Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:23:18 (21125): wrapper (7.7.26015): starting
07:23:18 (21125): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 07:23:19] Arguments: --nthreads 8
[2025-11-26 07:23:19] Threads: 8
[2025-11-26 07:23:19] Checking for CVMFS
[2025-11-26 07:23:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 07:23:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 07:23:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 07:23:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 07:23:21] 2.11.2.0 2946 284938 141804 153312 2 75 14091022 25165825 4214 130560 11 135104737 99.887 78504738 2767 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 07:23:21] CVMFS is ok
[2025-11-26 07:23:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 07:23:21] Checking for apptainer binary...
[2025-11-26 07:23:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 07:23:21] Running /usr/bin/apptainer --version
[2025-11-26 07:23:21] apptainer version 1.3.2-1.el7
[2025-11-26 07:23:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 07:23:30] cg-vwn485.simple-grid.lan
[2025-11-26 07:23:30] apptainer works
[2025-11-26 07:23:30] Set ATHENA_PROC_NUMBER=8
[2025-11-26 07:23:30] Set ATHENA_CORE_NUMBER=8
[2025-11-26 07:23:30] Starting ATLAS job with PandaID=6895337468
[2025-11-26 07:23:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 04:32:35]  *** The last 200 lines of the pilot log: ***
[2025-11-27 04:32:35] 2025-11-27 03:31:32,970 | INFO     | time since job start (75860s) is within the limit (172800.0s)
[2025-11-27 04:32:35] 2025-11-27 03:31:34,218 | INFO     | monitor loop #5146: job 0:6895337468 is in state 'finished'
[2025-11-27 04:32:35] 2025-11-27 03:31:34,219 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 04:32:35] 2025-11-27 03:31:34,977 | INFO     | time since job start (75862s) is within the limit (172800.0s)
[2025-11-27 04:32:35] 2025-11-27 03:31:36,727 | INFO     | monitor loop #5147: job 0:6895337468 is in state 'finished'
[2025-11-27 04:32:35] 2025-11-27 03:31:36,728 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 04:32:35] 2025-11-27 03:31:36,984 | INFO     | time since job start (75864s) is within the limit (172800.0s)
[2025-11-27 04:32:35] 2025-11-27 03:31:39,001 | INFO     | time since job start (75867s) is within the limit (172800.0s)
[2025-11-27 04:32:35] 2025-11-27 03:31:39,234 | INFO     | monitor loop #5148: job 0:6895337468 is in state 'finished'
[2025-11-27 04:32:35] 2025-11-27 03:31:39,235 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 04:32:35] 2025-11-27 03:31:40,323 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 04:32:35] 2025-11-27 03:31:40,324 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-27 04:32:35] 2025-11-27 03:31:40,333 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6895337468/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 04:32:35] 2025-11-27 03:31:40,334 | INFO     | extracted standard info from prmon json
[2025-11-27 04:32:35] 2025-11-27 03:31:40,334 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 04:32:35] 2025-11-27 03:31:40,334 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 04:32:35] 2025-11-27 03:31:40,363 | INFO     | fitting pss+swap vs Time
[2025-11-27 04:32:35] 2025-11-27 03:31:40,365 | INFO     | sum of square deviations: 582669521690.4744
[2025-11-27 04:32:35] 2025-11-27 03:31:40,429 | INFO     | sum of deviations: 3119022016346.9556
[2025-11-27 04:32:35] 2025-11-27 03:31:40,429 | INFO     | mean x: 1764176539.5405185
[2025-11-27 04:32:35] 2025-11-27 03:31:40,429 | INFO     | mean y: 2824019.530794165
[2025-11-27 04:32:35] 2025-11-27 03:31:40,430 | INFO     | intersect: -9440788976.710157
[2025-11-27 04:32:35] 2025-11-27 03:31:40,431 | INFO     | chi2: 23.443063953047922
[2025-11-27 04:32:35] 2025-11-27 03:31:40,437 | INFO     | sum of square deviations: 575615855462.5391
[2025-11-27 04:32:35] 2025-11-27 03:31:40,500 | INFO     | sum of deviations: 3527744892794.7764
[2025-11-27 04:32:35] 2025-11-27 03:31:40,500 | INFO     | mean x: 1764176387.044752
[2025-11-27 04:32:35] 2025-11-27 03:31:40,500 | INFO     | mean y: 2832855.113100081
[2025-11-27 04:32:35] 2025-11-27 03:31:40,501 | INFO     | intersect: -10809176891.187733
[2025-11-27 04:32:35] 2025-11-27 03:31:40,502 | INFO     | chi2: 20.22687764286747
[2025-11-27 04:32:35] 2025-11-27 03:31:40,502 | INFO     | current chi2=20.22687764286747 (change=13.719138064127929 %)
[2025-11-27 04:32:35] 2025-11-27 03:31:40,502 | INFO     | right removable region: 1228
[2025-11-27 04:32:35] 2025-11-27 03:31:40,504 | INFO     | sum of square deviations: 575615072222.5388
[2025-11-27 04:32:35] 2025-11-27 03:31:40,559 | INFO     | sum of deviations: 2599313211325.027
[2025-11-27 04:32:35] 2025-11-27 03:31:40,559 | INFO     | mean x: 1764176692.044752
[2025-11-27 04:32:35] 2025-11-27 03:31:40,559 | INFO     | mean y: 2835254.0903173313
[2025-11-27 04:32:35] 2025-11-27 03:31:40,559 | INFO     | intersect: -7963682656.981245
[2025-11-27 04:32:35] 2025-11-27 03:31:40,561 | INFO     | chi2: 18.534249204625308
[2025-11-27 04:32:35] 2025-11-27 03:31:40,561 | INFO     | current chi2=18.534249204625308 (change=20.93930536662807 %)
[2025-11-27 04:32:35] 2025-11-27 03:31:40,561 | INFO     | left removable region: 10
[2025-11-27 04:32:35] 2025-11-27 03:31:40,562 | INFO     | sum of square deviations: 560297112628.9238
[2025-11-27 04:32:35] 2025-11-27 03:31:40,619 | INFO     | sum of deviations: 2638143505253.026
[2025-11-27 04:32:35] 2025-11-27 03:31:40,620 | INFO     | mean x: 1764176661.5541873
[2025-11-27 04:32:35] 2025-11-27 03:31:40,620 | INFO     | mean y: 2856278.2799671595
[2025-11-27 04:32:35] 2025-11-27 03:31:40,620 | INFO     | intersect: -8303720887.468373
[2025-11-27 04:32:35] 2025-11-27 03:31:40,621 | INFO     | chi2: 10.758127803199773
[2025-11-27 04:32:35] 2025-11-27 03:31:40,622 | INFO     | current memory leak: 4.71 B/s (using 1218 data points, chi2=10.76)
[2025-11-27 04:32:35] 2025-11-27 03:31:40,623 | INFO     | could have reported an average CPU frequency of 2249 MHz (42 samples)
[2025-11-27 04:32:35] 2025-11-27 03:31:40,623 | INFO     | ..............................
[2025-11-27 04:32:35] 2025-11-27 03:31:40,623 | INFO     | . Timing measurements:
[2025-11-27 04:32:35] 2025-11-27 03:31:40,623 | INFO     | . get job = 0 s
[2025-11-27 04:32:35] 2025-11-27 03:31:40,626 | INFO     | . initial setup = 9 s
[2025-11-27 04:32:35] 2025-11-27 03:31:40,626 | INFO     | . payload setup = 157 s
[2025-11-27 04:32:35] 2025-11-27 03:31:40,627 | INFO     | . stage-in = 0 s
[2025-11-27 04:32:35] 2025-11-27 03:31:40,627 | INFO     | . payload execution = 75421 s
[2025-11-27 04:32:35] 2025-11-27 03:31:40,627 | INFO     | . stage-out = 5 s
[2025-11-27 04:32:35] 2025-11-27 03:31:40,627 | INFO     | . log creation = 2 s
[2025-11-27 04:32:35] 2025-11-27 03:31:40,627 | INFO     | ..............................
[2025-11-27 04:32:35] 2025-11-27 03:31:40,758 | INFO     | 
[2025-11-27 04:32:35] 2025-11-27 03:31:40,759 | INFO     | job summary report
[2025-11-27 04:32:35] 2025-11-27 03:31:40,759 | INFO     | --------------------------------------------------
[2025-11-27 04:32:35] 2025-11-27 03:31:40,759 | INFO     | PanDA job id: 6895337468
[2025-11-27 04:32:35] 2025-11-27 03:31:40,759 | INFO     | task id: 47556137
[2025-11-27 04:32:35] 2025-11-27 03:31:40,759 | INFO     | errors: (none)
[2025-11-27 04:32:35] 2025-11-27 03:31:40,759 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 04:32:35] 2025-11-27 03:31:40,759 | INFO     | pilot state: finished 
[2025-11-27 04:32:35] 2025-11-27 03:31:40,759 | INFO     | transexitcode: 0
[2025-11-27 04:32:35] 2025-11-27 03:31:40,759 | INFO     | exeerrorcode: 0
[2025-11-27 04:32:35] 2025-11-27 03:31:40,759 | INFO     | exeerrordiag: 
[2025-11-27 04:32:35] 2025-11-27 03:31:40,759 | INFO     | exitcode: 0
[2025-11-27 04:32:35] 2025-11-27 03:31:40,759 | INFO     | exitmsg: OK
[2025-11-27 04:32:35] 2025-11-27 03:31:40,759 | INFO     | cpuconsumptiontime: 283786 s
[2025-11-27 04:32:35] 2025-11-27 03:31:40,760 | INFO     | nevents: 1000
[2025-11-27 04:32:35] 2025-11-27 03:31:40,760 | INFO     | neventsw: 0
[2025-11-27 04:32:35] 2025-11-27 03:31:40,760 | INFO     | pid: 31525
[2025-11-27 04:32:35] 2025-11-27 03:31:40,760 | INFO     | pgrp: 31525
[2025-11-27 04:32:35] 2025-11-27 03:31:40,760 | INFO     | corecount: 8
[2025-11-27 04:32:35] 2025-11-27 03:31:40,760 | INFO     | event service: False
[2025-11-27 04:32:35] 2025-11-27 03:31:40,760 | INFO     | sizes: {0: 2284038, 1: 2284122, 2: 2284293, 12: 2284321, 23: 2284349, 34: 2284377, 45: 2284533, 55: 2284561, 66: 2284589, 77: 2284617, 87: 2284673, 90: 2285243, 98
[2025-11-27 04:32:35] 2025-11-27 03:31:40,760 | INFO     | --------------------------------------------------
[2025-11-27 04:32:35] 2025-11-27 03:31:40,760 | INFO     | 
[2025-11-27 04:32:35] 2025-11-27 03:31:40,760 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-27 04:32:35] 2025-11-27 03:31:41,008 | INFO     | time since job start (75869s) is within the limit (172800.0s)
[2025-11-27 04:32:35] 2025-11-27 03:31:41,246 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 04:32:35] 2025-11-27 03:31:41,246 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 04:32:35] 2025-11-27 03:31:41,246 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 04:32:35] 2025-11-27 03:31:41,246 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 04:32:35] 2025-11-27 03:31:41,246 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 04:32:35] 2025-11-27 03:31:41,246 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 04:32:35] 2025-11-27 03:31:41,246 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 04:32:35] 2025-11-27 03:31:41,247 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 04:32:35] 2025-11-27 03:31:41,247 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 04:32:35] 2025-11-27 03:31:41,247 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 04:32:35] 2025-11-27 03:31:41,247 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 04:32:35] 2025-11-27 03:31:41,247 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 04:32:35] 2025-11-27 03:31:41,247 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 04:32:35] 2025-11-27 03:31:41,247 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 04:32:35] 2025-11-27 03:31:41,247 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 04:32:35] 2025-11-27 03:31:41,247 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 04:32:35] 2025-11-27 03:31:41,247 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 04:32:35] 2025-11-27 03:31:41,247 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 04:32:35] 2025-11-27 03:31:41,247 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 04:32:35] 2025-11-27 03:31:41,247 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 04:32:35] 2025-11-27 03:31:41,248 | INFO     | job 6895337468 has completed (purged errors)
[2025-11-27 04:32:35] 2025-11-27 03:31:41,248 | INFO     | overall cleanup function is called
[2025-11-27 04:32:35] 2025-11-27 03:31:42,268 | INFO     | --- collectZombieJob: --- 10, [31525]
[2025-11-27 04:32:35] 2025-11-27 03:31:42,269 | INFO     | zombie collector waiting for pid 31525
[2025-11-27 04:32:35] 2025-11-27 03:31:42,269 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 04:32:35] 2025-11-27 03:31:42,269 | INFO     | collected zombie processes
[2025-11-27 04:32:35] 2025-11-27 03:31:42,269 | INFO     | will attempt to kill all subprocesses of pid=31525
[2025-11-27 04:32:35] 2025-11-27 03:31:42,270 | INFO     | killing group process 31515
[2025-11-27 04:32:35] 2025-11-27 03:31:42,270 | WARNING  | exception thrown when killing child group process under SIGTERM: [Errno 1] Operation not permitted
[2025-11-27 04:32:35] 2025-11-27 03:31:42,270 | WARNING  | exception thrown when killing child group process with SIGKILL: [Errno 1] Operation not permitted
[2025-11-27 04:32:35] 2025-11-27 03:31:42,392 | INFO     | process IDs to be killed: [31525] (in reverse order)
[2025-11-27 04:32:35] 2025-11-27 03:31:43,179 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 04:32:35] 2025-11-27 03:31:43,179 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 04:32:35] 2025-11-27 03:31:43,182 | INFO     | did not find any defunct processes belonging to 31525
[2025-11-27 04:32:35] 2025-11-27 03:31:43,184 | INFO     | did not find any defunct processes belonging to 31525
[2025-11-27 04:32:35] 2025-11-27 03:31:43,231 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 04:32:35] 2025-11-27 03:31:43,231 | INFO     | ready for new job
[2025-11-27 04:32:35] 2025-11-27 03:31:43,231 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 04:32:35] 2025-11-27 03:31:43,235 | INFO     | ***************************************
[2025-11-27 04:32:35] 2025-11-27 03:31:43,235 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 04:32:35] 2025-11-27 03:31:43,236 | INFO     | ***************************************
[2025-11-27 04:32:35] 2025-11-27 03:31:43,236 | INFO     | 
[2025-11-27 04:32:35] 2025-11-27 03:31:43,236 | INFO     | pilot is running in a VM
[2025-11-27 04:32:35] 2025-11-27 03:31:43,236 | INFO     | architecture information:
[2025-11-27 04:32:35] 2025-11-27 03:31:43,249 | INFO     | executing command: cat /etc/os-release
[2025-11-27 04:32:35] 2025-11-27 03:31:43,484 | INFO     | cat /etc/os-release:
[2025-11-27 04:32:35] NAME="CentOS Linux"
[2025-11-27 04:32:35] VERSION="7 (Core)"
[2025-11-27 04:32:35] ID="centos"
[2025-11-27 04:32:35] ID_LIKE="rhel fedora"
[2025-11-27 04:32:35] VERSION_ID="7"
[2025-11-27 04:32:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 04:32:35] ANSI_COLOR="0;31"
[2025-11-27 04:32:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 04:32:35] HOME_URL="https://www.centos.org/"
[2025-11-27 04:32:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 04:32:35] 
[2025-11-27 04:32:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 04:32:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 04:32:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 04:32:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 04:32:35] 
[2025-11-27 04:32:35] 2025-11-27 03:31:43,484 | INFO     | ***************************************
[2025-11-27 04:32:35] 2025-11-27 03:31:43,988 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-27 04:32:35] 2025-11-27 03:31:44,247 | INFO     | sufficient remaining disk space (495634612224 B)
[2025-11-27 04:32:35] 2025-11-27 03:31:44,248 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 04:32:35] 2025-11-27 03:31:44,248 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 04:32:35] 2025-11-27 03:31:44,248 | INFO     | update_server=False
[2025-11-27 04:32:35] 2025-11-27 03:31:44,248 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 04:32:35] 2025-11-27 03:31:44,248 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 04:32:35] 2025-11-27 03:31:44,249 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 04:32:35] 2025-11-27 03:31:44,249 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 04:32:35] 2025-11-27 03:31:44,249 | INFO     | will abort loop
[2025-11-27 04:32:35] 2025-11-27 03:31:44,251 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 04:32:35] 2025-11-27 03:31:44,443 | INFO     | all data control threads have been joined
[2025-11-27 04:32:35] 2025-11-27 03:31:44,518 | INFO     | all payload control threads have been joined
[2025-11-27 04:32:35] 2025-11-27 03:31:44,835 | INFO     | all job control threads have been joined
[2025-11-27 04:32:35] 2025-11-27 03:31:45,254 | INFO     | [job] retrieve thread has finished
[2025-11-27 04:32:35] 2025-11-27 03:31:45,255 | INFO     | [job] job monitor thread has finished
[2025-11-27 04:32:35] 2025-11-27 03:31:45,450 | INFO     | [data] control thread has finished
[2025-11-27 04:32:35] 2025-11-27 03:31:45,525 | INFO     | [payload] control thread has finished
[2025-11-27 04:32:35] 2025-11-27 03:31:45,613 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 04:32:35] 2025-11-27 03:31:45,756 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 04:32:35] 2025-11-27 03:31:45,774 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 04:32:35] 2025-11-27 03:31:45,841 | INFO     | [job] control thread has finished
[2025-11-27 04:32:35] 2025-11-27 03:31:46,007 | INFO     | [job] validate thread has finished
[2025-11-27 04:32:35] 2025-11-27 03:31:46,212 | INFO     | [data] copytool_in thread has finished
[2025-11-27 04:32:35] 2025-11-27 03:31:46,258 | INFO     | [data] copytool_out thread has finished
[2025-11-27 04:32:35] 2025-11-27 03:31:46,322 | INFO     | [payload] validate_post thread has finished
[2025-11-27 04:32:35] 2025-11-27 03:31:46,332 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 04:32:35] 2025-11-27 03:31:46,334 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 04:32:35] 2025-11-27 03:31:46,628 | INFO     | [payload] failed_post thread has finished
[2025-11-27 04:32:35] 2025-11-27 03:31:46,745 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 04:32:35] 2025-11-27 03:31:46,780 | INFO     | [job] queue monitor thread has finished
[2025-11-27 04:32:35] 2025-11-27 03:31:50,341 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 04:32:35] 2025-11-27 03:32:14,219 | INFO     | PID=24898 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 04:32:35] 2025-11-27 03:32:14,220 | INFO     | .. there are 9 such processes running
[2025-11-27 04:32:35] 2025-11-27 03:32:14,220 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 04:32:35] 2025-11-27 03:32:14,220 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 04:32:35] 2025-11-27 03:32:14,220 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 04:32:35] 2025-11-27 03:32:24,160 | INFO     | [monitor] cgroup control has ended
[2025-11-27 04:32:35] 2025-11-27 03:32:25,167 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140260205426496)>', '<ExcThread(monitor, started 140259899713280)>']
[2025-11-27 04:32:35] 2025-11-27 03:32:25,283 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 04:32:35] 2025-11-27 03:32:25,284 | INFO     | [monitor] control thread has ended
[2025-11-27 04:32:35] 2025-11-27 03:32:30,193 | INFO     | all workflow threads have been joined
[2025-11-27 04:32:35] 2025-11-27 03:32:30,194 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 04:32:35] 2025-11-27 03:32:30,194 | INFO     | traces error code: 0
[2025-11-27 04:32:35] 2025-11-27 03:32:30,194 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 04:32:35] 2025-11-27 03:32:30,524 [wrapper] ==== pilot stdout END ====
[2025-11-27 04:32:35] 2025-11-27 03:32:30,630 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 04:32:35] 2025-11-27 03:32:30,713 [wrapper] pilotpid: 24898
[2025-11-27 04:32:35] 2025-11-27 03:32:30,830 [wrapper] Pilot exit status: 0
[2025-11-27 04:32:35] 2025-11-27 03:32:31,184 [wrapper] pandaids: 6895337468
[2025-11-27 04:32:35] 2025-11-27 03:32:31,904 [wrapper] cleanup supervisor_pilot 29770 24899
[2025-11-27 04:32:35] 2025-11-27 03:32:32,051 [wrapper] Test setup, not cleaning
[2025-11-27 04:32:35] 2025-11-27 03:32:32,128 [wrapper] apfmon messages muted
[2025-11-27 04:32:35] 2025-11-27 03:32:32,198 [wrapper] ==== wrapper stdout END ====
[2025-11-27 04:32:35] 2025-11-27 03:32:32,287 [wrapper] ==== wrapper stderr END ====
[2025-11-27 04:32:35]  *** Error codes and diagnostics ***
[2025-11-27 04:32:35]     "exeErrorCode": 0,
[2025-11-27 04:32:35]     "exeErrorDiag": "",
[2025-11-27 04:32:35]     "pilotErrorCode": 0,
[2025-11-27 04:32:35]     "pilotErrorDiag": "",
[2025-11-27 04:32:35]  *** Listing of results directory ***
[2025-11-27 04:32:35] total 1310636
[2025-11-27 04:32:35] -rw-r--r--. 1 boinc boinc    576529 Nov 22 08:52 pilot3.tar.gz
[2025-11-27 04:32:35] -rwx------. 1 boinc boinc     36292 Nov 22 09:03 runpilot2-wrapper.sh
[2025-11-27 04:32:35] -rw-r--r--. 1 boinc boinc      5112 Nov 22 09:03 queuedata.json
[2025-11-27 04:32:35] -rw-r--r--. 1 boinc boinc       100 Nov 26 07:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 04:32:35] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 07:23 run_atlas
[2025-11-27 04:32:35] -rw-r--r--. 1 boinc boinc       105 Nov 26 07:23 job.xml
[2025-11-27 04:32:35] -rw-r--r--. 1 boinc boinc      6393 Nov 26 07:23 init_data.xml
[2025-11-27 04:32:35] -rw-r--r--. 2 boinc boinc 407699643 Nov 26 07:23 EVNT.47483658._000307.pool.root.1
[2025-11-27 04:32:35] -rw-r--r--. 2 boinc boinc     15847 Nov 26 07:23 start_atlas.sh
[2025-11-27 04:32:35] drwxrwx--x. 2 boinc boinc        68 Nov 26 07:23 shared
[2025-11-27 04:32:35] -rw-r--r--. 2 boinc boinc    590102 Nov 26 07:23 input.tar.gz
[2025-11-27 04:32:35] -rw-r--r--. 1 boinc boinc         0 Nov 26 07:23 boinc_lockfile
[2025-11-27 04:32:35] -rw-r--r--. 1 boinc boinc      2785 Nov 26 07:23 pandaJob.out
[2025-11-27 04:32:35] -rw-------. 1 boinc boinc    991877 Nov 26 07:27 agis_schedconf.cvmfs.json
[2025-11-27 04:32:35] drwx------. 5 boinc boinc      4096 Nov 26 07:27 pilot3
[2025-11-27 04:32:35] -rw-r--r--. 1 boinc boinc       533 Nov 27 04:10 boinc_task_state.xml
[2025-11-27 04:32:35] -rw-------. 1 boinc boinc 905455684 Nov 27 04:28 HITS.47556137._003033.pool.root.1
[2025-11-27 04:32:35] -rw-------. 1 boinc boinc      1030 Nov 27 04:29 memory_monitor_summary.json
[2025-11-27 04:32:35] -rw-------. 1 boinc boinc   1516240 Nov 27 04:29 agis_ddmendpoints.agis.ALL.json
[2025-11-27 04:32:35] -rw-------. 1 boinc boinc   2354901 Nov 27 04:30 log.47556137._003033.job.log.tgz.1
[2025-11-27 04:32:35] -rw-------. 1 boinc boinc        95 Nov 27 04:31 pilot_heartbeat.json
[2025-11-27 04:32:35] -rw-------. 1 boinc boinc      8626 Nov 27 04:31 heartbeat.json
[2025-11-27 04:32:35] -rw-r--r--. 1 boinc boinc      8192 Nov 27 04:32 boinc_mmap_file
[2025-11-27 04:32:35] -rw-r--r--. 1 boinc boinc        29 Nov 27 04:32 wrapper_checkpoint.txt
[2025-11-27 04:32:35] -rw-------. 1 boinc boinc      5071 Nov 27 04:32 pilotlog.txt
[2025-11-27 04:32:35] -rw-------. 1 boinc boinc  10158318 Nov 27 04:32 log.47556137._003033.job.log.1
[2025-11-27 04:32:35] -rw-------. 1 boinc boinc       353 Nov 27 04:32 output.list
[2025-11-27 04:32:35] -rw-r--r--. 1 boinc boinc       620 Nov 27 04:32 runtime_log
[2025-11-27 04:32:35] -rw-------. 1 boinc boinc  12533760 Nov 27 04:32 result.tar.gz
[2025-11-27 04:32:35] -rw-r--r--. 1 boinc boinc      8833 Nov 27 04:32 runtime_log.err
[2025-11-27 04:32:35] -rw-------. 1 boinc boinc       662 Nov 27 04:32 bXWKDmclxg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmI1HKDmrzebEo.diag
[2025-11-27 04:32:35] -rw-r--r--. 1 boinc boinc     21440 Nov 27 04:32 stderr.txt
[2025-11-27 04:32:35] HITS file was successfully produced:
[2025-11-27 04:32:35] -rw-------. 1 boinc boinc 905455684 Nov 27 04:28 shared/HITS.pool.root.1
[2025-11-27 04:32:35]  *** Contents of shared directory: ***
[2025-11-27 04:32:35] total 1295220
[2025-11-27 04:32:35] -rw-r--r--. 2 boinc boinc 407699643 Nov 26 07:23 ATLAS.root_0
[2025-11-27 04:32:35] -rw-r--r--. 2 boinc boinc     15847 Nov 26 07:23 start_atlas.sh
[2025-11-27 04:32:35] -rw-r--r--. 2 boinc boinc    590102 Nov 26 07:23 input.tar.gz
[2025-11-27 04:32:35] -rw-------. 1 boinc boinc 905455684 Nov 27 04:28 HITS.pool.root.1
[2025-11-27 04:32:35] -rw-------. 1 boinc boinc  12533760 Nov 27 04:32 result.tar.gz
04:32:36 (21125): run_atlas exited; CPU time 284210.239281
04:32:36 (21125): called boinc_finish(0)

</stderr_txt>
]]>

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