Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:02:18 (1719732): wrapper (7.7.26015): starting
14:02:18 (1719732): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 14:02:18] Arguments: --nthreads 8
[2025-11-23 14:02:18] Threads: 8
[2025-11-23 14:02:18] Checking for CVMFS
[2025-11-23 14:02:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 14:02:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 14:02:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 14:02:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 14:02:21] 2.13.3.0 9438 26102 153344 153217 3 556 40434152 40960000 65203 16776704 0 352845232 99.753 211973251 48519 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 14:02:21] CVMFS is ok
[2025-11-23 14:02:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 14:02:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 14:02:21] Further information can be found at the LHC@home message board.
[2025-11-23 14:02:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 14:02:21] Checking for apptainer binary...
[2025-11-23 14:02:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 14:02:21] Running /usr/bin/apptainer --version
[2025-11-23 14:02:21] apptainer version 1.4.4-1.el9
[2025-11-23 14:02:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 14:02:22] c8-7-3.aglt2.org
[2025-11-23 14:02:22] apptainer works
[2025-11-23 14:02:22] Set ATHENA_PROC_NUMBER=8
[2025-11-23 14:02:22] Set ATHENA_CORE_NUMBER=8
[2025-11-23 14:02:22] Starting ATLAS job with PandaID=6894267621
[2025-11-23 14:02:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 00:05:02]  *** The last 200 lines of the pilot log: ***
[2025-11-24 00:05:03] 2025-11-24 05:03:58,819 | INFO     | executing command: lscpu
[2025-11-24 00:05:03] 2025-11-24 05:03:58,956 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-24 00:05:03] 2025-11-24 05:03:58,994 | INFO     | time since job start (36006s) is within the limit (172800.0s)
[2025-11-24 00:05:03] 2025-11-24 05:04:00,422 | INFO     | monitor loop #2065: job 0:6894267621 is in state 'finished'
[2025-11-24 00:05:03] 2025-11-24 05:04:00,422 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:05:03] 2025-11-24 05:04:01,001 | INFO     | time since job start (36009s) is within the limit (172800.0s)
[2025-11-24 00:05:03] 2025-11-24 05:04:02,927 | INFO     | monitor loop #2066: job 0:6894267621 is in state 'finished'
[2025-11-24 00:05:03] 2025-11-24 05:04:02,927 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:05:03] 2025-11-24 05:04:03,008 | INFO     | time since job start (36011s) is within the limit (172800.0s)
[2025-11-24 00:05:03] 2025-11-24 05:04:05,020 | INFO     | time since job start (36013s) is within the limit (172800.0s)
[2025-11-24 00:05:03] 2025-11-24 05:04:05,475 | INFO     | monitor loop #2067: job 0:6894267621 is in state 'finished'
[2025-11-24 00:05:03] 2025-11-24 05:04:05,475 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:05:03] 2025-11-24 05:04:07,987 | INFO     | monitor loop #2068: job 0:6894267621 is in state 'finished'
[2025-11-24 00:05:03] 2025-11-24 05:04:07,987 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:05:03] 2025-11-24 05:04:08,347 | INFO     | PID=1746675 has CPU usage=10.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-24 00:05:03] 2025-11-24 05:04:08,348 | INFO     | .. there are 83 such processes running
[2025-11-24 00:05:03] 2025-11-24 05:04:08,931 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 00:05:03] 2025-11-24 05:04:08,937 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.1289218749994
[2025-11-24 00:05:03] 2025-11-24 05:04:08,953 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6894267621/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 00:05:03] 2025-11-24 05:04:08,956 | INFO     | extracted standard info from prmon json
[2025-11-24 00:05:03] 2025-11-24 05:04:08,957 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 00:05:03] 2025-11-24 05:04:08,957 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 00:05:03] 2025-11-24 05:04:08,974 | INFO     | fitting pss+swap vs Time
[2025-11-24 00:05:03] 2025-11-24 05:04:08,974 | INFO     | sum of square deviations: 62717850998.483826
[2025-11-24 00:05:03] 2025-11-24 05:04:08,987 | INFO     | sum of deviations: 404777464607.0712
[2025-11-24 00:05:03] 2025-11-24 05:04:08,987 | INFO     | mean x: 1763942694.5212948
[2025-11-24 00:05:03] 2025-11-24 05:04:08,988 | INFO     | mean y: 2779711.2742759795
[2025-11-24 00:05:03] 2025-11-24 05:04:08,988 | INFO     | intersect: -11381606715.131756
[2025-11-24 00:05:03] 2025-11-24 05:04:08,988 | INFO     | chi2: 20.988865909021534
[2025-11-24 00:05:03] 2025-11-24 05:04:08,988 | INFO     | sum of square deviations: 61129060999.31286
[2025-11-24 00:05:03] 2025-11-24 05:04:08,997 | INFO     | sum of deviations: 612819022947.743
[2025-11-24 00:05:03] 2025-11-24 05:04:08,997 | INFO     | mean x: 1763942542.0343642
[2025-11-24 00:05:03] 2025-11-24 05:04:08,997 | INFO     | mean y: 2799689.262886598
[2025-11-24 00:05:03] 2025-11-24 05:04:08,997 | INFO     | intersect: -17680729674.252254
[2025-11-24 00:05:03] 2025-11-24 05:04:08,997 | INFO     | chi2: 17.05653350073708
[2025-11-24 00:05:03] 2025-11-24 05:04:08,997 | INFO     | current chi2=17.05653350073708 (change=18.735325792873077 %)
[2025-11-24 00:05:03] 2025-11-24 05:04:08,998 | INFO     | right removable region: 581
[2025-11-24 00:05:03] 2025-11-24 05:04:09,002 | INFO     | sum of square deviations: 61128516269.31282
[2025-11-24 00:05:03] 2025-11-24 05:04:09,007 | INFO     | sum of deviations: 168056569968.01636
[2025-11-24 00:05:03] 2025-11-24 05:04:09,007 | INFO     | mean x: 1763942847.0343642
[2025-11-24 00:05:03] 2025-11-24 05:04:09,007 | INFO     | mean y: 2802423.2491408936
[2025-11-24 00:05:03] 2025-11-24 05:04:09,008 | INFO     | intersect: -4846688494.969495
[2025-11-24 00:05:03] 2025-11-24 05:04:09,008 | INFO     | chi2: 16.387579243085995
[2025-11-24 00:05:03] 2025-11-24 05:04:09,008 | INFO     | current chi2=16.387579243085995 (change=21.922512087505368 %)
[2025-11-24 00:05:03] 2025-11-24 05:04:09,008 | INFO     | left removable region: 10
[2025-11-24 00:05:03] 2025-11-24 05:04:09,008 | INFO     | sum of square deviations: 57727593460.4165
[2025-11-24 00:05:03] 2025-11-24 05:04:09,026 | INFO     | sum of deviations: 207810432661.10202
[2025-11-24 00:05:03] 2025-11-24 05:04:09,026 | INFO     | mean x: 1763942816.563923
[2025-11-24 00:05:03] 2025-11-24 05:04:09,026 | INFO     | mean y: 2848495.490367776
[2025-11-24 00:05:03] 2025-11-24 05:04:09,026 | INFO     | intersect: -6347073576.888137
[2025-11-24 00:05:03] 2025-11-24 05:04:09,027 | INFO     | chi2: 7.83431294087019
[2025-11-24 00:05:03] 2025-11-24 05:04:09,027 | INFO     | current memory leak: 3.60 B/s (using 571 data points, chi2=7.83)
[2025-11-24 00:05:03] 2025-11-24 05:04:09,027 | INFO     | could have reported an average CPU frequency of 3800 MHz (23 samples)
[2025-11-24 00:05:03] 2025-11-24 05:04:09,028 | INFO     | ..............................
[2025-11-24 00:05:03] 2025-11-24 05:04:09,028 | INFO     | . Timing measurements:
[2025-11-24 00:05:03] 2025-11-24 05:04:09,028 | INFO     | . get job = 0 s
[2025-11-24 00:05:03] 2025-11-24 05:04:09,028 | INFO     | . initial setup = 7 s
[2025-11-24 00:05:03] 2025-11-24 05:04:09,028 | INFO     | . payload setup = 73 s
[2025-11-24 00:05:03] 2025-11-24 05:04:09,028 | INFO     | . stage-in = 0 s
[2025-11-24 00:05:03] 2025-11-24 05:04:09,028 | INFO     | . payload execution = 35840 s
[2025-11-24 00:05:03] 2025-11-24 05:04:09,028 | INFO     | . stage-out = 5 s
[2025-11-24 00:05:03] 2025-11-24 05:04:09,028 | INFO     | . log creation = 1 s
[2025-11-24 00:05:03] 2025-11-24 05:04:09,028 | INFO     | ..............................
[2025-11-24 00:05:03] 2025-11-24 05:04:09,351 | INFO     | time since job start (36017s) is within the limit (172800.0s)
[2025-11-24 00:05:03] 2025-11-24 05:04:09,552 | INFO     | 
[2025-11-24 00:05:03] 2025-11-24 05:04:09,552 | INFO     | job summary report
[2025-11-24 00:05:03] 2025-11-24 05:04:09,552 | INFO     | --------------------------------------------------
[2025-11-24 00:05:03] 2025-11-24 05:04:09,552 | INFO     | PanDA job id: 6894267621
[2025-11-24 00:05:03] 2025-11-24 05:04:09,552 | INFO     | task id: 47533967
[2025-11-24 00:05:03] 2025-11-24 05:04:09,552 | INFO     | errors: (none)
[2025-11-24 00:05:03] 2025-11-24 05:04:09,552 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 00:05:03] 2025-11-24 05:04:09,552 | INFO     | pilot state: finished 
[2025-11-24 00:05:03] 2025-11-24 05:04:09,552 | INFO     | transexitcode: 0
[2025-11-24 00:05:03] 2025-11-24 05:04:09,553 | INFO     | exeerrorcode: 0
[2025-11-24 00:05:03] 2025-11-24 05:04:09,553 | INFO     | exeerrordiag: 
[2025-11-24 00:05:03] 2025-11-24 05:04:09,553 | INFO     | exitcode: 0
[2025-11-24 00:05:03] 2025-11-24 05:04:09,553 | INFO     | exitmsg: OK
[2025-11-24 00:05:03] 2025-11-24 05:04:09,553 | INFO     | cpuconsumptiontime: 138120 s
[2025-11-24 00:05:03] 2025-11-24 05:04:09,553 | INFO     | nevents: 1000
[2025-11-24 00:05:03] 2025-11-24 05:04:09,553 | INFO     | neventsw: 0
[2025-11-24 00:05:03] 2025-11-24 05:04:09,553 | INFO     | pid: 1788538
[2025-11-24 00:05:03] 2025-11-24 05:04:09,553 | INFO     | pgrp: 1788538
[2025-11-24 00:05:03] 2025-11-24 05:04:09,553 | INFO     | corecount: 8
[2025-11-24 00:05:03] 2025-11-24 05:04:09,553 | INFO     | event service: False
[2025-11-24 00:05:03] 2025-11-24 05:04:09,553 | INFO     | sizes: {0: 2297973, 1: 2298658, 2: 2298857, 13: 2298857, 24: 2298913, 34: 2298941, 37: 2299359, 45: 2299387, 35918: 2340402, 35919: 2340401, 35924: 2349451, 35928:
[2025-11-24 00:05:03] 2025-11-24 05:04:09,553 | INFO     | --------------------------------------------------
[2025-11-24 00:05:03] 2025-11-24 05:04:09,553 | INFO     | 
[2025-11-24 00:05:03] 2025-11-24 05:04:09,553 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-24 00:05:03] 2025-11-24 05:04:09,886 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 00:05:03] 2025-11-24 05:04:09,887 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 00:05:03] 2025-11-24 05:04:09,887 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 00:05:03] 2025-11-24 05:04:09,887 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 00:05:03] 2025-11-24 05:04:09,887 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 00:05:03] 2025-11-24 05:04:09,887 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 00:05:03] 2025-11-24 05:04:09,887 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 00:05:03] 2025-11-24 05:04:09,887 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 00:05:03] 2025-11-24 05:04:09,887 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 00:05:03] 2025-11-24 05:04:09,887 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 00:05:03] 2025-11-24 05:04:09,887 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 00:05:03] 2025-11-24 05:04:09,887 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 00:05:03] 2025-11-24 05:04:09,887 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 00:05:03] 2025-11-24 05:04:09,887 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 00:05:03] 2025-11-24 05:04:09,887 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 00:05:03] 2025-11-24 05:04:09,887 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 00:05:03] 2025-11-24 05:04:09,887 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 00:05:03] 2025-11-24 05:04:09,887 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 00:05:03] 2025-11-24 05:04:09,887 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 00:05:03] 2025-11-24 05:04:09,887 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 00:05:03] 2025-11-24 05:04:09,887 | INFO     | job 6894267621 has completed (purged errors)
[2025-11-24 00:05:03] 2025-11-24 05:04:09,887 | INFO     | overall cleanup function is called
[2025-11-24 00:05:03] 2025-11-24 05:04:10,920 | INFO     | --- collectZombieJob: --- 10, [1788538]
[2025-11-24 00:05:03] 2025-11-24 05:04:10,920 | INFO     | zombie collector waiting for pid 1788538
[2025-11-24 00:05:03] 2025-11-24 05:04:10,920 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 00:05:03] 2025-11-24 05:04:10,920 | INFO     | collected zombie processes
[2025-11-24 00:05:03] 2025-11-24 05:04:10,920 | INFO     | will attempt to kill all subprocesses of pid=1788538
[2025-11-24 00:05:03] 2025-11-24 05:04:13,512 | INFO     | process IDs to be killed: [1788538] (in reverse order)
[2025-11-24 00:05:03] 2025-11-24 05:04:13,843 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 00:05:03] 2025-11-24 05:04:13,844 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 00:05:03] 2025-11-24 05:04:13,873 | INFO     | did not find any defunct processes belonging to 1788538
[2025-11-24 00:05:03] 2025-11-24 05:04:13,975 | INFO     | did not find any defunct processes belonging to 1788538
[2025-11-24 00:05:03] 2025-11-24 05:04:14,006 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 00:05:03] 2025-11-24 05:04:14,006 | INFO     | ready for new job
[2025-11-24 00:05:03] 2025-11-24 05:04:14,007 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 00:05:03] 2025-11-24 05:04:14,032 | INFO     | ***************************************
[2025-11-24 00:05:03] 2025-11-24 05:04:14,032 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 00:05:03] 2025-11-24 05:04:14,032 | INFO     | ***************************************
[2025-11-24 00:05:03] 2025-11-24 05:04:14,032 | INFO     | 
[2025-11-24 00:05:03] 2025-11-24 05:04:14,072 | INFO     | architecture information:
[2025-11-24 00:05:03] 2025-11-24 05:04:14,126 | INFO     | executing command: cat /etc/os-release
[2025-11-24 00:05:03] 2025-11-24 05:04:14,256 | INFO     | cat /etc/os-release:
[2025-11-24 00:05:03] NAME="CentOS Linux"
[2025-11-24 00:05:03] VERSION="7 (Core)"
[2025-11-24 00:05:03] ID="centos"
[2025-11-24 00:05:03] ID_LIKE="rhel fedora"
[2025-11-24 00:05:03] VERSION_ID="7"
[2025-11-24 00:05:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 00:05:03] ANSI_COLOR="0;31"
[2025-11-24 00:05:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 00:05:03] HOME_URL="https://www.centos.org/"
[2025-11-24 00:05:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 00:05:03] 
[2025-11-24 00:05:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 00:05:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 00:05:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 00:05:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 00:05:03] 
[2025-11-24 00:05:03] 2025-11-24 05:04:14,256 | INFO     | ***************************************
[2025-11-24 00:05:03] 2025-11-24 05:04:14,760 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-24 00:05:03] 2025-11-24 05:04:14,879 | INFO     | sufficient remaining disk space (154848460800 B)
[2025-11-24 00:05:03] 2025-11-24 05:04:14,879 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 00:05:03] 2025-11-24 05:04:14,880 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 00:05:03] 2025-11-24 05:04:14,880 | INFO     | update_server=False
[2025-11-24 00:05:03] 2025-11-24 05:04:14,880 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 00:05:03] 2025-11-24 05:04:14,880 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 00:05:03] 2025-11-24 05:04:14,880 | INFO     | aborting loop
[2025-11-24 00:05:03] 2025-11-24 05:04:14,880 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 00:05:03] 2025-11-24 05:04:14,880 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 00:05:03] 2025-11-24 05:04:15,251 | INFO     | all data control threads have been joined
[2025-11-24 00:05:03] 2025-11-24 05:04:15,886 | INFO     | [job] retrieve thread has finished
[2025-11-24 00:05:03] 2025-11-24 05:04:15,886 | INFO     | [job] job monitor thread has finished
[2025-11-24 00:05:03] 2025-11-24 05:04:15,886 | INFO     | [job] queue monitor thread has finished
[2025-11-24 00:05:03] 2025-11-24 05:04:16,059 | INFO     | [data] copytool_in thread has finished
[2025-11-24 00:05:03] 2025-11-24 05:04:16,083 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 00:05:03] 2025-11-24 05:04:16,098 | INFO     | all payload control threads have been joined
[2025-11-24 00:05:03] 2025-11-24 05:04:16,200 | INFO     | all job control threads have been joined
[2025-11-24 00:05:03] 2025-11-24 05:04:16,259 | INFO     | [data] control thread has finished
[2025-11-24 00:05:03] 2025-11-24 05:04:16,564 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 00:05:03] 2025-11-24 05:04:16,565 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 00:05:03] 2025-11-24 05:04:16,720 | INFO     | [payload] failed_post thread has finished
[2025-11-24 00:05:03] 2025-11-24 05:04:16,887 | INFO     | [data] copytool_out thread has finished
[2025-11-24 00:05:03] 2025-11-24 05:04:16,949 | INFO     | [job] validate thread has finished
[2025-11-24 00:05:03] 2025-11-24 05:04:17,084 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 00:05:03] 2025-11-24 05:04:17,104 | INFO     | [payload] control thread has finished
[2025-11-24 00:05:03] 2025-11-24 05:04:17,125 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 00:05:03] 2025-11-24 05:04:17,160 | INFO     | [payload] validate_post thread has finished
[2025-11-24 00:05:03] 2025-11-24 05:04:17,208 | INFO     | [job] control thread has finished
[2025-11-24 00:05:03] 2025-11-24 05:04:21,093 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 00:05:03] 2025-11-24 05:04:45,309 | INFO     | PID=1746675 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 00:05:03] 2025-11-24 05:04:45,309 | INFO     | .. there are 83 such processes running
[2025-11-24 00:05:03] 2025-11-24 05:04:45,310 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 00:05:03] 2025-11-24 05:04:45,310 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 00:05:03] 2025-11-24 05:04:45,310 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 00:05:03] 2025-11-24 05:04:55,617 | INFO     | [monitor] cgroup control has ended
[2025-11-24 00:05:03] 2025-11-24 05:04:55,999 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140558254806848)>', '<ExcThread(monitor, started 140557611419392)>']
[2025-11-24 00:05:03] 2025-11-24 05:04:56,380 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 00:05:03] 2025-11-24 05:04:56,380 | INFO     | [monitor] control thread has ended
[2025-11-24 00:05:03] 2025-11-24 05:05:01,026 | INFO     | all workflow threads have been joined
[2025-11-24 00:05:03] 2025-11-24 05:05:01,026 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 00:05:03] 2025-11-24 05:05:01,026 | INFO     | traces error code: 0
[2025-11-24 00:05:03] 2025-11-24 05:05:01,026 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 00:05:03] 2025-11-24 05:05:01,186 [wrapper] ==== pilot stdout END ====
[2025-11-24 00:05:03] 2025-11-24 05:05:01,188 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 00:05:03] 2025-11-24 05:05:01,190 [wrapper] pilotpid: 1746675
[2025-11-24 00:05:03] 2025-11-24 05:05:01,192 [wrapper] Pilot exit status: 0
[2025-11-24 00:05:03] 2025-11-24 05:05:01,376 [wrapper] pandaids: 6894267621
[2025-11-24 00:05:03] 2025-11-24 05:05:02,197 [wrapper] cleanup supervisor_pilot 3731105 1746676
[2025-11-24 00:05:03] 2025-11-24 05:05:02,211 [wrapper] Test setup, not cleaning
[2025-11-24 00:05:03] 2025-11-24 05:05:02,236 [wrapper] apfmon messages muted
[2025-11-24 00:05:03] 2025-11-24 05:05:02,276 [wrapper] ==== wrapper stdout END ====
[2025-11-24 00:05:03] 2025-11-24 05:05:02,308 [wrapper] ==== wrapper stderr END ====
[2025-11-24 00:05:03]  *** Error codes and diagnostics ***
[2025-11-24 00:05:03]     "exeErrorCode": 0,
[2025-11-24 00:05:03]     "exeErrorDiag": "",
[2025-11-24 00:05:03]     "pilotErrorCode": 0,
[2025-11-24 00:05:03]     "pilotErrorDiag": "",
[2025-11-24 00:05:03]  *** Listing of results directory ***
[2025-11-24 00:05:03] total 1316724
[2025-11-24 00:05:03] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 00:09 pilot3.tar.gz
[2025-11-24 00:05:03] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 00:18 queuedata.json
[2025-11-24 00:05:03] -rwx------. 1 boincer umatlas     36292 Nov 21 00:19 runpilot2-wrapper.sh
[2025-11-24 00:05:03] -rw-r--r--. 1 boincer umatlas       100 Nov 23 14:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 00:05:03] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 14:02 run_atlas
[2025-11-24 00:05:03] -rw-r--r--. 1 boincer umatlas       105 Nov 23 14:02 job.xml
[2025-11-24 00:05:03] -rw-r--r--. 2 boincer umatlas 412049527 Nov 23 14:02 EVNT.47493127._002243.pool.root.1
[2025-11-24 00:05:03] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 14:02 shared
[2025-11-24 00:05:03] -rw-r--r--. 2 boincer umatlas    590110 Nov 23 14:02 input.tar.gz
[2025-11-24 00:05:03] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 14:02 start_atlas.sh
[2025-11-24 00:05:03] -rw-r--r--. 1 boincer umatlas         0 Nov 23 14:02 boinc_lockfile
[2025-11-24 00:05:03] -rw-r--r--. 1 boincer umatlas      2783 Nov 23 14:02 pandaJob.out
[2025-11-24 00:05:03] -rw-------. 1 boincer umatlas        57 Nov 23 14:02 setup.sh.local
[2025-11-24 00:05:03] -rw-------. 1 boincer umatlas    989786 Nov 23 14:03 agis_schedconf.cvmfs.json
[2025-11-24 00:05:03] drwx------. 5 boincer umatlas      4096 Nov 23 14:03 pilot3
[2025-11-24 00:05:03] -rw-r--r--. 1 boincer umatlas       533 Nov 23 23:45 boinc_task_state.xml
[2025-11-24 00:05:03] -rw-r--r--. 1 boincer umatlas      7175 Nov 24 00:01 init_data.xml
[2025-11-24 00:05:03] -rw-------. 1 boincer umatlas 919871673 Nov 24 00:02 HITS.47533967._002141.pool.root.1
[2025-11-24 00:05:03] -rw-------. 1 boincer umatlas      1065 Nov 24 00:03 memory_monitor_summary.json
[2025-11-24 00:05:03] -rw-------. 1 boincer umatlas   1526164 Nov 24 00:03 agis_ddmendpoints.agis.ALL.json
[2025-11-24 00:05:03] -rw-------. 1 boincer umatlas   1808900 Nov 24 00:03 log.47533967._002141.job.log.tgz.1
[2025-11-24 00:05:03] -rw-------. 1 boincer umatlas      8621 Nov 24 00:04 heartbeat.json
[2025-11-24 00:05:03] -rw-------. 1 boincer umatlas        95 Nov 24 00:04 pilot_heartbeat.json
[2025-11-24 00:05:03] -rw-------. 1 boincer umatlas      4825 Nov 24 00:05 pilotlog.txt
[2025-11-24 00:05:03] -rw-r--r--. 1 boincer umatlas        29 Nov 24 00:05 wrapper_checkpoint.txt
[2025-11-24 00:05:03] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 00:05 boinc_mmap_file
[2025-11-24 00:05:03] -rw-------. 1 boincer umatlas   4430060 Nov 24 00:05 log.47533967._002141.job.log.1
[2025-11-24 00:05:03] -rw-------. 1 boincer umatlas       353 Nov 24 00:05 output.list
[2025-11-24 00:05:03] -rw-r--r--. 1 boincer umatlas       620 Nov 24 00:05 runtime_log
[2025-11-24 00:05:03] -rw-------. 1 boincer umatlas   6256640 Nov 24 00:05 result.tar.gz
[2025-11-24 00:05:03] -rw-------. 1 boincer umatlas       663 Nov 24 00:05 wCDODmNjYg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmpMHKDmRUsUzm.diag
[2025-11-24 00:05:03] -rw-r--r--. 1 boincer umatlas      9333 Nov 24 00:05 runtime_log.err
[2025-11-24 00:05:03] -rw-r--r--. 1 boincer umatlas     21941 Nov 24 00:05 stderr.txt
[2025-11-24 00:05:03] HITS file was successfully produced:
[2025-11-24 00:05:03] -rw-------. 1 boincer umatlas 919871673 Nov 24 00:02 shared/HITS.pool.root.1
[2025-11-24 00:05:03]  *** Contents of shared directory: ***
[2025-11-24 00:05:03] total 1307424
[2025-11-24 00:05:03] -rw-r--r--. 2 boincer umatlas 412049527 Nov 23 14:02 ATLAS.root_0
[2025-11-24 00:05:03] -rw-r--r--. 2 boincer umatlas    590110 Nov 23 14:02 input.tar.gz
[2025-11-24 00:05:03] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 14:02 start_atlas.sh
[2025-11-24 00:05:03] -rw-------. 1 boincer umatlas 919871673 Nov 24 00:02 HITS.pool.root.1
[2025-11-24 00:05:03] -rw-------. 1 boincer umatlas   6256640 Nov 24 00:05 result.tar.gz
00:05:04 (1719732): run_atlas exited; CPU time 138845.472947
00:05:04 (1719732): called boinc_finish(0)

</stderr_txt>
]]>

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