Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:49:38 (857687): wrapper (7.7.26015): starting
12:49:38 (857687): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 12:49:38] Arguments: --nthreads 8
[2025-11-23 12:49:38] Threads: 8
[2025-11-23 12:49:38] Checking for CVMFS
[2025-11-23 12:49:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 12:49:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 12:49:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 12:49:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 12:49:39] 2.13.2.0 2325231 26631 173232 153216 3 520 27514707 40960001 33860 16776704 0 188401038 99.734 136537988 49499 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 12:49:39] CVMFS is ok
[2025-11-23 12:49:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 12:49:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 12:49:40] Further information can be found at the LHC@home message board.
[2025-11-23 12:49:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 12:49:40] Checking for apptainer binary...
[2025-11-23 12:49:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 12:49:40] Running /usr/bin/apptainer --version
[2025-11-23 12:49:40] apptainer version 1.4.4-1.el9
[2025-11-23 12:49:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 12:49:40] c-208-37.aglt2.org
[2025-11-23 12:49:40] apptainer works
[2025-11-23 12:49:40] Set ATHENA_PROC_NUMBER=8
[2025-11-23 12:49:40] Set ATHENA_CORE_NUMBER=8
[2025-11-23 12:49:40] Starting ATLAS job with PandaID=6894266400
[2025-11-23 12:49:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 23:48:43]  *** The last 200 lines of the pilot log: ***
[2025-11-23 23:48:43] 2025-11-24 04:47:52,428 | INFO     | time since job start (39407s) is within the limit (172800.0s)
[2025-11-23 23:48:43] 2025-11-24 04:47:53,205 | INFO     | monitor loop #2329: job 0:6894266400 is in state 'finished'
[2025-11-23 23:48:43] 2025-11-24 04:47:53,206 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 23:48:43] 2025-11-24 04:47:54,462 | INFO     | time since job start (39409s) is within the limit (172800.0s)
[2025-11-23 23:48:43] 2025-11-24 04:47:55,730 | INFO     | monitor loop #2330: job 0:6894266400 is in state 'finished'
[2025-11-23 23:48:43] 2025-11-24 04:47:55,731 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 23:48:43] 2025-11-24 04:47:56,492 | INFO     | time since job start (39411s) is within the limit (172800.0s)
[2025-11-23 23:48:43] 2025-11-24 04:47:58,279 | INFO     | monitor loop #2331: job 0:6894266400 is in state 'finished'
[2025-11-23 23:48:43] 2025-11-24 04:47:58,280 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 23:48:43] 2025-11-24 04:48:00,398 | INFO     | PID=880167 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-23 23:48:43] 2025-11-24 04:48:00,399 | INFO     | .. there are 29 such processes running
[2025-11-23 23:48:43] 2025-11-24 04:48:00,785 | INFO     | monitor loop #2332: job 0:6894266400 is in state 'finished'
[2025-11-23 23:48:43] 2025-11-24 04:48:00,786 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 23:48:43] 2025-11-24 04:48:01,399 | INFO     | time since job start (39416s) is within the limit (172800.0s)
[2025-11-23 23:48:43] 2025-11-24 04:48:03,217 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-23 23:48:43] 2025-11-24 04:48:03,237 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3764.9095546875
[2025-11-23 23:48:43] 2025-11-24 04:48:03,290 | INFO     | monitor loop #2333: job 0:6894266400 is in state 'finished'
[2025-11-23 23:48:43] 2025-11-24 04:48:03,291 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 23:48:43] 2025-11-24 04:48:03,334 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6894266400/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 23:48:43] 2025-11-24 04:48:03,335 | INFO     | extracted standard info from prmon json
[2025-11-23 23:48:43] 2025-11-24 04:48:03,335 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 23:48:43] 2025-11-24 04:48:03,335 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 23:48:43] 2025-11-24 04:48:03,452 | INFO     | fitting pss+swap vs Time
[2025-11-23 23:48:43] 2025-11-24 04:48:03,452 | INFO     | sum of square deviations: 82429897117.24109
[2025-11-23 23:48:43] 2025-11-24 04:48:03,477 | INFO     | sum of deviations: 883067451537.7568
[2025-11-23 23:48:43] 2025-11-24 04:48:03,478 | INFO     | mean x: 1763940003.5738726
[2025-11-23 23:48:43] 2025-11-24 04:48:03,478 | INFO     | mean y: 2768405.699844479
[2025-11-23 23:48:43] 2025-11-24 04:48:03,478 | INFO     | intersect: -18894234479.13909
[2025-11-23 23:48:43] 2025-11-24 04:48:03,478 | INFO     | chi2: 19.318797129281734
[2025-11-23 23:48:43] 2025-11-24 04:48:03,479 | INFO     | sum of square deviations: 80522067662.25854
[2025-11-23 23:48:43] 2025-11-24 04:48:03,516 | INFO     | time since job start (39418s) is within the limit (172800.0s)
[2025-11-23 23:48:43] 2025-11-24 04:48:03,516 | INFO     | sum of deviations: 1079761252910.6202
[2025-11-23 23:48:43] 2025-11-24 04:48:03,516 | INFO     | mean x: 1763939851.086207
[2025-11-23 23:48:43] 2025-11-24 04:48:03,516 | INFO     | mean y: 2784127.4796238244
[2025-11-23 23:48:43] 2025-11-24 04:48:03,516 | INFO     | intersect: -23650780155.750217
[2025-11-23 23:48:43] 2025-11-24 04:48:03,516 | INFO     | chi2: 16.499155041845974
[2025-11-23 23:48:43] 2025-11-24 04:48:03,516 | INFO     | current chi2=16.499155041845974 (change=14.59532945331257 %)
[2025-11-23 23:48:43] 2025-11-24 04:48:03,517 | INFO     | right removable region: 637
[2025-11-23 23:48:43] 2025-11-24 04:48:03,517 | INFO     | sum of square deviations: 80521450342.25853
[2025-11-23 23:48:43] 2025-11-24 04:48:03,595 | INFO     | sum of deviations: 629132000728.9153
[2025-11-23 23:48:43] 2025-11-24 04:48:03,595 | INFO     | mean x: 1763940156.086207
[2025-11-23 23:48:43] 2025-11-24 04:48:03,595 | INFO     | mean y: 2788694.18338558
[2025-11-23 23:48:43] 2025-11-24 04:48:03,595 | INFO     | intersect: -13779268072.647863
[2025-11-23 23:48:43] 2025-11-24 04:48:03,596 | INFO     | chi2: 14.649195439476545
[2025-11-23 23:48:43] 2025-11-24 04:48:03,596 | INFO     | current chi2=14.649195439476545 (change=24.171285916799746 %)
[2025-11-23 23:48:43] 2025-11-24 04:48:03,596 | INFO     | left removable region: 10
[2025-11-23 23:48:43] 2025-11-24 04:48:03,648 | INFO     | sum of square deviations: 76427736684.59663
[2025-11-23 23:48:43] 2025-11-24 04:48:03,708 | INFO     | sum of deviations: 656855404111.6843
[2025-11-23 23:48:43] 2025-11-24 04:48:03,708 | INFO     | mean x: 1763940125.6140351
[2025-11-23 23:48:43] 2025-11-24 04:48:03,708 | INFO     | mean y: 2827185.3540669857
[2025-11-23 23:48:43] 2025-11-24 04:48:03,708 | INFO     | intersect: -15157292089.41361
[2025-11-23 23:48:43] 2025-11-24 04:48:03,709 | INFO     | chi2: 7.428422595939025
[2025-11-23 23:48:43] 2025-11-24 04:48:03,709 | INFO     | current memory leak: 8.59 B/s (using 627 data points, chi2=7.43)
[2025-11-23 23:48:43] 2025-11-24 04:48:03,709 | INFO     | could have reported an average CPU frequency of 3747 MHz (25 samples)
[2025-11-23 23:48:43] 2025-11-24 04:48:03,709 | INFO     | ..............................
[2025-11-23 23:48:43] 2025-11-24 04:48:03,709 | INFO     | . Timing measurements:
[2025-11-23 23:48:43] 2025-11-24 04:48:03,709 | INFO     | . get job = 0 s
[2025-11-23 23:48:43] 2025-11-24 04:48:03,709 | INFO     | . initial setup = 5 s
[2025-11-23 23:48:43] 2025-11-24 04:48:03,710 | INFO     | . payload setup = 50 s
[2025-11-23 23:48:43] 2025-11-24 04:48:03,710 | INFO     | . stage-in = 0 s
[2025-11-23 23:48:43] 2025-11-24 04:48:03,710 | INFO     | . payload execution = 39250 s
[2025-11-23 23:48:43] 2025-11-24 04:48:03,710 | INFO     | . stage-out = 9 s
[2025-11-23 23:48:43] 2025-11-24 04:48:03,710 | INFO     | . log creation = 2 s
[2025-11-23 23:48:43] 2025-11-24 04:48:03,710 | INFO     | ..............................
[2025-11-23 23:48:43] 2025-11-24 04:48:03,966 | INFO     | 
[2025-11-23 23:48:43] 2025-11-24 04:48:03,967 | INFO     | job summary report
[2025-11-23 23:48:43] 2025-11-24 04:48:03,967 | INFO     | --------------------------------------------------
[2025-11-23 23:48:43] 2025-11-24 04:48:03,967 | INFO     | PanDA job id: 6894266400
[2025-11-23 23:48:43] 2025-11-24 04:48:03,967 | INFO     | task id: 47533967
[2025-11-23 23:48:43] 2025-11-24 04:48:03,967 | INFO     | errors: (none)
[2025-11-23 23:48:43] 2025-11-24 04:48:03,967 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 23:48:43] 2025-11-24 04:48:03,967 | INFO     | pilot state: finished 
[2025-11-23 23:48:43] 2025-11-24 04:48:03,967 | INFO     | transexitcode: 0
[2025-11-23 23:48:43] 2025-11-24 04:48:03,967 | INFO     | exeerrorcode: 0
[2025-11-23 23:48:43] 2025-11-24 04:48:03,967 | INFO     | exeerrordiag: 
[2025-11-23 23:48:43] 2025-11-24 04:48:03,967 | INFO     | exitcode: 0
[2025-11-23 23:48:43] 2025-11-24 04:48:03,967 | INFO     | exitmsg: OK
[2025-11-23 23:48:43] 2025-11-24 04:48:03,967 | INFO     | cpuconsumptiontime: 140356 s
[2025-11-23 23:48:43] 2025-11-24 04:48:03,967 | INFO     | nevents: 1000
[2025-11-23 23:48:43] 2025-11-24 04:48:03,967 | INFO     | neventsw: 0
[2025-11-23 23:48:43] 2025-11-24 04:48:03,967 | INFO     | pid: 904241
[2025-11-23 23:48:43] 2025-11-24 04:48:03,967 | INFO     | pgrp: 904241
[2025-11-23 23:48:43] 2025-11-24 04:48:03,967 | INFO     | corecount: 8
[2025-11-23 23:48:43] 2025-11-24 04:48:03,967 | INFO     | event service: False
[2025-11-23 23:48:43] 2025-11-24 04:48:03,967 | INFO     | sizes: {0: 2298636, 1: 2298835, 12: 2298835, 23: 2298863, 31: 2299153, 33: 2299181, 39305: 2342343, 39316: 2351365, 39318: 2351421, 39351: 2351731}
[2025-11-23 23:48:43] 2025-11-24 04:48:03,967 | INFO     | --------------------------------------------------
[2025-11-23 23:48:43] 2025-11-24 04:48:03,967 | INFO     | 
[2025-11-23 23:48:43] 2025-11-24 04:48:03,967 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-23 23:48:43] 2025-11-24 04:48:04,112 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 23:48:43] 2025-11-24 04:48:04,112 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 23:48:43] 2025-11-24 04:48:04,112 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 23:48:43] 2025-11-24 04:48:04,112 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 23:48:43] 2025-11-24 04:48:04,112 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 23:48:43] 2025-11-24 04:48:04,112 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 23:48:43] 2025-11-24 04:48:04,112 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 23:48:43] 2025-11-24 04:48:04,112 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 23:48:43] 2025-11-24 04:48:04,112 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 23:48:43] 2025-11-24 04:48:04,112 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 23:48:43] 2025-11-24 04:48:04,112 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 23:48:43] 2025-11-24 04:48:04,112 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 23:48:43] 2025-11-24 04:48:04,113 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 23:48:43] 2025-11-24 04:48:04,113 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 23:48:43] 2025-11-24 04:48:04,113 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 23:48:43] 2025-11-24 04:48:04,113 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 23:48:43] 2025-11-24 04:48:04,113 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 23:48:43] 2025-11-24 04:48:04,113 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 23:48:43] 2025-11-24 04:48:04,113 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 23:48:43] 2025-11-24 04:48:04,113 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 23:48:43] 2025-11-24 04:48:04,113 | INFO     | job 6894266400 has completed (purged errors)
[2025-11-23 23:48:43] 2025-11-24 04:48:04,113 | INFO     | overall cleanup function is called
[2025-11-23 23:48:43] 2025-11-24 04:48:05,176 | INFO     | --- collectZombieJob: --- 10, [904241]
[2025-11-23 23:48:43] 2025-11-24 04:48:05,177 | INFO     | zombie collector waiting for pid 904241
[2025-11-23 23:48:43] 2025-11-24 04:48:05,177 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 23:48:43] 2025-11-24 04:48:05,177 | INFO     | collected zombie processes
[2025-11-23 23:48:43] 2025-11-24 04:48:05,177 | INFO     | will attempt to kill all subprocesses of pid=904241
[2025-11-23 23:48:43] 2025-11-24 04:48:07,223 | INFO     | process IDs to be killed: [904241] (in reverse order)
[2025-11-23 23:48:43] 2025-11-24 04:48:07,588 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 23:48:43] 2025-11-24 04:48:07,588 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 23:48:43] 2025-11-24 04:48:07,877 | INFO     | did not find any defunct processes belonging to 904241
[2025-11-23 23:48:43] 2025-11-24 04:48:07,945 | INFO     | did not find any defunct processes belonging to 904241
[2025-11-23 23:48:43] 2025-11-24 04:48:07,958 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 23:48:43] 2025-11-24 04:48:07,958 | INFO     | ready for new job
[2025-11-23 23:48:43] 2025-11-24 04:48:07,958 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 23:48:43] 2025-11-24 04:48:07,960 | INFO     | ***************************************
[2025-11-23 23:48:43] 2025-11-24 04:48:07,960 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 23:48:43] 2025-11-24 04:48:07,960 | INFO     | ***************************************
[2025-11-23 23:48:43] 2025-11-24 04:48:07,960 | INFO     | 
[2025-11-23 23:48:43] 2025-11-24 04:48:07,983 | INFO     | architecture information:
[2025-11-23 23:48:43] 2025-11-24 04:48:07,986 | INFO     | executing command: cat /etc/os-release
[2025-11-23 23:48:43] 2025-11-24 04:48:08,192 | INFO     | cat /etc/os-release:
[2025-11-23 23:48:43] NAME="CentOS Linux"
[2025-11-23 23:48:43] VERSION="7 (Core)"
[2025-11-23 23:48:43] ID="centos"
[2025-11-23 23:48:43] ID_LIKE="rhel fedora"
[2025-11-23 23:48:43] VERSION_ID="7"
[2025-11-23 23:48:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 23:48:43] ANSI_COLOR="0;31"
[2025-11-23 23:48:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 23:48:43] HOME_URL="https://www.centos.org/"
[2025-11-23 23:48:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 23:48:43] 
[2025-11-23 23:48:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 23:48:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 23:48:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 23:48:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 23:48:43] 
[2025-11-23 23:48:43] 2025-11-24 04:48:08,192 | INFO     | ***************************************
[2025-11-23 23:48:43] 2025-11-24 04:48:08,695 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-23 23:48:43] 2025-11-24 04:48:08,778 | INFO     | sufficient remaining disk space (163089219584 B)
[2025-11-23 23:48:43] 2025-11-24 04:48:08,778 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 23:48:43] 2025-11-24 04:48:08,778 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 23:48:43] 2025-11-24 04:48:08,778 | INFO     | update_server=False
[2025-11-23 23:48:43] 2025-11-24 04:48:08,778 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 23:48:43] 2025-11-24 04:48:08,782 | INFO     | all job control threads have been joined
[2025-11-23 23:48:43] 2025-11-24 04:48:08,982 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 23:48:43] 2025-11-24 04:48:09,064 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 23:48:43] 2025-11-24 04:48:09,387 | INFO     | all payload control threads have been joined
[2025-11-23 23:48:43] 2025-11-24 04:48:09,433 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 23:48:43] 2025-11-24 04:48:09,434 | INFO     | aborting loop
[2025-11-23 23:48:43] 2025-11-24 04:48:09,785 | INFO     | [job] retrieve thread has finished
[2025-11-23 23:48:43] 2025-11-24 04:48:09,789 | INFO     | [job] control thread has finished
[2025-11-23 23:48:43] 2025-11-24 04:48:09,818 | INFO     | all data control threads have been joined
[2025-11-23 23:48:43] 2025-11-24 04:48:09,879 | INFO     | [data] copytool_in thread has finished
[2025-11-23 23:48:43] 2025-11-24 04:48:09,900 | INFO     | [job] validate thread has finished
[2025-11-23 23:48:43] 2025-11-24 04:48:09,981 | INFO     | [payload] validate_post thread has finished
[2025-11-23 23:48:43] 2025-11-24 04:48:09,988 | INFO     | [job] queue monitor thread has finished
[2025-11-23 23:48:43] 2025-11-24 04:48:10,057 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 23:48:43] 2025-11-24 04:48:10,073 | INFO     | [payload] failed_post thread has finished
[2025-11-23 23:48:43] 2025-11-24 04:48:10,393 | INFO     | [payload] control thread has finished
[2025-11-23 23:48:43] 2025-11-24 04:48:10,439 | INFO     | [job] job monitor thread has finished
[2025-11-23 23:48:43] 2025-11-24 04:48:10,827 | INFO     | [data] control thread has finished
[2025-11-23 23:48:43] 2025-11-24 04:48:10,917 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 23:48:43] 2025-11-24 04:48:10,918 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 23:48:43] 2025-11-24 04:48:10,924 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 23:48:43] 2025-11-24 04:48:11,062 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 23:48:43] 2025-11-24 04:48:12,063 | INFO     | [data] copytool_out thread has finished
[2025-11-23 23:48:43] 2025-11-24 04:48:13,081 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 23:48:43] 2025-11-24 04:48:14,089 | INFO     | [monitor] cgroup control has ended
[2025-11-23 23:48:43] 2025-11-24 04:48:16,138 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139734985918272)>', '<ExcThread(monitor, started 139734269552384)>']
[2025-11-23 23:48:43] 2025-11-24 04:48:21,164 | INFO     | all workflow threads have been joined
[2025-11-23 23:48:43] 2025-11-24 04:48:21,167 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 23:48:43] 2025-11-24 04:48:21,167 | INFO     | traces error code: 0
[2025-11-23 23:48:43] 2025-11-24 04:48:21,167 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 23:48:43] 2025-11-24 04:48:40,310 | INFO     | PID=880167 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-23 23:48:43] 2025-11-24 04:48:40,310 | INFO     | .. there are 29 such processes running
[2025-11-23 23:48:43] 2025-11-24 04:48:40,311 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 23:48:43] 2025-11-24 04:48:40,311 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 23:48:43] 2025-11-24 04:48:40,311 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 23:48:43] 2025-11-24 04:48:40,311 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 23:48:43] 2025-11-24 04:48:40,311 | INFO     | [monitor] control thread has ended
[2025-11-23 23:48:43] 2025-11-24 04:48:41,667 [wrapper] ==== pilot stdout END ====
[2025-11-23 23:48:43] 2025-11-24 04:48:41,686 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 23:48:43] 2025-11-24 04:48:41,715 [wrapper] pilotpid: 880167
[2025-11-23 23:48:43] 2025-11-24 04:48:41,741 [wrapper] Pilot exit status: 0
[2025-11-23 23:48:43] 2025-11-24 04:48:41,825 [wrapper] pandaids: 6894266400
[2025-11-23 23:48:43] 2025-11-24 04:48:42,375 [wrapper] cleanup supervisor_pilot   13665 880168
[2025-11-23 23:48:43] 2025-11-24 04:48:42,378 [wrapper] Test setup, not cleaning
[2025-11-23 23:48:43] 2025-11-24 04:48:42,380 [wrapper] apfmon messages muted
[2025-11-23 23:48:43] 2025-11-24 04:48:42,382 [wrapper] ==== wrapper stdout END ====
[2025-11-23 23:48:43] 2025-11-24 04:48:42,384 [wrapper] ==== wrapper stderr END ====
[2025-11-23 23:48:43]  *** Error codes and diagnostics ***
[2025-11-23 23:48:43]     "exeErrorCode": 0,
[2025-11-23 23:48:43]     "exeErrorDiag": "",
[2025-11-23 23:48:43]     "pilotErrorCode": 0,
[2025-11-23 23:48:43]     "pilotErrorDiag": "",
[2025-11-23 23:48:43]  *** Listing of results directory ***
[2025-11-23 23:48:43] total 1304156
[2025-11-23 23:48:43] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 00:09 pilot3.tar.gz
[2025-11-23 23:48:43] -rwx------. 1 boincer umatlas     36292 Nov 21 00:13 runpilot2-wrapper.sh
[2025-11-23 23:48:43] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 00:13 queuedata.json
[2025-11-23 23:48:43] -rw-r--r--. 1 boincer umatlas       100 Nov 23 12:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 23:48:43] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 12:49 run_atlas
[2025-11-23 23:48:43] -rw-r--r--. 1 boincer umatlas       105 Nov 23 12:49 job.xml
[2025-11-23 23:48:43] -rw-r--r--. 2 boincer umatlas 409269918 Nov 23 12:49 EVNT.47493127._002231.pool.root.1
[2025-11-23 23:48:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 12:49 start_atlas.sh
[2025-11-23 23:48:43] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 12:49 shared
[2025-11-23 23:48:43] -rw-r--r--. 2 boincer umatlas    590100 Nov 23 12:49 input.tar.gz
[2025-11-23 23:48:43] -rw-r--r--. 1 boincer umatlas         0 Nov 23 12:49 boinc_lockfile
[2025-11-23 23:48:43] -rw-r--r--. 1 boincer umatlas      2786 Nov 23 12:49 pandaJob.out
[2025-11-23 23:48:43] -rw-------. 1 boincer umatlas        57 Nov 23 12:49 setup.sh.local
[2025-11-23 23:48:43] -rw-------. 1 boincer umatlas    989786 Nov 23 12:51 agis_schedconf.cvmfs.json
[2025-11-23 23:48:43] drwx------. 5 boincer umatlas      4096 Nov 23 12:51 pilot3
[2025-11-23 23:48:43] -rw-r--r--. 1 boincer umatlas       533 Nov 23 23:25 boinc_task_state.xml
[2025-11-23 23:48:43] -rw-r--r--. 1 boincer umatlas      7175 Nov 23 23:45 init_data.xml
[2025-11-23 23:48:43] -rw-------. 1 boincer umatlas 908659048 Nov 23 23:46 HITS.47533967._002024.pool.root.1
[2025-11-23 23:48:43] -rw-------. 1 boincer umatlas      1074 Nov 23 23:47 memory_monitor_summary.json
[2025-11-23 23:48:43] -rw-------. 1 boincer umatlas   1526164 Nov 23 23:47 agis_ddmendpoints.agis.ALL.json
[2025-11-23 23:48:43] -rw-------. 1 boincer umatlas   1869061 Nov 23 23:47 log.47533967._002024.job.log.tgz.1
[2025-11-23 23:48:43] -rw-------. 1 boincer umatlas      8637 Nov 23 23:48 heartbeat.json
[2025-11-23 23:48:43] -rw-r--r--. 1 boincer umatlas        29 Nov 23 23:48 wrapper_checkpoint.txt
[2025-11-23 23:48:43] -rw-------. 1 boincer umatlas       822 Nov 23 23:48 pilotlog.txt
[2025-11-23 23:48:43] -rw-------. 1 boincer umatlas        95 Nov 23 23:48 pilot_heartbeat.json
[2025-11-23 23:48:43] -rw-------. 1 boincer umatlas   4940876 Nov 23 23:48 log.47533967._002024.job.log.1
[2025-11-23 23:48:43] -rw-------. 1 boincer umatlas       353 Nov 23 23:48 output.list
[2025-11-23 23:48:43] -rw-r--r--. 1 boincer umatlas       620 Nov 23 23:48 runtime_log
[2025-11-23 23:48:43] -rw-------. 1 boincer umatlas   6830080 Nov 23 23:48 result.tar.gz
[2025-11-23 23:48:43] -rw-r--r--. 1 boincer umatlas      9343 Nov 23 23:48 runtime_log.err
[2025-11-23 23:48:43] -rw-------. 1 boincer umatlas       666 Nov 23 23:48 ejBLDmadYg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm4LHKDmKm6iWm.diag
[2025-11-23 23:48:43] -rw-r--r--. 1 boincer umatlas      8192 Nov 23 23:48 boinc_mmap_file
[2025-11-23 23:48:43] -rw-r--r--. 1 boincer umatlas      2144 Nov 23 23:48 stderr.txt
[2025-11-23 23:48:43] HITS file was successfully produced:
[2025-11-23 23:48:43] -rw-------. 1 boincer umatlas 908659048 Nov 23 23:46 shared/HITS.pool.root.1
[2025-11-23 23:48:43]  *** Contents of shared directory: ***
[2025-11-23 23:48:43] total 1294320
[2025-11-23 23:48:43] -rw-r--r--. 2 boincer umatlas 409269918 Nov 23 12:49 ATLAS.root_0
[2025-11-23 23:48:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 12:49 start_atlas.sh
[2025-11-23 23:48:43] -rw-r--r--. 2 boincer umatlas    590100 Nov 23 12:49 input.tar.gz
[2025-11-23 23:48:43] -rw-------. 1 boincer umatlas 908659048 Nov 23 23:46 HITS.pool.root.1
[2025-11-23 23:48:43] -rw-------. 1 boincer umatlas   6830080 Nov 23 23:48 result.tar.gz
23:48:45 (857687): run_atlas exited; CPU time 140742.018771
23:48:45 (857687): called boinc_finish(0)

</stderr_txt>
]]>

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