Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:49 (14335): wrapper (7.7.26015): starting
00:03:49 (14335): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 00:03:49] Arguments: --nthreads 12
[2025-11-24 00:03:49] Threads: 12
[2025-11-24 00:03:49] Checking for CVMFS
[2025-11-24 00:03:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:03:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:03:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:03:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:03:52] 2.13.2.0 7646 29586 168284 153233 0 327 27129673 39288832 8689 16776704 0 21284068 99.553 22570807 36840 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 00:03:52] CVMFS is ok
[2025-11-24 00:03:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:03:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:03:52] Further information can be found at the LHC@home message board.
[2025-11-24 00:03:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:03:52] Checking for apptainer binary...
[2025-11-24 00:03:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:03:52] Running /usr/bin/apptainer --version
[2025-11-24 00:03:53] apptainer version 1.4.4-1.el9
[2025-11-24 00:03:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:03:54] c-210-2.aglt2.org
[2025-11-24 00:03:54] apptainer works
[2025-11-24 00:03:54] Set ATHENA_PROC_NUMBER=12
[2025-11-24 00:03:54] Set ATHENA_CORE_NUMBER=12
[2025-11-24 00:03:54] Starting ATLAS job with PandaID=6895338364
[2025-11-24 00:03:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 16:10:57]  *** The last 200 lines of the pilot log: ***
[2025-11-25 16:10:57] 2025-11-25 21:10:10,768 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 16:10:57] 2025-11-25 21:10:12,594 | INFO     | time since job start (144267s) is within the limit (172800.0s)
[2025-11-25 16:10:57] 2025-11-25 21:10:13,273 | INFO     | monitor loop #7887: job 0:6895338364 is in state 'finished'
[2025-11-25 16:10:57] 2025-11-25 21:10:13,278 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 16:10:57] 2025-11-25 21:10:14,604 | INFO     | time since job start (144269s) is within the limit (172800.0s)
[2025-11-25 16:10:57] 2025-11-25 21:10:15,783 | INFO     | monitor loop #7888: job 0:6895338364 is in state 'finished'
[2025-11-25 16:10:57] 2025-11-25 21:10:15,784 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 16:10:57] 2025-11-25 21:10:16,612 | INFO     | time since job start (144271s) is within the limit (172800.0s)
[2025-11-25 16:10:57] 2025-11-25 21:10:18,015 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 16:10:57] 2025-11-25 21:10:18,063 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.764475
[2025-11-25 16:10:57] 2025-11-25 21:10:18,076 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895338364/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 16:10:57] 2025-11-25 21:10:18,083 | INFO     | extracted standard info from prmon json
[2025-11-25 16:10:57] 2025-11-25 21:10:18,083 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 16:10:57] 2025-11-25 21:10:18,083 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 16:10:57] 2025-11-25 21:10:18,175 | INFO     | fitting pss+swap vs Time
[2025-11-25 16:10:57] 2025-11-25 21:10:18,179 | INFO     | sum of square deviations: 4082171032342.517
[2025-11-25 16:10:57] 2025-11-25 21:10:18,355 | INFO     | monitor loop #7889: job 0:6895338364 is in state 'finished'
[2025-11-25 16:10:57] 2025-11-25 21:10:18,357 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 16:10:57] 2025-11-25 21:10:18,625 | INFO     | time since job start (144273s) is within the limit (172800.0s)
[2025-11-25 16:10:57] 2025-11-25 21:10:18,952 | INFO     | sum of deviations: 20459306817525.26
[2025-11-25 16:10:57] 2025-11-25 21:10:18,952 | INFO     | mean x: 1764032984.604405
[2025-11-25 16:10:57] 2025-11-25 21:10:18,953 | INFO     | mean y: 3513854.205844981
[2025-11-25 16:10:57] 2025-11-25 21:10:18,953 | INFO     | intersect: -8837588535.26114
[2025-11-25 16:10:57] 2025-11-25 21:10:18,995 | INFO     | chi2: 36.23488164802668
[2025-11-25 16:10:57] 2025-11-25 21:10:19,041 | INFO     | sum of square deviations: 4056300217998.5205
[2025-11-25 16:10:57] 2025-11-25 21:10:20,027 | INFO     | sum of deviations: 21521153646770.758
[2025-11-25 16:10:57] 2025-11-25 21:10:20,028 | INFO     | mean x: 1764032832.1099322
[2025-11-25 16:10:57] 2025-11-25 21:10:20,028 | INFO     | mean y: 3520112.3098471984
[2025-11-25 16:10:57] 2025-11-25 21:10:20,028 | INFO     | intersect: -9355753012.823483
[2025-11-25 16:10:57] 2025-11-25 21:10:20,053 | INFO     | chi2: 32.357425330876744
[2025-11-25 16:10:57] 2025-11-25 21:10:20,054 | INFO     | current chi2=32.357425330876744 (change=10.700894113065491 %)
[2025-11-25 16:10:57] 2025-11-25 21:10:20,054 | INFO     | right removable region: 2355
[2025-11-25 16:10:57] 2025-11-25 21:10:20,086 | INFO     | sum of square deviations: 4056274858665.9917
[2025-11-25 16:10:57] 2025-11-25 21:10:20,649 | INFO     | sum of deviations: 19250314169162.836
[2025-11-25 16:10:57] 2025-11-25 21:10:20,649 | INFO     | mean x: 1764033137.1735992
[2025-11-25 16:10:57] 2025-11-25 21:10:20,649 | INFO     | mean y: 3520976.792444822
[2025-11-25 16:10:57] 2025-11-25 21:10:20,649 | INFO     | intersect: -8368247031.693477
[2025-11-25 16:10:57] 2025-11-25 21:10:20,657 | INFO     | chi2: 31.666157175452003
[2025-11-25 16:10:57] 2025-11-25 21:10:20,657 | INFO     | current chi2=31.666157175452003 (change=12.608636387869876 %)
[2025-11-25 16:10:57] 2025-11-25 21:10:20,657 | INFO     | left removable region: 10
[2025-11-25 16:10:57] 2025-11-25 21:10:20,665 | INFO     | sum of square deviations: 3999719653845.054
[2025-11-25 16:10:57] 2025-11-25 21:10:20,714 | INFO     | time since job start (144275s) is within the limit (172800.0s)
[2025-11-25 16:10:57] 2025-11-25 21:10:20,715 | INFO     | 144291s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-25 16:10:57] 2025-11-25 21:10:20,935 | INFO     | monitor loop #7890: job 0:6895338364 is in state 'finished'
[2025-11-25 16:10:57] 2025-11-25 21:10:20,936 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 16:10:57] 2025-11-25 21:10:20,961 | INFO     | sum of deviations: 19376139820226.887
[2025-11-25 16:10:57] 2025-11-25 21:10:20,962 | INFO     | mean x: 1764033106.7488272
[2025-11-25 16:10:57] 2025-11-25 21:10:20,962 | INFO     | mean y: 3535074.0507462686
[2025-11-25 16:10:57] 2025-11-25 21:10:20,962 | INFO     | intersect: -8542101891.03406
[2025-11-25 16:10:57] 2025-11-25 21:10:20,970 | INFO     | chi2: 23.273558318850625
[2025-11-25 16:10:57] 2025-11-25 21:10:20,970 | INFO     | current memory leak: 4.84 B/s (using 2345 data points, chi2=23.27)
[2025-11-25 16:10:57] 2025-11-25 21:10:20,978 | INFO     | could have reported an average CPU frequency of 2599 MHz (81 samples)
[2025-11-25 16:10:57] 2025-11-25 21:10:20,978 | INFO     | ..............................
[2025-11-25 16:10:57] 2025-11-25 21:10:20,978 | INFO     | . Timing measurements:
[2025-11-25 16:10:57] 2025-11-25 21:10:20,978 | INFO     | . get job = 2 s
[2025-11-25 16:10:57] 2025-11-25 21:10:20,979 | INFO     | . initial setup = 14 s
[2025-11-25 16:10:57] 2025-11-25 21:10:20,979 | INFO     | . payload setup = 72 s
[2025-11-25 16:10:57] 2025-11-25 21:10:20,979 | INFO     | . stage-in = 0 s
[2025-11-25 16:10:57] 2025-11-25 21:10:20,979 | INFO     | . payload execution = 144030 s
[2025-11-25 16:10:57] 2025-11-25 21:10:20,979 | INFO     | . stage-out = 10 s
[2025-11-25 16:10:57] 2025-11-25 21:10:20,983 | INFO     | . log creation = 5 s
[2025-11-25 16:10:57] 2025-11-25 21:10:20,984 | INFO     | ..............................
[2025-11-25 16:10:57] 2025-11-25 21:10:21,430 | INFO     | 
[2025-11-25 16:10:57] 2025-11-25 21:10:21,431 | INFO     | job summary report
[2025-11-25 16:10:57] 2025-11-25 21:10:21,431 | INFO     | --------------------------------------------------
[2025-11-25 16:10:57] 2025-11-25 21:10:21,431 | INFO     | PanDA job id: 6895338364
[2025-11-25 16:10:57] 2025-11-25 21:10:21,431 | INFO     | task id: 47556137
[2025-11-25 16:10:57] 2025-11-25 21:10:21,431 | INFO     | errors: (none)
[2025-11-25 16:10:57] 2025-11-25 21:10:21,431 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 16:10:57] 2025-11-25 21:10:21,431 | INFO     | pilot state: finished 
[2025-11-25 16:10:57] 2025-11-25 21:10:21,431 | INFO     | transexitcode: 0
[2025-11-25 16:10:57] 2025-11-25 21:10:21,432 | INFO     | exeerrorcode: 0
[2025-11-25 16:10:57] 2025-11-25 21:10:21,432 | INFO     | exeerrordiag: 
[2025-11-25 16:10:57] 2025-11-25 21:10:21,432 | INFO     | exitcode: 0
[2025-11-25 16:10:57] 2025-11-25 21:10:21,432 | INFO     | exitmsg: OK
[2025-11-25 16:10:57] 2025-11-25 21:10:21,432 | INFO     | cpuconsumptiontime: 307612 s
[2025-11-25 16:10:57] 2025-11-25 21:10:21,432 | INFO     | nevents: 1000
[2025-11-25 16:10:57] 2025-11-25 21:10:21,432 | INFO     | neventsw: 0
[2025-11-25 16:10:57] 2025-11-25 21:10:21,432 | INFO     | pid: 28084
[2025-11-25 16:10:57] 2025-11-25 21:10:21,432 | INFO     | pgrp: 28084
[2025-11-25 16:10:57] 2025-11-25 21:10:21,433 | INFO     | corecount: 12
[2025-11-25 16:10:57] 2025-11-25 21:10:21,433 | INFO     | event service: False
[2025-11-25 16:10:57] 2025-11-25 21:10:21,433 | INFO     | sizes: {0: 2297927, 2: 2298612, 3: 2298640, 4: 2298839, 15: 2298839, 26: 2298867, 38: 2299023, 50: 2299051, 51: 2299341, 61: 2299369, 144107: 2389310, 144118: 2399
[2025-11-25 16:10:57] 2025-11-25 21:10:21,433 | INFO     | --------------------------------------------------
[2025-11-25 16:10:57] 2025-11-25 21:10:21,433 | INFO     | 
[2025-11-25 16:10:57] 2025-11-25 21:10:21,433 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 16:10:57] 2025-11-25 21:10:21,549 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 16:10:57] 2025-11-25 21:10:21,550 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 16:10:57] 2025-11-25 21:10:21,550 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 16:10:57] 2025-11-25 21:10:21,550 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 16:10:57] 2025-11-25 21:10:21,550 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 16:10:57] 2025-11-25 21:10:21,550 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 16:10:57] 2025-11-25 21:10:21,550 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 16:10:57] 2025-11-25 21:10:21,551 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 16:10:57] 2025-11-25 21:10:21,551 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 16:10:57] 2025-11-25 21:10:21,551 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 16:10:57] 2025-11-25 21:10:21,551 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 16:10:57] 2025-11-25 21:10:21,551 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 16:10:57] 2025-11-25 21:10:21,551 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 16:10:57] 2025-11-25 21:10:21,551 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 16:10:57] 2025-11-25 21:10:21,551 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 16:10:57] 2025-11-25 21:10:21,551 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 16:10:57] 2025-11-25 21:10:21,552 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 16:10:57] 2025-11-25 21:10:21,552 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 16:10:57] 2025-11-25 21:10:21,552 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 16:10:57] 2025-11-25 21:10:21,552 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 16:10:57] 2025-11-25 21:10:21,560 | INFO     | job 6895338364 has completed (purged errors)
[2025-11-25 16:10:57] 2025-11-25 21:10:21,561 | INFO     | overall cleanup function is called
[2025-11-25 16:10:57] 2025-11-25 21:10:22,616 | INFO     | --- collectZombieJob: --- 10, [28084]
[2025-11-25 16:10:57] 2025-11-25 21:10:22,616 | INFO     | zombie collector waiting for pid 28084
[2025-11-25 16:10:57] 2025-11-25 21:10:22,617 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 16:10:57] 2025-11-25 21:10:22,617 | INFO     | collected zombie processes
[2025-11-25 16:10:57] 2025-11-25 21:10:22,617 | INFO     | will attempt to kill all subprocesses of pid=28084
[2025-11-25 16:10:57] 2025-11-25 21:10:24,946 | INFO     | process IDs to be killed: [28084] (in reverse order)
[2025-11-25 16:10:57] 2025-11-25 21:10:25,318 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 16:10:57] 2025-11-25 21:10:25,319 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 16:10:57] 2025-11-25 21:10:25,337 | INFO     | did not find any defunct processes belonging to 28084
[2025-11-25 16:10:57] 2025-11-25 21:10:25,353 | INFO     | did not find any defunct processes belonging to 28084
[2025-11-25 16:10:57] 2025-11-25 21:10:25,363 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 16:10:57] 2025-11-25 21:10:25,364 | INFO     | ready for new job
[2025-11-25 16:10:57] 2025-11-25 21:10:25,364 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 16:10:57] 2025-11-25 21:10:25,374 | INFO     | ***************************************
[2025-11-25 16:10:57] 2025-11-25 21:10:25,374 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 16:10:57] 2025-11-25 21:10:25,374 | INFO     | ***************************************
[2025-11-25 16:10:57] 2025-11-25 21:10:25,374 | INFO     | 
[2025-11-25 16:10:57] 2025-11-25 21:10:25,376 | INFO     | architecture information:
[2025-11-25 16:10:57] 2025-11-25 21:10:25,377 | INFO     | executing command: cat /etc/os-release
[2025-11-25 16:10:57] 2025-11-25 21:10:25,422 | INFO     | cat /etc/os-release:
[2025-11-25 16:10:57] NAME="CentOS Linux"
[2025-11-25 16:10:57] VERSION="7 (Core)"
[2025-11-25 16:10:57] ID="centos"
[2025-11-25 16:10:57] ID_LIKE="rhel fedora"
[2025-11-25 16:10:57] VERSION_ID="7"
[2025-11-25 16:10:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 16:10:57] ANSI_COLOR="0;31"
[2025-11-25 16:10:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 16:10:57] HOME_URL="https://www.centos.org/"
[2025-11-25 16:10:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 16:10:57] 
[2025-11-25 16:10:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 16:10:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 16:10:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 16:10:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 16:10:57] 
[2025-11-25 16:10:57] 2025-11-25 21:10:25,422 | INFO     | ***************************************
[2025-11-25 16:10:57] 2025-11-25 21:10:25,925 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 16:10:57] 2025-11-25 21:10:26,002 | INFO     | sufficient remaining disk space (50240421888 B)
[2025-11-25 16:10:57] 2025-11-25 21:10:26,002 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 16:10:57] 2025-11-25 21:10:26,002 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 16:10:57] 2025-11-25 21:10:26,003 | INFO     | update_server=False
[2025-11-25 16:10:57] 2025-11-25 21:10:26,003 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 16:10:57] 2025-11-25 21:10:26,040 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 16:10:57] 2025-11-25 21:10:26,041 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 16:10:57] 2025-11-25 21:10:26,041 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 16:10:57] 2025-11-25 21:10:26,041 | INFO     | will abort loop
[2025-11-25 16:10:57] 2025-11-25 21:10:26,063 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 16:10:57] 2025-11-25 21:10:26,189 | INFO     | all data control threads have been joined
[2025-11-25 16:10:57] 2025-11-25 21:10:26,269 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 16:10:57] 2025-11-25 21:10:26,290 | INFO     | all payload control threads have been joined
[2025-11-25 16:10:57] 2025-11-25 21:10:26,524 | INFO     | all job control threads have been joined
[2025-11-25 16:10:57] 2025-11-25 21:10:27,008 | INFO     | [job] retrieve thread has finished
[2025-11-25 16:10:57] 2025-11-25 21:10:27,046 | INFO     | [job] job monitor thread has finished
[2025-11-25 16:10:57] 2025-11-25 21:10:27,052 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 16:10:57] 2025-11-25 21:10:27,195 | INFO     | [data] control thread has finished
[2025-11-25 16:10:57] 2025-11-25 21:10:27,275 | INFO     | [job] queue monitor thread has finished
[2025-11-25 16:10:57] 2025-11-25 21:10:27,290 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 16:10:57] 2025-11-25 21:10:27,299 | INFO     | [payload] control thread has finished
[2025-11-25 16:10:57] 2025-11-25 21:10:27,395 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 16:10:57] 2025-11-25 21:10:27,447 | INFO     | [payload] validate_post thread has finished
[2025-11-25 16:10:57] 2025-11-25 21:10:27,530 | INFO     | [job] control thread has finished
[2025-11-25 16:10:57] 2025-11-25 21:10:27,625 | INFO     | [data] copytool_in thread has finished
[2025-11-25 16:10:57] 2025-11-25 21:10:27,960 | INFO     | [payload] failed_post thread has finished
[2025-11-25 16:10:57] 2025-11-25 21:10:28,067 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 16:10:57] 2025-11-25 21:10:28,074 | INFO     | [data] copytool_out thread has finished
[2025-11-25 16:10:57] 2025-11-25 21:10:28,120 | INFO     | [job] validate thread has finished
[2025-11-25 16:10:57] 2025-11-25 21:10:28,435 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 16:10:57] 2025-11-25 21:10:31,061 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 16:10:57] 2025-11-25 21:10:37,372 | INFO     | [monitor] cgroup control has ended
[2025-11-25 16:10:57] 2025-11-25 21:10:38,243 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140243255211840)>', '<ExcThread(monitor, started 140242594019072)>']
[2025-11-25 16:10:57] 2025-11-25 21:10:43,269 | INFO     | all workflow threads have been joined
[2025-11-25 16:10:57] 2025-11-25 21:10:43,270 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 16:10:57] 2025-11-25 21:10:43,270 | INFO     | traces error code: 0
[2025-11-25 16:10:57] 2025-11-25 21:10:43,270 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 16:10:57] 2025-11-25 21:10:55,527 | INFO     | PID=19627 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 16:10:57] 2025-11-25 21:10:55,529 | INFO     | .. there are 8 such processes running
[2025-11-25 16:10:57] 2025-11-25 21:10:55,540 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 16:10:57] 2025-11-25 21:10:55,541 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 16:10:57] 2025-11-25 21:10:55,541 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 16:10:57] 2025-11-25 21:10:55,541 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 16:10:57] 2025-11-25 21:10:55,541 | INFO     | [monitor] control thread has ended
[2025-11-25 16:10:57] 2025-11-25 21:10:56,057 [wrapper] ==== pilot stdout END ====
[2025-11-25 16:10:57] 2025-11-25 21:10:56,095 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 16:10:57] 2025-11-25 21:10:56,114 [wrapper] pilotpid: 19627
[2025-11-25 16:10:57] 2025-11-25 21:10:56,156 [wrapper] Pilot exit status: 0
[2025-11-25 16:10:57] 2025-11-25 21:10:56,261 [wrapper] pandaids: 6895338364
[2025-11-25 16:10:57] 2025-11-25 21:10:56,439 [wrapper] cleanup supervisor_pilot 3548073 19628
[2025-11-25 16:10:57] 2025-11-25 21:10:56,452 [wrapper] Test setup, not cleaning
[2025-11-25 16:10:57] 2025-11-25 21:10:56,474 [wrapper] apfmon messages muted
[2025-11-25 16:10:57] 2025-11-25 21:10:56,491 [wrapper] ==== wrapper stdout END ====
[2025-11-25 16:10:57] 2025-11-25 21:10:56,520 [wrapper] ==== wrapper stderr END ====
[2025-11-25 16:10:57]  *** Error codes and diagnostics ***
[2025-11-25 16:10:57]     "exeErrorCode": 0,
[2025-11-25 16:10:57]     "exeErrorDiag": "",
[2025-11-25 16:10:57]     "pilotErrorCode": 0,
[2025-11-25 16:10:57]     "pilotErrorDiag": "",
[2025-11-25 16:10:57]  *** Listing of results directory ***
[2025-11-25 16:10:57] total 1348312
[2025-11-25 16:10:57] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 03:29 pilot3.tar.gz
[2025-11-25 16:10:57] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 03:38 queuedata.json
[2025-11-25 16:10:57] -rwx------. 1 boincer umatlas     36292 Nov 22 03:39 runpilot2-wrapper.sh
[2025-11-25 16:10:57] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 16:10:57] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:03 run_atlas
[2025-11-25 16:10:57] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:03 job.xml
[2025-11-25 16:10:57] -rw-r--r--. 2 boincer umatlas 413097382 Nov 24 00:03 EVNT.47483658._000320.pool.root.1
[2025-11-25 16:10:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:03 start_atlas.sh
[2025-11-25 16:10:57] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:03 shared
[2025-11-25 16:10:57] -rw-r--r--. 2 boincer umatlas    590101 Nov 24 00:03 input.tar.gz
[2025-11-25 16:10:57] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:03 boinc_lockfile
[2025-11-25 16:10:57] -rw-r--r--. 1 boincer umatlas      2784 Nov 24 00:03 pandaJob.out
[2025-11-25 16:10:57] -rw-------. 1 boincer umatlas        57 Nov 24 00:03 setup.sh.local
[2025-11-25 16:10:57] -rw-------. 1 boincer umatlas    989786 Nov 24 00:05 agis_schedconf.cvmfs.json
[2025-11-25 16:10:57] drwx------. 5 boincer umatlas      4096 Nov 24 00:05 pilot3
[2025-11-25 16:10:57] -rw-r--r--. 1 boincer umatlas       533 Nov 25 15:31 boinc_task_state.xml
[2025-11-25 16:10:57] -rw-r--r--. 1 boincer umatlas      6657 Nov 25 16:01 init_data.xml
[2025-11-25 16:10:57] -rw-------. 1 boincer umatlas 922042807 Nov 25 16:08 HITS.47556137._003169.pool.root.1
[2025-11-25 16:10:57] -rw-------. 1 boincer umatlas      1064 Nov 25 16:09 memory_monitor_summary.json
[2025-11-25 16:10:57] -rw-------. 1 boincer umatlas   1516240 Nov 25 16:09 agis_ddmendpoints.agis.ALL.json
[2025-11-25 16:10:57] -rw-------. 1 boincer umatlas   3524689 Nov 25 16:09 log.47556137._003169.job.log.tgz.1
[2025-11-25 16:10:57] -rw-------. 1 boincer umatlas      8635 Nov 25 16:10 heartbeat.json
[2025-11-25 16:10:57] -rw-r--r--. 1 boincer umatlas        29 Nov 25 16:10 wrapper_checkpoint.txt
[2025-11-25 16:10:57] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 16:10 boinc_mmap_file
[2025-11-25 16:10:57] -rw-------. 1 boincer umatlas        95 Nov 25 16:10 pilot_heartbeat.json
[2025-11-25 16:10:57] -rw-------. 1 boincer umatlas       820 Nov 25 16:10 pilotlog.txt
[2025-11-25 16:10:57] -rw-------. 1 boincer umatlas  17282925 Nov 25 16:10 log.47556137._003169.job.log.1
[2025-11-25 16:10:57] -rw-------. 1 boincer umatlas       353 Nov 25 16:10 output.list
[2025-11-25 16:10:57] -rw-r--r--. 1 boincer umatlas       620 Nov 25 16:10 runtime_log
[2025-11-25 16:10:57] -rw-------. 1 boincer umatlas  20828160 Nov 25 16:10 result.tar.gz
[2025-11-25 16:10:57] -rw-------. 1 boincer umatlas       662 Nov 25 16:10 VRYKDmeKyg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmY4JKDmub9MXo.diag
[2025-11-25 16:10:57] -rw-r--r--. 1 boincer umatlas      9341 Nov 25 16:10 runtime_log.err
[2025-11-25 16:10:57] -rw-r--r--. 1 boincer umatlas     21806 Nov 25 16:10 stderr.txt
[2025-11-25 16:10:57] HITS file was successfully produced:
[2025-11-25 16:10:57] -rw-------. 1 boincer umatlas 922042807 Nov 25 16:08 shared/HITS.pool.root.1
[2025-11-25 16:10:57]  *** Contents of shared directory: ***
[2025-11-25 16:10:57] total 1324796
[2025-11-25 16:10:57] -rw-r--r--. 2 boincer umatlas 413097382 Nov 24 00:03 ATLAS.root_0
[2025-11-25 16:10:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:03 start_atlas.sh
[2025-11-25 16:10:57] -rw-r--r--. 2 boincer umatlas    590101 Nov 24 00:03 input.tar.gz
[2025-11-25 16:10:57] -rw-------. 1 boincer umatlas 922042807 Nov 25 16:08 HITS.pool.root.1
[2025-11-25 16:10:57] -rw-------. 1 boincer umatlas  20828160 Nov 25 16:10 result.tar.gz
16:10:58 (14335): run_atlas exited; CPU time 309700.986367
16:10:58 (14335): called boinc_finish(0)

</stderr_txt>
]]>

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