Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:04:48 (1436997): wrapper (7.7.26015): starting
00:04:48 (1436997): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 00:04:48] Arguments: --nthreads 3
[2025-11-26 00:04:48] Threads: 3
[2025-11-26 00:04:48] Checking for CVMFS
[2025-11-26 00:04:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:04:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:04:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:04:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:04:48] 2.9.2.0 46827 10478 89900 153300 3 81 34317267 36864000 0 130560 0 3885601 99.929 541223 7502 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 00:04:48] CVMFS is ok
[2025-11-26 00:04:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:04:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:04:48] Further information can be found at the LHC@home message board.
[2025-11-26 00:04:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:04:48] Checking for apptainer binary...
[2025-11-26 00:04:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:04:48] Running /usr/bin/apptainer --version
[2025-11-26 00:04:48] apptainer version 1.4.1-1.1
[2025-11-26 00:04:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:04:48] magicA252
[2025-11-26 00:04:48] apptainer works
[2025-11-26 00:04:48] Set ATHENA_PROC_NUMBER=3
[2025-11-26 00:04:48] Set ATHENA_CORE_NUMBER=3
[2025-11-26 00:04:48] Starting ATLAS job with PandaID=6895337208
[2025-11-26 00:04:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 08:02:32]  *** The last 200 lines of the pilot log: ***
[2025-11-26 08:02:32] ID_LIKE="rhel fedora"
[2025-11-26 08:02:32] VERSION_ID="7"
[2025-11-26 08:02:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 08:02:32] ANSI_COLOR="0;31"
[2025-11-26 08:02:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 08:02:32] HOME_URL="https://www.centos.org/"
[2025-11-26 08:02:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 08:02:32] 
[2025-11-26 08:02:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 08:02:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 08:02:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 08:02:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 08:02:32] 
[2025-11-26 08:02:32] 2025-11-26 07:01:51,047 | INFO     | ***************************************
[2025-11-26 08:02:32] 2025-11-26 07:01:51,550 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 08:02:32] 2025-11-26 07:01:51,563 | INFO     | sufficient remaining disk space (367103311872 B)
[2025-11-26 08:02:32] 2025-11-26 07:01:51,563 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 08:02:32] 2025-11-26 07:01:51,564 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 08:02:32] 2025-11-26 07:01:51,564 | INFO     | update_server=False
[2025-11-26 08:02:32] 2025-11-26 07:01:51,564 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 08:02:32] 2025-11-26 07:01:51,564 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:02:32] 2025-11-26 07:01:51,564 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 08:02:32] 2025-11-26 07:01:51,737 | INFO     | all data control threads have been joined
[2025-11-26 08:02:32] 2025-11-26 07:01:51,936 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 08:02:32] 2025-11-26 07:01:51,937 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 08:02:32] 2025-11-26 07:01:51,937 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:02:32] 2025-11-26 07:01:51,937 | INFO     | will abort loop
[2025-11-26 08:02:32] 2025-11-26 07:01:51,985 | INFO     | all job control threads have been joined
[2025-11-26 08:02:32] 2025-11-26 07:01:52,104 | INFO     | all payload control threads have been joined
[2025-11-26 08:02:32] 2025-11-26 07:01:52,569 | INFO     | [job] queue monitor thread has finished
[2025-11-26 08:02:32] 2025-11-26 07:01:52,570 | INFO     | [job] retrieve thread has finished
[2025-11-26 08:02:32] 2025-11-26 07:01:52,742 | INFO     | [data] control thread has finished
[2025-11-26 08:02:32] 2025-11-26 07:01:52,863 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 08:02:32] 2025-11-26 07:01:52,942 | INFO     | [job] job monitor thread has finished
[2025-11-26 08:02:32] 2025-11-26 07:01:52,966 | INFO     | [payload] validate_post thread has finished
[2025-11-26 08:02:32] 2025-11-26 07:01:52,991 | INFO     | [job] control thread has finished
[2025-11-26 08:02:32] 2025-11-26 07:01:53,110 | INFO     | [payload] control thread has finished
[2025-11-26 08:02:32] 2025-11-26 07:01:53,128 | INFO     | [payload] failed_post thread has finished
[2025-11-26 08:02:32] 2025-11-26 07:01:53,129 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 08:02:32] 2025-11-26 07:01:53,159 | INFO     | [job] validate thread has finished
[2025-11-26 08:02:32] 2025-11-26 07:01:53,171 | INFO     | [data] copytool_in thread has finished
[2025-11-26 08:02:32] 2025-11-26 07:01:53,495 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 08:02:32] 2025-11-26 07:01:53,567 | INFO     | [data] copytool_out thread has finished
[2025-11-26 08:02:32] 2025-11-26 07:01:53,841 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 08:02:32] 2025-11-26 07:01:54,726 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 08:02:32] 2025-11-26 07:01:58,733 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 08:02:32] 2025-11-26 07:02:22,565 | INFO     | PID=1440723 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 08:02:32] 2025-11-26 07:02:22,565 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 08:02:32] 2025-11-26 07:02:22,566 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 08:02:32] 2025-11-26 07:02:22,566 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 08:02:32] 2025-11-26 07:02:27,460 | INFO     | [monitor] cgroup control has ended
[2025-11-26 08:02:32] 2025-11-26 07:02:27,507 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139949428635456)>', '<ExcThread(monitor, started 139948917237504)>']
[2025-11-26 08:02:32] 2025-11-26 07:02:27,592 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 08:02:32] 2025-11-26 07:02:27,593 | INFO     | [monitor] control thread has ended
[2025-11-26 08:02:32] 2025-11-26 07:02:32,532 | INFO     | all workflow threads have been joined
[2025-11-26 08:02:32] 2025-11-26 07:02:32,533 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 08:02:32] 2025-11-26 07:02:32,533 | INFO     | traces error code: 0
[2025-11-26 08:02:32] 2025-11-26 07:02:32,533 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 08:02:32] 2025-11-26 07:02:32,582 [wrapper] ==== pilot stdout END ====
[2025-11-26 08:02:32] 2025-11-26 07:02:32,585 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 08:02:32] 2025-11-26 07:02:32,588 [wrapper] pilotpid: 1440723
[2025-11-26 08:02:32] 2025-11-26 07:02:32,590 [wrapper] Pilot exit status: 0
[2025-11-26 08:02:32] 2025-11-26 07:02:32,598 [wrapper] pandaids: 6895337208
[2025-11-26 08:02:32] 2025-11-26 07:02:32,615 [wrapper] cleanup supervisor_pilot 1497288 1440724
[2025-11-26 08:02:32] 2025-11-26 07:02:32,617 [wrapper] Test setup, not cleaning
[2025-11-26 08:02:32] 2025-11-26 07:02:32,620 [wrapper] apfmon messages muted
[2025-11-26 08:02:32] 2025-11-26 07:02:32,622 [wrapper] ==== wrapper stdout END ====
[2025-11-26 08:02:32] 2025-11-26 07:02:32,625 [wrapper] ==== wrapper stderr END ====
[2025-11-26 08:02:32]  *** Error codes and diagnostics ***
[2025-11-26 08:02:32]     "exeErrorCode": 0,
[2025-11-26 08:02:32]     "exeErrorDiag": "",
[2025-11-26 08:02:32]     "pilotErrorCode": 0,
[2025-11-26 08:02:32]     "pilotErrorDiag": "",
[2025-11-26 08:02:32]  *** Listing of results directory ***
[2025-11-26 08:02:32] total 1312476
[2025-11-26 08:02:32] -rw-r--r-- 1 boinc boinc    576529 Nov 22 06:57 pilot3.tar.gz
[2025-11-26 08:02:32] -rw-r--r-- 1 boinc boinc      5112 Nov 22 07:00 queuedata.json
[2025-11-26 08:02:32] -rwx------ 1 boinc boinc     36292 Nov 22 07:01 runpilot2-wrapper.sh
[2025-11-26 08:02:32] -rw-r--r-- 1 boinc boinc       100 Nov 26 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 08:02:32] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 00:04 run_atlas
[2025-11-26 08:02:32] -rw-r--r-- 1 boinc boinc       105 Nov 26 00:04 job.xml
[2025-11-26 08:02:32] -rw-r--r-- 2 boinc boinc 409068688 Nov 26 00:04 EVNT.47483658._000292.pool.root.1
[2025-11-26 08:02:32] -rw-r--r-- 2 boinc boinc    590101 Nov 26 00:04 input.tar.gz
[2025-11-26 08:02:32] -rw-r--r-- 2 boinc boinc     15847 Nov 26 00:04 start_atlas.sh
[2025-11-26 08:02:32] drwxrwx--x 2 boinc boinc      4096 Nov 26 00:04 shared
[2025-11-26 08:02:32] -rw-r--r-- 1 boinc boinc         0 Nov 26 00:04 boinc_setup_complete
[2025-11-26 08:02:32] -rw-r--r-- 1 boinc boinc      6449 Nov 26 00:04 init_data.xml
[2025-11-26 08:02:32] -rw-r--r-- 1 boinc boinc         0 Nov 26 00:04 boinc_lockfile
[2025-11-26 08:02:32] -rw-r--r-- 1 boinc boinc      2785 Nov 26 00:04 pandaJob.out
[2025-11-26 08:02:32] -rw------- 1 boinc boinc    991877 Nov 26 00:04 agis_schedconf.cvmfs.json
[2025-11-26 08:02:32] drwx------ 5 boinc boinc      4096 Nov 26 00:04 pilot3
[2025-11-26 08:02:32] -rw-r--r-- 1 boinc boinc       531 Nov 26 07:57 boinc_task_state.xml
[2025-11-26 08:02:32] -rw------- 1 boinc boinc 920599344 Nov 26 08:01 HITS.47556137._002886.pool.root.1
[2025-11-26 08:02:32] -rw------- 1 boinc boinc      1040 Nov 26 08:01 memory_monitor_summary.json
[2025-11-26 08:02:32] -rw------- 1 boinc boinc   1516240 Nov 26 08:01 agis_ddmendpoints.agis.ALL.json
[2025-11-26 08:02:32] -rw------- 1 boinc boinc   1166612 Nov 26 08:01 log.47556137._002886.job.log.tgz.1
[2025-11-26 08:02:32] -rw------- 1 boinc boinc      8564 Nov 26 08:01 heartbeat.json
[2025-11-26 08:02:32] -rw-r--r-- 1 boinc boinc        28 Nov 26 08:02 wrapper_checkpoint.txt
[2025-11-26 08:02:32] -rw-r--r-- 1 boinc boinc      8192 Nov 26 08:02 boinc_mmap_file
[2025-11-26 08:02:32] -rw------- 1 boinc boinc        95 Nov 26 08:02 pilot_heartbeat.json
[2025-11-26 08:02:32] -rw------- 1 boinc boinc      4938 Nov 26 08:02 pilotlog.txt
[2025-11-26 08:02:32] -rw------- 1 boinc boinc   4032620 Nov 26 08:02 log.47556137._002886.job.log.1
[2025-11-26 08:02:32] -rw------- 1 boinc boinc       353 Nov 26 08:02 output.list
[2025-11-26 08:02:32] -rw-r--r-- 1 boinc boinc       620 Nov 26 08:02 runtime_log
[2025-11-26 08:02:32] -rw------- 1 boinc boinc   5222400 Nov 26 08:02 result.tar.gz
[2025-11-26 08:02:32] -rw------- 1 boinc boinc       668 Nov 26 08:02 z8qLDmDsvg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmE1JKDmWmLpEm.diag
[2025-11-26 08:02:32] -rw-r--r-- 1 boinc boinc      8913 Nov 26 08:02 runtime_log.err
[2025-11-26 08:02:32] -rw-r--r-- 1 boinc boinc      8822 Nov 26 08:02 stderr.txt
[2025-11-26 08:02:32] HITS file was successfully produced:
[2025-11-26 08:02:32] -rw------- 1 boinc boinc 920599344 Nov 26 08:01 shared/HITS.pool.root.1
[2025-11-26 08:02:32]  *** Contents of shared directory: ***
[2025-11-26 08:02:32] total 1304212
[2025-11-26 08:02:32] -rw-r--r-- 2 boinc boinc 409068688 Nov 26 00:04 ATLAS.root_0
[2025-11-26 08:02:32] -rw-r--r-- 2 boinc boinc    590101 Nov 26 00:04 input.tar.gz
[2025-11-26 08:02:32] -rw-r--r-- 2 boinc boinc     15847 Nov 26 00:04 start_atlas.sh
[2025-11-26 08:02:32] -rw------- 1 boinc boinc 920599344 Nov 26 08:01 HITS.pool.root.1
[2025-11-26 08:02:32] -rw------- 1 boinc boinc   5222400 Nov 26 08:02 result.tar.gz
08:02:34 (1436997): run_atlas exited; CPU time 84396.803665
08:02:34 (1436997): called boinc_finish(0)

</stderr_txt>
]]>

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