39 runpilot2-wrapper.sh
[2025-11-27 03:01:05] -rw-r--r-- 1 boinc boinc      5112 Nov 22 21:39 queuedata.json
[2025-11-27 03:01:05] -rw-r--r-- 1 boinc boinc       100 Nov 26 18:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 03:01:05] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 18:45 run_atlas
[2025-11-27 03:01:05] -rw-r--r-- 1 boinc boinc       105 Nov 26 18:45 job.xml
[2025-11-27 03:01:05] -rw-r--r-- 2 boinc boinc 407354112 Nov 26 18:45 EVNT.47483658._001113.pool.root.1
[2025-11-27 03:01:05] -rw-r--r-- 2 boinc boinc    590104 Nov 26 18:45 input.tar.gz
[2025-11-27 03:01:05] -rw-r--r-- 2 boinc boinc     15847 Nov 26 18:45 start_atlas.sh
[2025-11-27 03:01:05] drwxrwx--x 2 boinc boinc      4096 Nov 26 18:45 shared
[2025-11-27 03:01:05] -rw-r--r-- 1 boinc boinc         0 Nov 26 18:45 boinc_setup_complete
[2025-11-27 03:01:05] -rw-r--r-- 1 boinc boinc      6440 Nov 26 18:45 init_data.xml
[2025-11-27 03:01:05] -rw-r--r-- 1 boinc boinc         0 Nov 26 18:45 boinc_lockfile
[2025-11-27 03:01:05] -rw-r--r-- 1 boinc boinc      2784 Nov 26 18:45 pandaJob.out
[2025-11-27 03:01:05] -rw------- 1 boinc boinc    991530 Nov 26 18:45 agis_schedconf.cvmfs.json
[2025-11-27 03:01:05] drwx------ 5 boinc boinc      4096 Nov 26 18:45 pilot3
[2025-11-27 03:01:05] -rw-r--r-- 1 boinc boinc       531 Nov 27 02:56 boinc_task_state.xml
[2025-11-27 03:01:05] -rw------- 1 boinc boinc 925558771 Nov 27 03:00 HITS.47556149._000995.pool.root.1
[2025-11-27 03:01:05] -rw------- 1 boinc boinc        95 Nov 27 03:00 pilot_heartbeat.json
[2025-11-27 03:01:05] -rw------- 1 boinc boinc      1028 Nov 27 03:00 memory_monitor_summary.json
[2025-11-27 03:01:05] -rw------- 1 boinc boinc   1516240 Nov 27 03:00 agis_ddmendpoints.agis.ALL.json
[2025-11-27 03:01:05] -rw------- 1 boinc boinc   1180130 Nov 27 03:00 log.47556149._000995.job.log.tgz.1
[2025-11-27 03:01:05] -rw------- 1 boinc boinc      8563 Nov 27 03:00 heartbeat.json
[2025-11-27 03:01:05] -rw-r--r-- 1 boinc boinc      8192 Nov 27 03:00 boinc_mmap_file
[2025-11-27 03:01:05] -rw-r--r-- 1 boinc boinc        28 Nov 27 03:00 wrapper_checkpoint.txt
[2025-11-27 03:01:05] -rw------- 1 boinc boinc      4752 Nov 27 03:01 pilotlog.txt
[2025-11-27 03:01:05] -rw------- 1 boinc boinc   4177506 Nov 27 03:01 log.47556149._000995.job.log.1
[2025-11-27 03:01:05] -rw------- 1 boinc boinc       353 Nov 27 03:01 output.list
[2025-11-27 03:01:05] -rw-r--r-- 1 boinc boinc       620 Nov 27 03:01 runtime_log
[2025-11-27 03:01:05] -rw------- 1 boinc boinc   5376000 Nov 27 03:01 result.tar.gz
[2025-11-27 03:01:05] -rw-r--r-- 1 boinc boinc      8898 Nov 27 03:01 runtime_log.err
[2025-11-27 03:01:05] -rw------- 1 boinc boinc       665 Nov 27 03:01 83FNDmtZ9g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHOKKDmGKAiEn.diag
[2025-11-27 03:01:05] -rw-r--r-- 1 boinc boinc     11741 Nov 27 03:01 stderr.txt
[2025-11-27 03:01:05] HITS file was successfully produced:
[2025-11-27 03:01:05] -rw------- 1 boinc boinc 925558771 Nov 27 03:00 shared/HITS.pool.root.1
[2025-11-27 03:01:05]  *** Contents of shared directory: ***
[2025-11-27 03:01:05] total 1307532
[2025-11-27 03:01:05] -rw-r--r-- 2 boinc boinc 407354112 Nov 26 18:45 ATLAS.root_0
[2025-11-27 03:01:05] -rw-r--r-- 2 boinc boinc    590104 Nov 26 18:45 input.tar.gz
[2025-11-27 03:01:05] -rw-r--r-- 2 boinc boinc     15847 Nov 26 18:45 start_atlas.sh
[2025-11-27 03:01:05] -rw------- 1 boinc boinc 925558771 Nov 27 03:00 HITS.pool.root.1
[2025-11-27 03:01:05] -rw------- 1 boinc boinc   5376000 Nov 27 03:01 result.tar.gz
03:01:06 (1512360): run_atlas exited; CPU time 87807.903192
03:01:06 (1512360): called boinc_finish(0)

</stderr_txt>
]]>

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