Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:04:52 (13692): wrapper (7.7.26015): starting
12:04:52 (13692): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 12:04:52] Arguments: --nthreads 8
[2025-11-23 12:04:52] Threads: 8
[2025-11-23 12:04:52] Checking for CVMFS
[2025-11-23 12:04:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 12:04:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 12:04:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 12:04:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 12:04:52] 2.11.2.0 21766 113655 137584 153215 1 90 16122425 18432000 1885 130560 0 82234971 99.974 4739019 26894 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 12:04:52] CVMFS is ok
[2025-11-23 12:04:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 12:04:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 12:04:53] Further information can be found at the LHC@home message board.
[2025-11-23 12:04:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 12:04:53] Checking for apptainer binary...
[2025-11-23 12:04:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 12:04:53] Running /usr/bin/apptainer --version
[2025-11-23 12:04:53] apptainer version 1.3.2-1.el7
[2025-11-23 12:04:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 12:04:53] c-206-18.aglt2.org
[2025-11-23 12:04:53] apptainer works
[2025-11-23 12:04:53] Set ATHENA_PROC_NUMBER=8
[2025-11-23 12:04:53] Set ATHENA_CORE_NUMBER=8
[2025-11-23 12:04:53] Starting ATLAS job with PandaID=6895328708
[2025-11-23 12:04:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 07:17:17]  *** The last 200 lines of the pilot log: ***
[2025-11-24 07:17:17] 2025-11-24 12:16:44,468 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2483.4583333333335
[2025-11-24 07:17:17] 2025-11-24 12:16:44,471 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895328708/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 07:17:17] 2025-11-24 12:16:44,472 | INFO     | extracted standard info from prmon json
[2025-11-24 07:17:17] 2025-11-24 12:16:44,472 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 07:17:17] 2025-11-24 12:16:44,472 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 07:17:17] 2025-11-24 12:16:44,487 | INFO     | fitting pss+swap vs Time
[2025-11-24 07:17:17] 2025-11-24 12:16:44,489 | INFO     | sum of square deviations: 450989057173.786
[2025-11-24 07:17:17] 2025-11-24 12:16:44,510 | INFO     | monitor loop #4951: job 0:6895328708 is in state 'finished'
[2025-11-24 07:17:17] 2025-11-24 12:16:44,510 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 07:17:17] 2025-11-24 12:16:44,512 | INFO     | sum of deviations: 2337764471292.459
[2025-11-24 07:17:17] 2025-11-24 12:16:44,512 | INFO     | mean x: 1763952056.631068
[2025-11-24 07:17:17] 2025-11-24 12:16:44,512 | INFO     | mean y: 2862566.4245366286
[2025-11-24 07:17:17] 2025-11-24 12:16:44,512 | INFO     | intersect: -9140828131.743177
[2025-11-24 07:17:17] 2025-11-24 12:16:44,513 | INFO     | chi2: 5.9623960985755176
[2025-11-24 07:17:17] 2025-11-24 12:16:44,514 | INFO     | sum of square deviations: 445044828906.783
[2025-11-24 07:17:17] 2025-11-24 12:16:44,548 | INFO     | sum of deviations: 2697097089007.4316
[2025-11-24 07:17:17] 2025-11-24 12:16:44,549 | INFO     | mean x: 1763951904.1338654
[2025-11-24 07:17:17] 2025-11-24 12:16:44,549 | INFO     | mean y: 2871780.831560284
[2025-11-24 07:17:17] 2025-11-24 12:16:44,549 | INFO     | intersect: -10687173888.219585
[2025-11-24 07:17:17] 2025-11-24 12:16:44,550 | INFO     | chi2: 3.0100314174352265
[2025-11-24 07:17:17] 2025-11-24 12:16:44,550 | INFO     | current chi2=3.0100314174352265 (change=49.516413071678414 %)
[2025-11-24 07:17:17] 2025-11-24 12:16:44,551 | INFO     | sum of square deviations: 439153066739.7682
[2025-11-24 07:17:17] 2025-11-24 12:16:44,573 | INFO     | sum of deviations: 2802959567639.749
[2025-11-24 07:17:17] 2025-11-24 12:16:44,574 | INFO     | mean x: 1763951751.6366875
[2025-11-24 07:17:17] 2025-11-24 12:16:44,574 | INFO     | mean y: 2874517.4381121993
[2025-11-24 07:17:17] 2025-11-24 12:16:44,574 | INFO     | intersect: -11255809102.40056
[2025-11-24 07:17:17] 2025-11-24 12:16:44,575 | INFO     | chi2: 2.5983525861451766
[2025-11-24 07:17:17] 2025-11-24 12:16:44,575 | INFO     | current chi2=2.5983525861451766 (change=13.676894829251692 %)
[2025-11-24 07:17:17] 2025-11-24 12:16:44,575 | INFO     | right removable region: 1122
[2025-11-24 07:17:17] 2025-11-24 12:16:44,576 | INFO     | sum of square deviations: 445044392756.7834
[2025-11-24 07:17:17] 2025-11-24 12:16:44,599 | INFO     | sum of deviations: 2033237016494.772
[2025-11-24 07:17:17] 2025-11-24 12:16:44,599 | INFO     | mean x: 1763952209.1338654
[2025-11-24 07:17:17] 2025-11-24 12:16:44,599 | INFO     | mean y: 2870370.2730496456
[2025-11-24 07:17:17] 2025-11-24 12:16:44,599 | INFO     | intersect: -8055950244.727354
[2025-11-24 07:17:17] 2025-11-24 12:16:44,600 | INFO     | chi2: 3.818084047869944
[2025-11-24 07:17:17] 2025-11-24 12:16:44,600 | INFO     | current chi2=3.818084047869944 (change=35.9639315344694 %)
[2025-11-24 07:17:17] 2025-11-24 12:16:44,601 | INFO     | sum of square deviations: 439152400864.58026
[2025-11-24 07:17:17] 2025-11-24 12:16:44,624 | INFO     | sum of deviations: 1942878968267.0015
[2025-11-24 07:17:17] 2025-11-24 12:16:44,624 | INFO     | mean x: 1763952361.634016
[2025-11-24 07:17:17] 2025-11-24 12:16:44,624 | INFO     | mean y: 2872708.96349065
[2025-11-24 07:17:17] 2025-11-24 12:16:44,624 | INFO     | intersect: -7801128675.741346
[2025-11-24 07:17:17] 2025-11-24 12:16:44,625 | INFO     | chi2: 3.7325021002273893
[2025-11-24 07:17:17] 2025-11-24 12:16:44,625 | INFO     | current chi2=3.7325021002273893 (change=2.2414893587871525 %)
[2025-11-24 07:17:17] 2025-11-24 12:16:44,625 | INFO     | left removable region: 20
[2025-11-24 07:17:17] 2025-11-24 12:16:44,626 | INFO     | sum of square deviations: 414974283264.47925
[2025-11-24 07:17:17] 2025-11-24 12:16:44,659 | INFO     | sum of deviations: 2260954555827.5254
[2025-11-24 07:17:17] 2025-11-24 12:16:44,660 | INFO     | mean x: 1763952331.139746
[2025-11-24 07:17:17] 2025-11-24 12:16:44,660 | INFO     | mean y: 2889199.944646098
[2025-11-24 07:17:17] 2025-11-24 12:16:44,660 | INFO     | intersect: -9607865538.82828
[2025-11-24 07:17:17] 2025-11-24 12:16:44,662 | INFO     | chi2: 0.23623911413300494
[2025-11-24 07:17:17] 2025-11-24 12:16:44,662 | INFO     | current memory leak: 5.45 B/s (using 1102 data points, chi2=0.24)
[2025-11-24 07:17:17] 2025-11-24 12:16:44,663 | INFO     | could have reported an average CPU frequency of 2627 MHz (41 samples)
[2025-11-24 07:17:17] 2025-11-24 12:16:44,663 | INFO     | ..............................
[2025-11-24 07:17:17] 2025-11-24 12:16:44,664 | INFO     | . Timing measurements:
[2025-11-24 07:17:17] 2025-11-24 12:16:44,664 | INFO     | . get job = 0 s
[2025-11-24 07:17:17] 2025-11-24 12:16:44,664 | INFO     | . initial setup = 2 s
[2025-11-24 07:17:17] 2025-11-24 12:16:44,664 | INFO     | . payload setup = 5 s
[2025-11-24 07:17:17] 2025-11-24 12:16:44,664 | INFO     | . stage-in = 0 s
[2025-11-24 07:17:17] 2025-11-24 12:16:44,664 | INFO     | . payload execution = 69063 s
[2025-11-24 07:17:17] 2025-11-24 12:16:44,665 | INFO     | . stage-out = 3 s
[2025-11-24 07:17:17] 2025-11-24 12:16:44,665 | INFO     | . log creation = 0 s
[2025-11-24 07:17:17] 2025-11-24 12:16:44,665 | INFO     | ..............................
[2025-11-24 07:17:17] 2025-11-24 12:16:44,822 | INFO     | 
[2025-11-24 07:17:17] 2025-11-24 12:16:44,822 | INFO     | job summary report
[2025-11-24 07:17:17] 2025-11-24 12:16:44,822 | INFO     | --------------------------------------------------
[2025-11-24 07:17:17] 2025-11-24 12:16:44,823 | INFO     | PanDA job id: 6895328708
[2025-11-24 07:17:17] 2025-11-24 12:16:44,823 | INFO     | task id: 47556137
[2025-11-24 07:17:17] 2025-11-24 12:16:44,823 | INFO     | errors: (none)
[2025-11-24 07:17:17] 2025-11-24 12:16:44,823 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 07:17:17] 2025-11-24 12:16:44,823 | INFO     | pilot state: finished 
[2025-11-24 07:17:17] 2025-11-24 12:16:44,823 | INFO     | transexitcode: 0
[2025-11-24 07:17:17] 2025-11-24 12:16:44,823 | INFO     | exeerrorcode: 0
[2025-11-24 07:17:17] 2025-11-24 12:16:44,824 | INFO     | exeerrordiag: 
[2025-11-24 07:17:17] 2025-11-24 12:16:44,824 | INFO     | exitcode: 0
[2025-11-24 07:17:17] 2025-11-24 12:16:44,824 | INFO     | exitmsg: OK
[2025-11-24 07:17:17] 2025-11-24 12:16:44,824 | INFO     | cpuconsumptiontime: 533350 s
[2025-11-24 07:17:17] 2025-11-24 12:16:44,824 | INFO     | nevents: 1000
[2025-11-24 07:17:17] 2025-11-24 12:16:44,824 | INFO     | neventsw: 0
[2025-11-24 07:17:17] 2025-11-24 12:16:44,825 | INFO     | pid: 25341
[2025-11-24 07:17:17] 2025-11-24 12:16:44,825 | INFO     | pgrp: 25341
[2025-11-24 07:17:17] 2025-11-24 12:16:44,825 | INFO     | corecount: 8
[2025-11-24 07:17:17] 2025-11-24 12:16:44,825 | INFO     | event service: False
[2025-11-24 07:17:17] 2025-11-24 12:16:44,825 | INFO     | sizes: {0: 2298576, 1: 2298831, 5: 2299093, 12: 2299149, 69072: 2355321, 69076: 2365106, 69079: 2365290, 69085: 2365632}
[2025-11-24 07:17:17] 2025-11-24 12:16:44,825 | INFO     | --------------------------------------------------
[2025-11-24 07:17:17] 2025-11-24 12:16:44,826 | INFO     | 
[2025-11-24 07:17:17] 2025-11-24 12:16:44,826 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 07:17:17] 2025-11-24 12:16:44,844 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 07:17:17] 2025-11-24 12:16:44,844 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 07:17:17] 2025-11-24 12:16:44,844 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 07:17:17] 2025-11-24 12:16:44,845 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 07:17:17] 2025-11-24 12:16:44,845 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 07:17:17] 2025-11-24 12:16:44,845 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 07:17:17] 2025-11-24 12:16:44,845 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 07:17:17] 2025-11-24 12:16:44,845 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 07:17:17] 2025-11-24 12:16:44,846 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 07:17:17] 2025-11-24 12:16:44,846 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 07:17:17] 2025-11-24 12:16:44,846 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 07:17:17] 2025-11-24 12:16:44,846 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 07:17:17] 2025-11-24 12:16:44,846 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 07:17:17] 2025-11-24 12:16:44,847 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 07:17:17] 2025-11-24 12:16:44,847 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 07:17:17] 2025-11-24 12:16:44,847 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 07:17:17] 2025-11-24 12:16:44,847 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 07:17:17] 2025-11-24 12:16:44,847 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 07:17:17] 2025-11-24 12:16:44,847 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 07:17:17] 2025-11-24 12:16:44,848 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 07:17:17] 2025-11-24 12:16:44,848 | INFO     | job 6895328708 has completed (purged errors)
[2025-11-24 07:17:17] 2025-11-24 12:16:44,848 | INFO     | overall cleanup function is called
[2025-11-24 07:17:17] 2025-11-24 12:16:45,865 | INFO     | --- collectZombieJob: --- 10, [25341]
[2025-11-24 07:17:17] 2025-11-24 12:16:45,865 | INFO     | zombie collector waiting for pid 25341
[2025-11-24 07:17:17] 2025-11-24 12:16:45,865 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 07:17:17] 2025-11-24 12:16:45,866 | INFO     | collected zombie processes
[2025-11-24 07:17:17] 2025-11-24 12:16:45,866 | INFO     | will attempt to kill all subprocesses of pid=25341
[2025-11-24 07:17:17] 2025-11-24 12:16:46,049 | INFO     | process IDs to be killed: [25341] (in reverse order)
[2025-11-24 07:17:17] 2025-11-24 12:16:46,112 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 07:17:17] 2025-11-24 12:16:46,112 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 07:17:17] 2025-11-24 12:16:46,118 | INFO     | did not find any defunct processes belonging to 25341
[2025-11-24 07:17:17] 2025-11-24 12:16:46,122 | INFO     | did not find any defunct processes belonging to 25341
[2025-11-24 07:17:17] 2025-11-24 12:16:46,123 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 07:17:17] 2025-11-24 12:16:46,123 | INFO     | ready for new job
[2025-11-24 07:17:17] 2025-11-24 12:16:46,123 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 07:17:17] 2025-11-24 12:16:46,127 | INFO     | ***************************************
[2025-11-24 07:17:17] 2025-11-24 12:16:46,127 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 07:17:17] 2025-11-24 12:16:46,127 | INFO     | ***************************************
[2025-11-24 07:17:17] 2025-11-24 12:16:46,127 | INFO     | 
[2025-11-24 07:17:17] 2025-11-24 12:16:46,128 | INFO     | architecture information:
[2025-11-24 07:17:17] 2025-11-24 12:16:46,129 | INFO     | executing command: cat /etc/os-release
[2025-11-24 07:17:17] 2025-11-24 12:16:46,138 | INFO     | cat /etc/os-release:
[2025-11-24 07:17:17] NAME="CentOS Linux"
[2025-11-24 07:17:17] VERSION="7 (Core)"
[2025-11-24 07:17:17] ID="centos"
[2025-11-24 07:17:17] ID_LIKE="rhel fedora"
[2025-11-24 07:17:17] VERSION_ID="7"
[2025-11-24 07:17:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 07:17:17] ANSI_COLOR="0;31"
[2025-11-24 07:17:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 07:17:17] HOME_URL="https://www.centos.org/"
[2025-11-24 07:17:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 07:17:17] 
[2025-11-24 07:17:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 07:17:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 07:17:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 07:17:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 07:17:17] 
[2025-11-24 07:17:17] 2025-11-24 12:16:46,138 | INFO     | ***************************************
[2025-11-24 07:17:17] 2025-11-24 12:16:46,641 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 07:17:17] 2025-11-24 12:16:46,684 | INFO     | sufficient remaining disk space (26207059968 B)
[2025-11-24 07:17:17] 2025-11-24 12:16:46,684 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 07:17:17] 2025-11-24 12:16:46,684 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 07:17:17] 2025-11-24 12:16:46,685 | INFO     | update_server=False
[2025-11-24 07:17:17] 2025-11-24 12:16:46,685 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 07:17:17] 2025-11-24 12:16:46,685 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 07:17:17] 2025-11-24 12:16:46,774 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 07:17:17] 2025-11-24 12:16:46,823 | INFO     | all payload control threads have been joined
[2025-11-24 07:17:17] 2025-11-24 12:16:46,900 | INFO     | all data control threads have been joined
[2025-11-24 07:17:17] 2025-11-24 12:16:47,016 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 07:17:17] 2025-11-24 12:16:47,016 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 07:17:17] 2025-11-24 12:16:47,017 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 07:17:17] 2025-11-24 12:16:47,017 | INFO     | will abort loop
[2025-11-24 07:17:17] 2025-11-24 12:16:47,686 | INFO     | [job] queue monitor thread has finished
[2025-11-24 07:17:17] 2025-11-24 12:16:47,690 | INFO     | [job] retrieve thread has finished
[2025-11-24 07:17:17] 2025-11-24 12:16:47,784 | INFO     | [payload] validate_post thread has finished
[2025-11-24 07:17:17] 2025-11-24 12:16:47,829 | INFO     | [payload] control thread has finished
[2025-11-24 07:17:17] 2025-11-24 12:16:47,905 | INFO     | [data] control thread has finished
[2025-11-24 07:17:17] 2025-11-24 12:16:48,022 | INFO     | [job] job monitor thread has finished
[2025-11-24 07:17:17] 2025-11-24 12:16:48,023 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 07:17:17] 2025-11-24 12:16:48,032 | INFO     | [job] validate thread has finished
[2025-11-24 07:17:17] 2025-11-24 12:16:48,185 | INFO     | all job control threads have been joined
[2025-11-24 07:17:17] 2025-11-24 12:16:48,218 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 07:17:17] 2025-11-24 12:16:48,396 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 07:17:17] 2025-11-24 12:16:48,519 | INFO     | [data] copytool_in thread has finished
[2025-11-24 07:17:17] 2025-11-24 12:16:48,780 | INFO     | [data] copytool_out thread has finished
[2025-11-24 07:17:17] 2025-11-24 12:16:49,055 | INFO     | [payload] failed_post thread has finished
[2025-11-24 07:17:17] 2025-11-24 12:16:49,159 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 07:17:17] 2025-11-24 12:16:49,191 | INFO     | [job] control thread has finished
[2025-11-24 07:17:17] 2025-11-24 12:16:49,502 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 07:17:17] 2025-11-24 12:16:53,508 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 07:17:17] 2025-11-24 12:16:58,925 | INFO     | [monitor] cgroup control has ended
[2025-11-24 07:17:17] 2025-11-24 12:16:59,930 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140320684590912)>', '<ExcThread(monitor, started 140320238974720)>']
[2025-11-24 07:17:17] 2025-11-24 12:17:04,955 | INFO     | all workflow threads have been joined
[2025-11-24 07:17:17] 2025-11-24 12:17:04,955 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 07:17:17] 2025-11-24 12:17:04,955 | INFO     | traces error code: 0
[2025-11-24 07:17:17] 2025-11-24 12:17:04,956 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 07:17:17] 2025-11-24 12:17:17,379 | INFO     | PID=17377 has CPU usage=7.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 07:17:17] 2025-11-24 12:17:17,379 | INFO     | .. there are 3 such processes running
[2025-11-24 07:17:17] 2025-11-24 12:17:17,379 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 07:17:17] 2025-11-24 12:17:17,379 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 07:17:17] 2025-11-24 12:17:17,379 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 07:17:17] 2025-11-24 12:17:17,380 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 07:17:17] 2025-11-24 12:17:17,380 | INFO     | [monitor] control thread has ended
[2025-11-24 07:17:17] 2025-11-24 12:17:17,496 [wrapper] ==== pilot stdout END ====
[2025-11-24 07:17:17] 2025-11-24 12:17:17,498 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 07:17:17] 2025-11-24 12:17:17,501 [wrapper] pilotpid: 17377
[2025-11-24 07:17:17] 2025-11-24 12:17:17,503 [wrapper] Pilot exit status: 0
[2025-11-24 07:17:17] 2025-11-24 12:17:17,510 [wrapper] pandaids: 6895328708
[2025-11-24 07:17:17] 2025-11-24 12:17:17,544 [wrapper] cleanup supervisor_pilot 25320 17378
[2025-11-24 07:17:17] 2025-11-24 12:17:17,546 [wrapper] Test setup, not cleaning
[2025-11-24 07:17:17] 2025-11-24 12:17:17,548 [wrapper] apfmon messages muted
[2025-11-24 07:17:17] 2025-11-24 12:17:17,549 [wrapper] ==== wrapper stdout END ====
[2025-11-24 07:17:17] 2025-11-24 12:17:17,551 [wrapper] ==== wrapper stderr END ====
[2025-11-24 07:17:17]  *** Error codes and diagnostics ***
[2025-11-24 07:17:17]     "exeErrorCode": 0,
[2025-11-24 07:17:17]     "exeErrorDiag": "",
[2025-11-24 07:17:17]     "pilotErrorCode": 0,
[2025-11-24 07:17:17]     "pilotErrorDiag": "",
[2025-11-24 07:17:17]  *** Listing of results directory ***
[2025-11-24 07:17:17] total 1324936
[2025-11-24 07:17:17] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 12:05 pilot3.tar.gz
[2025-11-24 07:17:17] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 12:56 queuedata.json
[2025-11-24 07:17:17] -rwx------ 1 boincer umatlas     36292 Nov 21 12:56 runpilot2-wrapper.sh
[2025-11-24 07:17:17] -rw-r--r-- 1 boincer umatlas       100 Nov 23 12:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 07:17:17] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 12:04 run_atlas
[2025-11-24 07:17:17] -rw-r--r-- 1 boincer umatlas       105 Nov 23 12:04 job.xml
[2025-11-24 07:17:17] -rw-r--r-- 2 boincer umatlas 409235310 Nov 23 12:04 EVNT.47483658._000088.pool.root.1
[2025-11-24 07:17:17] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 12:04 start_atlas.sh
[2025-11-24 07:17:17] drwxrwx--x 2 boincer umatlas      4096 Nov 23 12:04 shared
[2025-11-24 07:17:17] -rw-r--r-- 2 boincer umatlas    590104 Nov 23 12:04 input.tar.gz
[2025-11-24 07:17:17] -rw-r--r-- 1 boincer umatlas         0 Nov 23 12:04 boinc_lockfile
[2025-11-24 07:17:17] -rw-r--r-- 1 boincer umatlas      2784 Nov 23 12:04 pandaJob.out
[2025-11-24 07:17:17] -rw------- 1 boincer umatlas        57 Nov 23 12:04 setup.sh.local
[2025-11-24 07:17:17] -rw------- 1 boincer umatlas    989785 Nov 23 12:05 agis_schedconf.cvmfs.json
[2025-11-24 07:17:17] drwx------ 5 boincer umatlas      4096 Nov 23 12:05 pilot3
[2025-11-24 07:17:17] -rw-r--r-- 1 boincer umatlas       533 Nov 24 07:05 boinc_task_state.xml
[2025-11-24 07:17:17] -rw-r--r-- 1 boincer umatlas      5954 Nov 24 07:09 init_data.xml
[2025-11-24 07:17:17] -rw------- 1 boincer umatlas 919791302 Nov 24 07:15 HITS.47556137._000879.pool.root.1
[2025-11-24 07:17:17] -rw------- 1 boincer umatlas      1068 Nov 24 07:16 memory_monitor_summary.json
[2025-11-24 07:17:17] -rw------- 1 boincer umatlas   1516227 Nov 24 07:16 agis_ddmendpoints.agis.ALL.json
[2025-11-24 07:17:17] -rw------- 1 boincer umatlas   2310303 Nov 24 07:16 log.47556137._000879.job.log.tgz.1
[2025-11-24 07:17:17] -rw------- 1 boincer umatlas        95 Nov 24 07:16 pilot_heartbeat.json
[2025-11-24 07:17:17] -rw------- 1 boincer umatlas      8656 Nov 24 07:16 heartbeat.json
[2025-11-24 07:17:17] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 07:17 boinc_mmap_file
[2025-11-24 07:17:17] -rw-r--r-- 1 boincer umatlas        29 Nov 24 07:17 wrapper_checkpoint.txt
[2025-11-24 07:17:17] -rw------- 1 boincer umatlas       820 Nov 24 07:17 pilotlog.txt
[2025-11-24 07:17:17] -rw------- 1 boincer umatlas   9586614 Nov 24 07:17 log.47556137._000879.job.log.1
[2025-11-24 07:17:17] -rw------- 1 boincer umatlas       353 Nov 24 07:17 output.list
[2025-11-24 07:17:17] -rw-r--r-- 1 boincer umatlas       620 Nov 24 07:17 runtime_log
[2025-11-24 07:17:17] -rw------- 1 boincer umatlas  11919360 Nov 24 07:17 result.tar.gz
[2025-11-24 07:17:17] -rw-r--r-- 1 boincer umatlas      9343 Nov 24 07:17 runtime_log.err
[2025-11-24 07:17:17] -rw------- 1 boincer umatlas       668 Nov 24 07:17 r0RKDm2Xkg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1kHKDmWOZI2n.diag
[2025-11-24 07:17:17] -rw-r--r-- 1 boincer umatlas     21322 Nov 24 07:17 stderr.txt
[2025-11-24 07:17:17] HITS file was successfully produced:
[2025-11-24 07:17:17] -rw------- 1 boincer umatlas 919791302 Nov 24 07:15 shared/HITS.pool.root.1
[2025-11-24 07:17:17]  *** Contents of shared directory: ***
[2025-11-24 07:17:17] total 1310120
[2025-11-24 07:17:17] -rw-r--r-- 2 boincer umatlas 409235310 Nov 23 12:04 ATLAS.root_0
[2025-11-24 07:17:17] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 12:04 start_atlas.sh
[2025-11-24 07:17:17] -rw-r--r-- 2 boincer umatlas    590104 Nov 23 12:04 input.tar.gz
[2025-11-24 07:17:17] -rw------- 1 boincer umatlas 919791302 Nov 24 07:15 HITS.pool.root.1
[2025-11-24 07:17:17] -rw------- 1 boincer umatlas  11919360 Nov 24 07:17 result.tar.gz
07:17:19 (13692): run_atlas exited; CPU time 532127.199753
07:17:19 (13692): called boinc_finish(0)

</stderr_txt>
]]>

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