Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
23:12:16 (3430686): wrapper (7.7.26015): starting
23:12:16 (3430686): wrapper: running run_atlas (--nthreads 10)
[2025-11-25 23:12:17] Arguments: --nthreads 10
[2025-11-25 23:12:17] Threads: 10
[2025-11-25 23:12:17] Checking for CVMFS
[2025-11-25 23:12:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 23:12:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 23:12:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 23:12:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 23:12:18] 2.13.3.0 7351 11016 50692 153313 1 75 3105403 4096000 8761 130560 0 34132748 99.983 694697 759 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-25 23:12:18] CVMFS is ok
[2025-11-25 23:12:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 23:12:18] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-25 23:12:18] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-25 23:12:18] Further information can be found at the LHC@home message board.
[2025-11-25 23:12:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 23:12:18] Checking for apptainer binary...
[2025-11-25 23:12:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 23:12:18] Running /usr/bin/apptainer --version
[2025-11-25 23:12:18] apptainer version 1.4.2
[2025-11-25 23:12:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 23:12:18] 3950x-linux
[2025-11-25 23:12:18] apptainer works
[2025-11-25 23:12:18] Set ATHENA_PROC_NUMBER=10
[2025-11-25 23:12:18] Set ATHENA_CORE_NUMBER=10
[2025-11-25 23:12:18] Starting ATLAS job with PandaID=6895350059
[2025-11-25 23:12:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc224/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:47:27]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:47:27] 2025-11-27 04:46:41,200 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:47:27] 2025-11-27 04:46:41,679 | INFO     | PID=3442263 has CPU usage=12.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 20:47:27] 2025-11-27 04:46:41,679 | INFO     | .. there are 12 such processes running
[2025-11-26 20:47:27] 2025-11-27 04:46:42,684 | INFO     | time since job start (77634s) is within the limit (172800.0s)
[2025-11-26 20:47:27] 2025-11-27 04:46:43,704 | INFO     | monitor loop #5058: job 0:6895350059 is in state 'finished'
[2025-11-26 20:47:27] 2025-11-27 04:46:43,704 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:47:27] 2025-11-27 04:46:44,689 | INFO     | time since job start (77636s) is within the limit (172800.0s)
[2025-11-26 20:47:27] 2025-11-27 04:46:46,209 | INFO     | monitor loop #5059: job 0:6895350059 is in state 'finished'
[2025-11-26 20:47:27] 2025-11-27 04:46:46,209 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:47:27] 2025-11-27 04:46:46,697 | INFO     | time since job start (77638s) is within the limit (172800.0s)
[2025-11-26 20:47:27] 2025-11-27 04:46:48,703 | INFO     | time since job start (77640s) is within the limit (172800.0s)
[2025-11-26 20:47:27] 2025-11-27 04:46:48,714 | INFO     | monitor loop #5060: job 0:6895350059 is in state 'finished'
[2025-11-26 20:47:27] 2025-11-27 04:46:48,714 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:47:27] 2025-11-27 04:46:50,710 | INFO     | time since job start (77642s) is within the limit (172800.0s)
[2025-11-26 20:47:27] 2025-11-27 04:46:51,222 | INFO     | monitor loop #5061: job 0:6895350059 is in state 'finished'
[2025-11-26 20:47:27] 2025-11-27 04:46:51,222 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:47:27] 2025-11-27 04:46:52,715 | INFO     | time since job start (77644s) is within the limit (172800.0s)
[2025-11-26 20:47:27] 2025-11-27 04:46:53,147 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 20:47:27] 2025-11-27 04:46:53,158 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3249.7879062500006
[2025-11-26 20:47:27] 2025-11-27 04:46:53,176 | INFO     | using path: /var/lib/multiboinc/boinc224/slots/1/PanDA_Pilot-6895350059/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:47:27] 2025-11-27 04:46:53,176 | INFO     | extracted standard info from prmon json
[2025-11-26 20:47:27] 2025-11-27 04:46:53,177 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:47:27] 2025-11-27 04:46:53,177 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:47:27] 2025-11-27 04:46:53,231 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:47:27] 2025-11-27 04:46:53,238 | INFO     | sum of square deviations: 638182188126.9814
[2025-11-26 20:47:27] 2025-11-27 04:46:53,335 | INFO     | sum of deviations: 2797998615508.1567
[2025-11-26 20:47:27] 2025-11-27 04:46:53,336 | INFO     | mean x: 1764180005.0039308
[2025-11-26 20:47:27] 2025-11-27 04:46:53,336 | INFO     | mean y: 3139638.768081761
[2025-11-26 20:47:27] 2025-11-27 04:46:53,336 | INFO     | intersect: -7731600226.027396
[2025-11-26 20:47:27] 2025-11-27 04:46:53,337 | INFO     | chi2: 14.02802789727134
[2025-11-26 20:47:27] 2025-11-27 04:46:53,338 | INFO     | sum of square deviations: 630687444110.3492
[2025-11-26 20:47:27] 2025-11-27 04:46:53,417 | INFO     | sum of deviations: 3278744398110.9985
[2025-11-26 20:47:27] 2025-11-27 04:46:53,417 | INFO     | mean x: 1764179852.5177584
[2025-11-26 20:47:27] 2025-11-27 04:46:53,417 | INFO     | mean y: 3149418.533543804
[2025-11-26 20:47:27] 2025-11-27 04:46:53,417 | INFO     | intersect: -9168263240.334658
[2025-11-26 20:47:27] 2025-11-27 04:46:53,418 | INFO     | chi2: 10.628754818722058
[2025-11-26 20:47:27] 2025-11-27 04:46:53,418 | INFO     | current chi2=10.628754818722058 (change=24.232009684058948 %)
[2025-11-26 20:47:27] 2025-11-27 04:46:53,418 | INFO     | right removable region: 1266
[2025-11-26 20:47:27] 2025-11-27 04:46:53,427 | INFO     | sum of square deviations: 630684725340.3494
[2025-11-26 20:47:27] 2025-11-27 04:46:53,524 | INFO     | sum of deviations: 2304828636616.262
[2025-11-26 20:47:27] 2025-11-27 04:46:53,524 | INFO     | mean x: 1764180157.5177584
[2025-11-26 20:47:27] 2025-11-27 04:46:53,524 | INFO     | mean y: 3149668.27703236
[2025-11-26 20:47:27] 2025-11-27 04:46:53,534 | INFO     | intersect: -6444022403.319956
[2025-11-26 20:47:27] 2025-11-27 04:46:53,535 | INFO     | chi2: 10.825308882015335
[2025-11-26 20:47:27] 2025-11-27 04:46:53,536 | INFO     | current chi2=10.825308882015335 (change=22.830857186126504 %)
[2025-11-26 20:47:27] 2025-11-27 04:46:53,536 | INFO     | left removable region: 10
[2025-11-26 20:47:27] 2025-11-27 04:46:53,537 | INFO     | sum of square deviations: 614401141044.5931
[2025-11-26 20:47:27] 2025-11-27 04:46:53,633 | INFO     | sum of deviations: 2610999595177.9893
[2025-11-26 20:47:27] 2025-11-27 04:46:53,634 | INFO     | mean x: 1764180127.0437899
[2025-11-26 20:47:27] 2025-11-27 04:46:53,634 | INFO     | mean y: 3166930.036624204
[2025-11-26 20:47:27] 2025-11-27 04:46:53,634 | INFO     | intersect: -7494009246.591061
[2025-11-26 20:47:27] 2025-11-27 04:46:53,635 | INFO     | chi2: 5.81137789851034
[2025-11-26 20:47:27] 2025-11-27 04:46:53,638 | INFO     | current memory leak: 4.25 B/s (using 1256 data points, chi2=5.81)
[2025-11-26 20:47:27] 2025-11-27 04:46:53,639 | INFO     | could have reported an average CPU frequency of 3249 MHz (46 samples)
[2025-11-26 20:47:27] 2025-11-27 04:46:53,639 | INFO     | ..............................
[2025-11-26 20:47:27] 2025-11-27 04:46:53,640 | INFO     | . Timing measurements:
[2025-11-26 20:47:27] 2025-11-27 04:46:53,640 | INFO     | . get job = 0 s
[2025-11-26 20:47:27] 2025-11-27 04:46:53,640 | INFO     | . initial setup = 4 s
[2025-11-26 20:47:27] 2025-11-27 04:46:53,640 | INFO     | . payload setup = 16 s
[2025-11-26 20:47:27] 2025-11-27 04:46:53,640 | INFO     | . stage-in = 0 s
[2025-11-26 20:47:27] 2025-11-27 04:46:53,640 | INFO     | . payload execution = 77563 s
[2025-11-26 20:47:27] 2025-11-27 04:46:53,640 | INFO     | . stage-out = 7 s
[2025-11-26 20:47:27] 2025-11-27 04:46:53,640 | INFO     | . log creation = 2 s
[2025-11-26 20:47:27] 2025-11-27 04:46:53,640 | INFO     | ..............................
[2025-11-26 20:47:27] 2025-11-27 04:46:53,808 | INFO     | 
[2025-11-26 20:47:27] 2025-11-27 04:46:53,808 | INFO     | job summary report
[2025-11-26 20:47:27] 2025-11-27 04:46:53,809 | INFO     | --------------------------------------------------
[2025-11-26 20:47:27] 2025-11-27 04:46:53,809 | INFO     | PanDA job id: 6895350059
[2025-11-26 20:47:27] 2025-11-27 04:46:53,809 | INFO     | task id: 47556137
[2025-11-26 20:47:27] 2025-11-27 04:46:53,809 | INFO     | errors: (none)
[2025-11-26 20:47:27] 2025-11-27 04:46:53,809 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:47:27] 2025-11-27 04:46:53,809 | INFO     | pilot state: finished 
[2025-11-26 20:47:27] 2025-11-27 04:46:53,809 | INFO     | transexitcode: 0
[2025-11-26 20:47:27] 2025-11-27 04:46:53,809 | INFO     | exeerrorcode: 0
[2025-11-26 20:47:27] 2025-11-27 04:46:53,809 | INFO     | exeerrordiag: 
[2025-11-26 20:47:27] 2025-11-27 04:46:53,809 | INFO     | exitcode: 0
[2025-11-26 20:47:27] 2025-11-27 04:46:53,809 | INFO     | exitmsg: OK
[2025-11-26 20:47:27] 2025-11-27 04:46:53,809 | INFO     | cpuconsumptiontime: 218712 s
[2025-11-26 20:47:27] 2025-11-27 04:46:53,809 | INFO     | nevents: 1000
[2025-11-26 20:47:27] 2025-11-27 04:46:53,809 | INFO     | neventsw: 0
[2025-11-26 20:47:27] 2025-11-27 04:46:53,810 | INFO     | pid: 3449390
[2025-11-26 20:47:27] 2025-11-27 04:46:53,810 | INFO     | pgrp: 3449390
[2025-11-26 20:47:27] 2025-11-27 04:46:53,810 | INFO     | corecount: 10
[2025-11-26 20:47:27] 2025-11-27 04:46:53,810 | INFO     | event service: False
[2025-11-26 20:47:27] 2025-11-27 04:46:53,810 | INFO     | sizes: {0: 2284051, 1: 2284135, 2: 2284306, 12: 2284334, 15: 2284624, 23: 2284652, 77584: 2346934, 77592: 2356012, 77608: 2356202}
[2025-11-26 20:47:27] 2025-11-27 04:46:53,810 | INFO     | --------------------------------------------------
[2025-11-26 20:47:27] 2025-11-27 04:46:53,810 | INFO     | 
[2025-11-26 20:47:27] 2025-11-27 04:46:53,810 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc224/slots/1
[2025-11-26 20:47:27] 2025-11-27 04:46:53,873 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:47:27] 2025-11-27 04:46:53,873 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:47:27] 2025-11-27 04:46:53,873 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:47:27] 2025-11-27 04:46:53,873 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:47:27] 2025-11-27 04:46:53,873 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:47:27] 2025-11-27 04:46:53,873 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:47:27] 2025-11-27 04:46:53,873 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:47:27] 2025-11-27 04:46:53,873 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:47:27] 2025-11-27 04:46:53,874 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:47:27] 2025-11-27 04:46:53,874 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:47:27] 2025-11-27 04:46:53,874 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:47:27] 2025-11-27 04:46:53,874 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:47:27] 2025-11-27 04:46:53,874 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:47:27] 2025-11-27 04:46:53,874 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:47:27] 2025-11-27 04:46:53,874 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:47:27] 2025-11-27 04:46:53,874 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:47:27] 2025-11-27 04:46:53,874 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:47:27] 2025-11-27 04:46:53,874 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:47:27] 2025-11-27 04:46:53,874 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:47:27] 2025-11-27 04:46:53,874 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:47:27] 2025-11-27 04:46:53,874 | INFO     | job 6895350059 has completed (purged errors)
[2025-11-26 20:47:27] 2025-11-27 04:46:53,875 | INFO     | overall cleanup function is called
[2025-11-26 20:47:27] 2025-11-27 04:46:54,911 | INFO     | --- collectZombieJob: --- 10, [3449390]
[2025-11-26 20:47:27] 2025-11-27 04:46:54,911 | INFO     | zombie collector waiting for pid 3449390
[2025-11-26 20:47:27] 2025-11-27 04:46:54,912 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:47:27] 2025-11-27 04:46:54,912 | INFO     | collected zombie processes
[2025-11-26 20:47:27] 2025-11-27 04:46:54,912 | INFO     | will attempt to kill all subprocesses of pid=3449390
[2025-11-26 20:47:27] 2025-11-27 04:46:55,509 | INFO     | process IDs to be killed: [3449390] (in reverse order)
[2025-11-26 20:47:27] 2025-11-27 04:46:55,761 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:47:27] 2025-11-27 04:46:55,761 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:47:27] 2025-11-27 04:46:55,789 | INFO     | did not find any defunct processes belonging to 3449390
[2025-11-26 20:47:27] 2025-11-27 04:46:55,809 | INFO     | did not find any defunct processes belonging to 3449390
[2025-11-26 20:47:27] 2025-11-27 04:46:55,814 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:47:27] 2025-11-27 04:46:55,814 | INFO     | ready for new job
[2025-11-26 20:47:27] 2025-11-27 04:46:55,814 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:47:27] 2025-11-27 04:46:55,825 | INFO     | ***************************************
[2025-11-26 20:47:27] 2025-11-27 04:46:55,825 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:47:27] 2025-11-27 04:46:55,825 | INFO     | ***************************************
[2025-11-26 20:47:27] 2025-11-27 04:46:55,825 | INFO     | 
[2025-11-26 20:47:27] 2025-11-27 04:46:55,830 | INFO     | architecture information:
[2025-11-26 20:47:27] 2025-11-27 04:46:55,831 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:47:27] 2025-11-27 04:46:55,880 | INFO     | cat /etc/os-release:
[2025-11-26 20:47:27] NAME="CentOS Linux"
[2025-11-26 20:47:27] VERSION="7 (Core)"
[2025-11-26 20:47:27] ID="centos"
[2025-11-26 20:47:27] ID_LIKE="rhel fedora"
[2025-11-26 20:47:27] VERSION_ID="7"
[2025-11-26 20:47:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:47:27] ANSI_COLOR="0;31"
[2025-11-26 20:47:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:47:27] HOME_URL="https://www.centos.org/"
[2025-11-26 20:47:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:47:27] 
[2025-11-26 20:47:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:47:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:47:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:47:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:47:27] 
[2025-11-26 20:47:27] 2025-11-27 04:46:55,881 | INFO     | ***************************************
[2025-11-26 20:47:27] 2025-11-27 04:46:56,386 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc224/slots/1
[2025-11-26 20:47:27] 2025-11-27 04:46:56,448 | INFO     | sufficient remaining disk space (61667803136 B)
[2025-11-26 20:47:27] 2025-11-27 04:46:56,448 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:47:27] 2025-11-27 04:46:56,449 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:47:27] 2025-11-27 04:46:56,449 | INFO     | update_server=False
[2025-11-26 20:47:27] 2025-11-27 04:46:56,449 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:47:27] 2025-11-27 04:46:56,452 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:47:27] 2025-11-27 04:46:56,452 | INFO     | all data control threads have been joined
[2025-11-26 20:47:27] 2025-11-27 04:46:57,024 | INFO     | all job control threads have been joined
[2025-11-26 20:47:27] 2025-11-27 04:46:57,244 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:47:27] 2025-11-27 04:46:57,244 | INFO     | aborting loop
[2025-11-26 20:47:27] 2025-11-27 04:46:57,356 | INFO     | all payload control threads have been joined
[2025-11-26 20:47:27] 2025-11-27 04:46:57,369 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:47:27] 2025-11-27 04:46:57,457 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:47:27] 2025-11-27 04:46:57,458 | INFO     | [data] control thread has finished
[2025-11-26 20:47:27] 2025-11-27 04:46:57,562 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:47:27] 2025-11-27 04:46:57,563 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:47:27] 2025-11-27 04:46:57,737 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:47:27] 2025-11-27 04:46:57,947 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:47:27] 2025-11-27 04:46:58,029 | INFO     | [job] control thread has finished
[2025-11-26 20:47:27] 2025-11-27 04:46:58,035 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:47:27] 2025-11-27 04:46:58,229 | INFO     | [job] validate thread has finished
[2025-11-26 20:47:27] 2025-11-27 04:46:58,230 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:47:27] 2025-11-27 04:46:58,249 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:47:27] 2025-11-27 04:46:58,361 | INFO     | [payload] control thread has finished
[2025-11-26 20:47:27] 2025-11-27 04:46:58,457 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:47:27] 2025-11-27 04:46:58,567 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:47:27] 2025-11-27 04:46:58,650 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:47:27] 2025-11-27 04:46:58,834 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:47:27] 2025-11-27 04:46:59,840 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:47:27] 2025-11-27 04:47:01,955 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:47:27] 2025-11-27 04:47:03,692 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139606847084352)>', '<ExcThread(monitor, started 139606360057600)>']
[2025-11-26 20:47:27] 2025-11-27 04:47:08,717 | INFO     | all workflow threads have been joined
[2025-11-26 20:47:27] 2025-11-27 04:47:08,717 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:47:27] 2025-11-27 04:47:08,718 | INFO     | traces error code: 0
[2025-11-26 20:47:27] 2025-11-27 04:47:08,718 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:47:27] 2025-11-27 04:47:26,503 | INFO     | PID=3442263 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:47:27] 2025-11-27 04:47:26,504 | INFO     | .. there are 12 such processes running
[2025-11-26 20:47:27] 2025-11-27 04:47:26,504 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:47:27] 2025-11-27 04:47:26,504 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:47:27] 2025-11-27 04:47:26,504 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:47:27] 2025-11-27 04:47:26,504 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:47:27] 2025-11-27 04:47:26,504 | INFO     | [monitor] control thread has ended
[2025-11-26 20:47:27] 2025-11-27 04:47:26,784 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:47:27] 2025-11-27 04:47:26,802 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:47:27] 2025-11-27 04:47:26,812 [wrapper] pilotpid: 3442263
[2025-11-26 20:47:27] 2025-11-27 04:47:26,830 [wrapper] Pilot exit status: 0
[2025-11-26 20:47:27] 2025-11-27 04:47:26,871 [wrapper] pandaids: 6895350059
[2025-11-26 20:47:27] 2025-11-27 04:47:27,054 [wrapper] cleanup supervisor_pilot  582992 3442264
[2025-11-26 20:47:27] 2025-11-27 04:47:27,064 [wrapper] Test setup, not cleaning
[2025-11-26 20:47:27] 2025-11-27 04:47:27,079 [wrapper] apfmon messages muted
[2025-11-26 20:47:27] 2025-11-27 04:47:27,096 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:47:27] 2025-11-27 04:47:27,106 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:47:27]  *** Error codes and diagnostics ***
[2025-11-26 20:47:27]     "exeErrorCode": 0,
[2025-11-26 20:47:27]     "exeErrorDiag": "",
[2025-11-26 20:47:27]     "pilotErrorCode": 0,
[2025-11-26 20:47:27]     "pilotErrorDiag": "",
[2025-11-26 20:47:27]  *** Listing of results directory ***
[2025-11-26 20:47:27] total 1327584
[2025-11-26 20:47:27] -rw-r--r-- 1 root root    576529 Nov 22 12:26 pilot3.tar.gz
[2025-11-26 20:47:27] -rwx------ 1 4871 1028     36292 Nov 22 12:33 runpilot2-wrapper.sh
[2025-11-26 20:47:27] -rw-r--r-- 1 root root      5112 Nov 22 12:33 queuedata.json
[2025-11-26 20:47:27] -rw-r--r-- 1 root root       100 Nov 25 23:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:47:27] -rwxr-xr-x 1 root root      7986 Nov 25 23:12 run_atlas
[2025-11-26 20:47:27] -rw-r--r-- 1 root root       105 Nov 25 23:12 job.xml
[2025-11-26 20:47:27] -rw-r--r-- 2 root root 410428877 Nov 25 23:12 EVNT.47483658._000493.pool.root.1
[2025-11-26 20:47:27] drwxrwx--x 2 root root      4096 Nov 25 23:12 shared
[2025-11-26 20:47:27] -rw-r--r-- 2 root root    590099 Nov 25 23:12 input.tar.gz
[2025-11-26 20:47:27] -rw-r--r-- 2 root root     15847 Nov 25 23:12 start_atlas.sh
[2025-11-26 20:47:27] -rw-r--r-- 1 root root         0 Nov 25 23:12 boinc_setup_complete
[2025-11-26 20:47:27] -rw-r--r-- 1 root root      9237 Nov 25 23:12 init_data.xml
[2025-11-26 20:47:27] -rw-r--r-- 1 root root         0 Nov 25 23:12 boinc_lockfile
[2025-11-26 20:47:27] -rw-r--r-- 1 root root      2785 Nov 25 23:12 pandaJob.out
[2025-11-26 20:47:27] -rw------- 1 root root    991877 Nov 25 23:12 agis_schedconf.cvmfs.json
[2025-11-26 20:47:27] drwxr-xr-x 5  320  320      4096 Nov 25 23:12 pilot3
[2025-11-26 20:47:27] -rw-r--r-- 1 root root       533 Nov 26 20:21 boinc_task_state.xml
[2025-11-26 20:47:27] -rw------- 1 root root 918656031 Nov 26 20:45 HITS.47556137._004884.pool.root.1
[2025-11-26 20:47:27] -rw------- 1 root root      1048 Nov 26 20:46 memory_monitor_summary.json
[2025-11-26 20:47:27] -rw------- 1 root root   1516240 Nov 26 20:46 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:47:27] -rw------- 1 root root   2606569 Nov 26 20:46 log.47556137._004884.job.log.tgz.1
[2025-11-26 20:47:27] -rw------- 1 root root        95 Nov 26 20:46 pilot_heartbeat.json
[2025-11-26 20:47:27] -rw------- 1 root root      7925 Nov 26 20:46 heartbeat.json
[2025-11-26 20:47:27] -rw-r--r-- 1 root root      8192 Nov 26 20:47 boinc_mmap_file
[2025-11-26 20:47:27] -rw-r--r-- 1 root root        29 Nov 26 20:47 wrapper_checkpoint.txt
[2025-11-26 20:47:27] -rw------- 1 root root       823 Nov 26 20:47 pilotlog.txt
[2025-11-26 20:47:27] -rw------- 1 root root  10614088 Nov 26 20:47 log.47556137._004884.job.log.1
[2025-11-26 20:47:27] -rw------- 1 root root       353 Nov 26 20:47 output.list
[2025-11-26 20:47:27] -rw-r--r-- 1 root root       620 Nov 26 20:47 runtime_log
[2025-11-26 20:47:27] -rw------- 1 root root  13240320 Nov 26 20:47 result.tar.gz
[2025-11-26 20:47:27] -rw------- 1 root root       661 Nov 26 20:47 wbuMDmxT9g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkNKKDmy3o1vn.diag
[2025-11-26 20:47:27] -rw-r--r-- 1 root root      9021 Nov 26 20:47 runtime_log.err
[2025-11-26 20:47:27] -rw-r--r-- 1 root root     21972 Nov 26 20:47 stderr.txt
[2025-11-26 20:47:27] HITS file was successfully produced:
[2025-11-26 20:47:27] -rw------- 1 root root 918656031 Nov 26 20:45 shared/HITS.pool.root.1
[2025-11-26 20:47:27]  *** Contents of shared directory: ***
[2025-11-26 20:47:27] total 1311476
[2025-11-26 20:47:27] -rw-r--r-- 2 root root 410428877 Nov 25 23:12 ATLAS.root_0
[2025-11-26 20:47:27] -rw-r--r-- 2 root root    590099 Nov 25 23:12 input.tar.gz
[2025-11-26 20:47:27] -rw-r--r-- 2 root root     15847 Nov 25 23:12 start_atlas.sh
[2025-11-26 20:47:27] -rw------- 1 root root 918656031 Nov 26 20:45 HITS.pool.root.1
[2025-11-26 20:47:27] -rw------- 1 root root  13240320 Nov 26 20:47 result.tar.gz
20:47:29 (3430686): run_atlas exited; CPU time 218876.531006
20:47:29 (3430686): called boinc_finish(0)

</stderr_txt>
]]>

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