Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-26 11:08:41 (559357): vboxwrapper version 26210
2025-11-26 11:08:41 (559357): BOINC client version: 7.16.6
2025-11-26 11:08:42 (559357): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-11-26 11:08:42 (559357): Successfully copied 'init_data.xml' to the shared directory.
2025-11-26 11:08:42 (559357): Create VM. (boinc_d7dcf58f1a986002, slot#0)
2025-11-26 11:08:42 (559357): Setting Memory Size for VM. (4800MB)
2025-11-26 11:08:42 (559357): Setting CPU Count for VM. (8)
2025-11-26 11:08:42 (559357): Setting Chipset Options for VM.
2025-11-26 11:08:43 (559357): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-26 11:08:43 (559357): Setting Boot Options for VM.
2025-11-26 11:08:43 (559357): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-26 11:08:43 (559357): Enabling VM Network Access.
2025-11-26 11:08:43 (559357): Disabling USB Support for VM.
2025-11-26 11:08:43 (559357): Disabling COM Port Support for VM.
2025-11-26 11:08:44 (559357): Disabling LPT Port Support for VM.
2025-11-26 11:08:44 (559357): Disabling Audio Support for VM.
2025-11-26 11:08:44 (559357): Disabling Clipboard Support for VM.
2025-11-26 11:08:44 (559357): Disabling Drag and Drop Support for VM.
2025-11-26 11:08:44 (559357): Adding storage controller(s) to VM.
2025-11-26 11:08:44 (559357): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-26 11:08:45 (559357): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-26 11:08:45 (559357): forwarding host port 46521 to guest port 80
2025-11-26 11:08:45 (559357): Enabling remote desktop for VM.
2025-11-26 11:08:45 (559357): Enabling shared directory for VM.
2025-11-26 11:08:46 (559357): Starting VM using VBoxManage interface. (boinc_d7dcf58f1a986002, slot#0)
2025-11-26 11:08:47 (559357): Successfully started VM. (PID = '559797')
2025-11-26 11:08:47 (559357): Reporting VM Process ID to BOINC.
2025-11-26 11:08:47 (559357): Guest Log: BIOS: VirtualBox 6.1.50
2025-11-26 11:08:47 (559357): Guest Log: CPUID EDX: 0x178bfbff
2025-11-26 11:08:47 (559357): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-26 11:08:47 (559357): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-26 11:08:47 (559357): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-26 11:08:47 (559357): Detected: Web Application Enabled (http://localhost:46521)
2025-11-26 11:08:47 (559357): Detected: Remote Desktop Enabled (localhost:57541)
2025-11-26 11:08:47 (559357): Preference change detected
2025-11-26 11:08:47 (559357): Setting CPU throttle for VM. (90%)
2025-11-26 11:08:47 (559357): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 90 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-26 11:08:49 (559357): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-26 11:08:49 (559357): Guest Log: BIOS: Booting from Hard Disk...
2025-11-26 11:08:52 (559357): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-26 11:08:52 (559357): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-26 11:08:52 (559357): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-26 11:08:52 (559357): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-26 11:08:52 (559357): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-26 11:08:52 (559357): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-26 11:08:52 (559357): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-26 11:08:52 (559357): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-26 11:08:52 (559357): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-26 11:08:52 (559357): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-26 11:08:52 (559357): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-26 11:08:52 (559357): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-26 11:08:52 (559357): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-26 11:08:52 (559357): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-26 11:08:52 (559357): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-26 11:08:52 (559357): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-26 11:08:52 (559357): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-26 11:08:52 (559357): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-26 11:08:52 (559357): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-26 11:08:52 (559357): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-26 11:08:52 (559357): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-26 11:08:52 (559357): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-26 11:08:52 (559357): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-26 11:08:52 (559357): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-26 11:08:52 (559357): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-26 11:08:52 (559357): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-26 11:08:52 (559357): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-26 11:08:52 (559357): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-26 11:08:52 (559357): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-26 11:08:52 (559357): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-26 11:08:52 (559357): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-26 11:08:52 (559357): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-26 11:09:04 (559357): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-26 11:09:04 (559357): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-11-26 11:09:27 (559357): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-26 11:09:27 (559357): Guest Log: 00:00:00.000393 main     Log opened 2025-11-26T18:09:25.059050000Z
2025-11-26 11:09:27 (559357): Guest Log: 00:00:00.000793 main     OS Product: Linux
2025-11-26 11:09:27 (559357): Guest Log: 00:00:00.000888 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-26 11:09:27 (559357): Guest Log: 00:00:00.000960 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-26 11:09:27 (559357): Guest Log: 00:00:00.001031 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-26 11:09:27 (559357): Guest Log: 00:00:00.001034 main     Process ID: 1366
2025-11-26 11:09:27 (559357): Guest Log: 00:00:00.001035 main     Package type: LINUX_64BITS_GENERIC
2025-11-26 11:09:27 (559357): Guest Log: 00:00:00.003274 main     5.2.32 r132073 started. Verbose level = 0
2025-11-26 11:09:27 (559357): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-26 11:09:27 (559357): Guest Log: [INFO] Mounting shared directory
2025-11-26 11:09:28 (559357): Guest Log: [INFO] Checking for init_data.xml
2025-11-26 11:10:19 (559357): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-26 11:10:19 (559357): Guest Log: [INFO] Detected branch: prod
2025-11-26 11:10:19 (559357): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-26 11:10:19 (559357): Guest Log: Copying input files
2025-11-26 11:10:24 (559357): Guest Log: Copied input files into RunAtlas.
2025-11-26 11:10:24 (559357): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-26 11:10:24 (559357): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-26 11:10:24 (559357): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-26 11:10:24 (559357): Guest Log: Further information can be found at the LHC@home message board.
2025-11-26 11:10:40 (559357): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-26 11:10:40 (559357): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-26 11:10:40 (559357): Guest Log: 2.6.3.0 1665 0 30168 153330 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-26 11:10:44 (559357): Guest Log: copied the webapp to /var/www
2025-11-26 11:10:44 (559357): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-26 11:10:44 (559357): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-26 11:10:45 (559357): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-26 11:10:45 (559357): Guest Log:  *** Starting ATLAS job. (PandaID=6895348410 taskID=47556137) ***
2025-11-26 12:47:53 (559357): Status Report: Elapsed Time: '6000.000000'
2025-11-26 12:47:53 (559357): Status Report: CPU Time: '38422.790000'
2025-11-26 14:26:59 (559357): Status Report: Elapsed Time: '12000.000000'
2025-11-26 14:26:59 (559357): Status Report: CPU Time: '80882.220000'
2025-11-26 16:06:05 (559357): Status Report: Elapsed Time: '18000.000000'
2025-11-26 16:06:05 (559357): Status Report: CPU Time: '123354.150000'
2025-11-26 17:45:11 (559357): Status Report: Elapsed Time: '24000.000000'
2025-11-26 17:45:11 (559357): Status Report: CPU Time: '165819.970000'
2025-11-26 19:24:17 (559357): Status Report: Elapsed Time: '30000.000000'
2025-11-26 19:24:17 (559357): Status Report: CPU Time: '208281.140000'
2025-11-26 21:03:23 (559357): Status Report: Elapsed Time: '36000.000000'
2025-11-26 21:03:23 (559357): Status Report: CPU Time: '250750.750000'
2025-11-26 22:42:29 (559357): Status Report: Elapsed Time: '42000.000000'
2025-11-26 22:42:29 (559357): Status Report: CPU Time: '293216.190000'
2025-11-27 00:21:35 (559357): Status Report: Elapsed Time: '48000.000000'
2025-11-27 00:21:35 (559357): Status Report: CPU Time: '335688.830000'
2025-11-27 02:00:41 (559357): Status Report: Elapsed Time: '54000.000000'
2025-11-27 02:00:41 (559357): Status Report: CPU Time: '378147.430000'
2025-11-27 03:39:47 (559357): Status Report: Elapsed Time: '60000.000000'
2025-11-27 03:39:47 (559357): Status Report: CPU Time: '420611.140000'
2025-11-27 05:18:53 (559357): Status Report: Elapsed Time: '66000.000000'
2025-11-27 05:18:53 (559357): Status Report: CPU Time: '463073.790000'
2025-11-27 06:58:00 (559357): Status Report: Elapsed Time: '72000.000000'
2025-11-27 06:58:00 (559357): Status Report: CPU Time: '505530.740000'
2025-11-27 08:37:06 (559357): Status Report: Elapsed Time: '78000.000000'
2025-11-27 08:37:06 (559357): Status Report: CPU Time: '547989.240000'
2025-11-27 10:16:12 (559357): Status Report: Elapsed Time: '84000.000000'
2025-11-27 10:16:12 (559357): Status Report: CPU Time: '590457.980000'
2025-11-27 11:18:28 (559357): Guest Log:  *** Job finished ***
2025-11-27 11:18:28 (559357): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-27 11:18:28 (559357): Guest Log: 2025-11-27 18:17:53,494 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-27 11:18:28 (559357): Guest Log: 2025-11-27 18:17:53,494 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-27 11:18:28 (559357): Guest Log: 2025-11-27 18:18:19,724 | INFO     | [monitor] cgroup control has ended
2025-11-27 11:18:28 (559357): Guest Log: 2025-11-27 18:18:20,290 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139687539447616)>', '<ExcThread(monitor, started 139686924232448)>']
2025-11-27 11:18:28 (559357): Guest Log: 2025-11-27 18:18:20,640 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-27 11:18:28 (559357): Guest Log: 2025-11-27 18:18:20,640 | INFO     | [monitor] control thread has ended
2025-11-27 11:18:28 (559357): Guest Log: 2025-11-27 18:18:25,295 | INFO     | all workflow threads have been joined
2025-11-27 11:18:28 (559357): Guest Log: 2025-11-27 18:18:25,296 | INFO     | end of generic workflow (traces error code: 0)
2025-11-27 11:18:28 (559357): Guest Log: 2025-11-27 18:18:25,296 | INFO     | traces error code: 0
2025-11-27 11:18:28 (559357): Guest Log: 2025-11-27 18:18:25,297 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-27 11:18:28 (559357): Guest Log: 2025-11-27 18:18:25,600 [wrapper] ==== pilot stdout END ====
2025-11-27 11:18:28 (559357): Guest Log: 2025-11-27 18:18:25,613 [wrapper] ==== wrapper stdout RESUME ====
2025-11-27 11:18:28 (559357): Guest Log: 2025-11-27 18:18:25,624 [wrapper] pilotpid: 6095
2025-11-27 11:18:28 (559357): Guest Log: 2025-11-27 18:18:25,638 [wrapper] Pilot exit status: 0
2025-11-27 11:18:28 (559357): Guest Log: 2025-11-27 18:18:25,694 [wrapper] pandaids: 6895348410
2025-11-27 11:18:28 (559357): Guest Log: 2025-11-27 18:18:25,776 [wrapper] cleanup supervisor_pilot 25645 6096
2025-11-27 11:18:28 (559357): Guest Log: 2025-11-27 18:18:25,790 [wrapper] Test setup, not cleaning
2025-11-27 11:18:28 (559357): Guest Log: 2025-11-27 18:18:25,802 [wrapper] apfmon messages muted
2025-11-27 11:18:28 (559357): Guest Log: 2025-11-27 18:18:25,813 [wrapper] ==== wrapper stdout END ====
2025-11-27 11:18:28 (559357): Guest Log: 2025-11-27 18:18:25,825 [wrapper] ==== wrapper stderr END ====
2025-11-27 11:18:28 (559357): Guest Log:  *** Error codes and diagnostics ***
2025-11-27 11:18:28 (559357): Guest Log:     "exeErrorCode": 0,
2025-11-27 11:18:28 (559357): Guest Log:     "exeErrorDiag": "",
2025-11-27 11:18:28 (559357): Guest Log:     "pilotErrorCode": 0,
2025-11-27 11:18:28 (559357): Guest Log:     "pilotErrorDiag": "",
2025-11-27 11:18:28 (559357): Guest Log:  *** Listing of results directory ***
2025-11-27 11:18:28 (559357): Guest Log: total 939616
2025-11-27 11:18:28 (559357): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 22 19:25 pilot3.tar.gz
2025-11-27 11:18:28 (559357): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 22 19:44 queuedata.json
2025-11-27 11:18:28 (559357): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 22 19:45 runpilot2-wrapper.sh
2025-11-27 11:18:28 (559357): Guest Log: -rw-r--r--. 1 atlas atlas      6205 Nov 26 18:10 init_data.xml
2025-11-27 11:18:28 (559357): Guest Log: -rw-r--r--. 1 atlas atlas    590102 Nov 26 18:10 input.tar.gz
2025-11-27 11:18:28 (559357): Guest Log: -rw-r--r--. 1 atlas atlas     15847 Nov 26 18:10 start_atlas.sh
2025-11-27 11:18:28 (559357): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 26 18:10 EVNT.47483658._000477.pool.root.1 -> /data/./ATLAS.root_0
2025-11-27 11:18:28 (559357): Guest Log: -rw-r--r--. 1 atlas atlas      2784 Nov 26 18:10 pandaJob.out
2025-11-27 11:18:28 (559357): Guest Log: -rw-------. 1 atlas atlas    991530 Nov 26 18:11 agis_schedconf.cvmfs.json
2025-11-27 11:18:28 (559357): Guest Log: drwx------. 5 atlas atlas      4096 Nov 26 18:11 pilot3
2025-11-27 11:18:28 (559357): Guest Log: -rw-------. 1 atlas atlas 931716821 Nov 27 18:16 HITS.47556137._004725.pool.root.1
2025-11-27 11:18:28 (559357): Guest Log: -rw-------. 1 atlas atlas      1046 Nov 27 18:16 memory_monitor_summary.json
2025-11-27 11:18:28 (559357): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 27 18:16 agis_ddmendpoints.agis.ALL.json
2025-11-27 11:18:28 (559357): Guest Log: -rw-------. 1 atlas atlas   2474038 Nov 27 18:16 log.47556137._004725.job.log.tgz.1
2025-11-27 11:18:28 (559357): Guest Log: -rw-------. 1 atlas atlas        95 Nov 27 18:17 pilot_heartbeat.json
2025-11-27 11:18:28 (559357): Guest Log: -rw-------. 1 atlas atlas      8661 Nov 27 18:17 heartbeat.json
2025-11-27 11:18:28 (559357): Guest Log: -rw-------. 1 atlas atlas      4805 Nov 27 18:18 pilotlog.txt
2025-11-27 11:18:28 (559357): Guest Log: -rw-------. 1 atlas atlas  10825865 Nov 27 18:18 log.47556137._004725.job.log.1
2025-11-27 11:18:28 (559357): Guest Log: -rw-------. 1 atlas atlas       353 Nov 27 18:18 output.list
2025-11-27 11:18:28 (559357): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 27 18:18 runtime_log
2025-11-27 11:18:28 (559357): Guest Log: -rw-------. 1 atlas atlas  13322240 Nov 27 18:18 result.tar.gz
2025-11-27 11:18:28 (559357): Guest Log: -rw-------. 1 atlas atlas       670 Nov 27 18:18 z30MDmhi8g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmFMKKDmoUbmAo.diag
2025-11-27 11:18:28 (559357): Guest Log: -rw-r--r--. 1 atlas atlas      8765 Nov 27 18:18 runtime_log.err
2025-11-27 11:18:28 (559357): Guest Log: Looking for outputfile HITS.47556137._004725.pool.root.1
2025-11-27 11:18:28 (559357): Guest Log: HITS file was successfully produced
2025-11-27 11:18:28 (559357): Guest Log: -rw-------. 1 atlas atlas 931716821 Nov 27 18:16 /home/atlas/RunAtlas/HITS.47556137._004725.pool.root.1
2025-11-27 11:18:29 (559357): Guest Log: Successfully finished the ATLAS job!
2025-11-27 11:18:29 (559357): Guest Log: Copying the results back to the shared directory!
2025-11-27 11:18:29 (559357): Guest Log:  *** Contents of shared directory: ***
2025-11-27 11:18:29 (559357): Guest Log: total 413664
2025-11-27 11:18:29 (559357): Guest Log: -rw-r--r--. 1 root root 409643552 Nov 26 18:08 ATLAS.root_0
2025-11-27 11:18:29 (559357): Guest Log: -rw-r--r--. 1 root root      6205 Nov 26 18:08 init_data.xml
2025-11-27 11:18:29 (559357): Guest Log: -rw-r--r--. 1 root root    590102 Nov 26 18:08 input.tar.gz
2025-11-27 11:18:29 (559357): Guest Log: -rw-r--r--. 1 root root  13322240 Nov 27 18:18 result.tar.gz
2025-11-27 11:18:29 (559357): Guest Log: -rw-r--r--. 1 root root     15847 Nov 26 18:08 start_atlas.sh
2025-11-27 11:18:29 (559357): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-27 11:18:29 (559357): VM Completion File Detected.
2025-11-27 11:18:29 (559357): Powering off VM.
2025-11-27 11:18:30 (559357): Successfully stopped VM.
2025-11-27 11:18:30 (559357): Deregistering VM. (boinc_d7dcf58f1a986002, slot#0)
2025-11-27 11:18:30 (559357): Removing network bandwidth throttle group from VM.
2025-11-27 11:18:30 (559357): Removing VM from VirtualBox.
2025-11-27 11:18:35 (559357): called boinc_finish(0)

</stderr_txt>
]]>

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