Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:02:54 (1500225): wrapper (7.7.26015): starting
08:02:54 (1500225): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 08:02:54] Arguments: --nthreads 3
[2025-11-26 08:02:54] Threads: 3
[2025-11-26 08:02:54] Checking for CVMFS
[2025-11-26 08:02:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 08:02:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 08:02:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 08:02:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 08:02:54] 2.9.2.0 46827 10957 89260 153312 1 81 34411029 36864001 0 130560 0 4062007 99.931 557039 7631 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 08:02:54] CVMFS is ok
[2025-11-26 08:02:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 08:02:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 08:02:54] Further information can be found at the LHC@home message board.
[2025-11-26 08:02:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 08:02:54] Checking for apptainer binary...
[2025-11-26 08:02:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 08:02:54] Running /usr/bin/apptainer --version
[2025-11-26 08:02:54] apptainer version 1.4.1-1.1
[2025-11-26 08:02:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 08:02:54] magicA252
[2025-11-26 08:02:54] apptainer works
[2025-11-26 08:02:54] Set ATHENA_PROC_NUMBER=3
[2025-11-26 08:02:54] Set ATHENA_CORE_NUMBER=3
[2025-11-26 08:02:54] Starting ATLAS job with PandaID=6895337465
[2025-11-26 08:02:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 16:06:38]  *** The last 200 lines of the pilot log: ***
[2025-11-26 16:06:38] 2025-11-26 15:06:04,643 | INFO     | overall cleanup function is called
[2025-11-26 16:06:38] 2025-11-26 15:06:05,652 | INFO     | --- collectZombieJob: --- 10, [1510392]
[2025-11-26 16:06:38] 2025-11-26 15:06:05,652 | INFO     | zombie collector waiting for pid 1510392
[2025-11-26 16:06:38] 2025-11-26 15:06:05,652 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 16:06:38] 2025-11-26 15:06:05,653 | INFO     | collected zombie processes
[2025-11-26 16:06:38] 2025-11-26 15:06:05,653 | INFO     | will attempt to kill all subprocesses of pid=1510392
[2025-11-26 16:06:38] 2025-11-26 15:06:05,695 | INFO     | process IDs to be killed: [1510392] (in reverse order)
[2025-11-26 16:06:38] 2025-11-26 15:06:05,721 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 16:06:38] 2025-11-26 15:06:05,721 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 16:06:38] 2025-11-26 15:06:05,722 | INFO     | did not find any defunct processes belonging to 1510392
[2025-11-26 16:06:38] 2025-11-26 15:06:05,723 | INFO     | did not find any defunct processes belonging to 1510392
[2025-11-26 16:06:38] 2025-11-26 15:06:05,724 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 16:06:38] 2025-11-26 15:06:05,724 | INFO     | ready for new job
[2025-11-26 16:06:38] 2025-11-26 15:06:05,724 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 16:06:38] 2025-11-26 15:06:05,725 | INFO     | ***************************************
[2025-11-26 16:06:38] 2025-11-26 15:06:05,725 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 16:06:38] 2025-11-26 15:06:05,725 | INFO     | ***************************************
[2025-11-26 16:06:38] 2025-11-26 15:06:05,725 | INFO     | 
[2025-11-26 16:06:38] 2025-11-26 15:06:05,725 | INFO     | architecture information:
[2025-11-26 16:06:38] 2025-11-26 15:06:05,726 | INFO     | executing command: cat /etc/os-release
[2025-11-26 16:06:38] 2025-11-26 15:06:05,735 | INFO     | cat /etc/os-release:
[2025-11-26 16:06:38] NAME="CentOS Linux"
[2025-11-26 16:06:38] VERSION="7 (Core)"
[2025-11-26 16:06:38] ID="centos"
[2025-11-26 16:06:38] ID_LIKE="rhel fedora"
[2025-11-26 16:06:38] VERSION_ID="7"
[2025-11-26 16:06:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 16:06:38] ANSI_COLOR="0;31"
[2025-11-26 16:06:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 16:06:38] HOME_URL="https://www.centos.org/"
[2025-11-26 16:06:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 16:06:38] 
[2025-11-26 16:06:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 16:06:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 16:06:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 16:06:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 16:06:38] 
[2025-11-26 16:06:38] 2025-11-26 15:06:05,735 | INFO     | ***************************************
[2025-11-26 16:06:38] 2025-11-26 15:06:06,236 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 16:06:38] 2025-11-26 15:06:06,249 | INFO     | sufficient remaining disk space (367099117568 B)
[2025-11-26 16:06:38] 2025-11-26 15:06:06,249 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 16:06:38] 2025-11-26 15:06:06,249 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 16:06:38] 2025-11-26 15:06:06,249 | INFO     | update_server=False
[2025-11-26 16:06:38] 2025-11-26 15:06:06,249 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 16:06:38] 2025-11-26 15:06:06,249 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:06:38] 2025-11-26 15:06:06,250 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 16:06:38] 2025-11-26 15:06:06,376 | INFO     | all data control threads have been joined
[2025-11-26 16:06:38] 2025-11-26 15:06:06,393 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:06:38] 2025-11-26 15:06:06,394 | INFO     | aborting loop
[2025-11-26 16:06:38] 2025-11-26 15:06:06,493 | INFO     | all job control threads have been joined
[2025-11-26 16:06:38] 2025-11-26 15:06:06,744 | INFO     | all payload control threads have been joined
[2025-11-26 16:06:38] 2025-11-26 15:06:07,255 | INFO     | [job] retrieve thread has finished
[2025-11-26 16:06:38] 2025-11-26 15:06:07,255 | INFO     | [job] queue monitor thread has finished
[2025-11-26 16:06:38] 2025-11-26 15:06:07,276 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 16:06:38] 2025-11-26 15:06:07,382 | INFO     | [data] control thread has finished
[2025-11-26 16:06:38] 2025-11-26 15:06:07,399 | INFO     | [job] job monitor thread has finished
[2025-11-26 16:06:38] 2025-11-26 15:06:07,492 | INFO     | [payload] failed_post thread has finished
[2025-11-26 16:06:38] 2025-11-26 15:06:07,499 | INFO     | [job] control thread has finished
[2025-11-26 16:06:38] 2025-11-26 15:06:07,531 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 16:06:38] 2025-11-26 15:06:07,750 | INFO     | [payload] control thread has finished
[2025-11-26 16:06:38] 2025-11-26 15:06:08,166 | INFO     | [payload] validate_post thread has finished
[2025-11-26 16:06:38] 2025-11-26 15:06:08,452 | INFO     | [data] copytool_in thread has finished
[2025-11-26 16:06:38] 2025-11-26 15:06:08,567 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 16:06:38] 2025-11-26 15:06:08,568 | INFO     | [job] validate thread has finished
[2025-11-26 16:06:38] 2025-11-26 15:06:08,634 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 16:06:38] 2025-11-26 15:06:09,282 | INFO     | [data] copytool_out thread has finished
[2025-11-26 16:06:38] 2025-11-26 15:06:10,252 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 16:06:38] 2025-11-26 15:06:16,506 | INFO     | job.realtimelogging is not enabled
[2025-11-26 16:06:38] 2025-11-26 15:06:17,512 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 16:06:38] 2025-11-26 15:06:32,442 | INFO     | [monitor] cgroup control has ended
[2025-11-26 16:06:38] 2025-11-26 15:06:33,098 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140586954770240)>', '<ExcThread(monitor, started 140586451445504)>']
[2025-11-26 16:06:38] 2025-11-26 15:06:36,503 | INFO     | PID=1503948 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 16:06:38] 2025-11-26 15:06:36,503 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 16:06:38] 2025-11-26 15:06:36,503 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 16:06:38] 2025-11-26 15:06:36,503 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 16:06:38] 2025-11-26 15:06:36,503 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 16:06:38] 2025-11-26 15:06:36,503 | INFO     | [monitor] control thread has ended
[2025-11-26 16:06:38] 2025-11-26 15:06:38,104 | INFO     | all workflow threads have been joined
[2025-11-26 16:06:38] 2025-11-26 15:06:38,105 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 16:06:38] 2025-11-26 15:06:38,105 | INFO     | traces error code: 0
[2025-11-26 16:06:38] 2025-11-26 15:06:38,105 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 16:06:38] 2025-11-26 15:06:38,156 [wrapper] ==== pilot stdout END ====
[2025-11-26 16:06:38] 2025-11-26 15:06:38,159 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 16:06:38] 2025-11-26 15:06:38,161 [wrapper] pilotpid: 1503948
[2025-11-26 16:06:38] 2025-11-26 15:06:38,164 [wrapper] Pilot exit status: 0
[2025-11-26 16:06:38] 2025-11-26 15:06:38,171 [wrapper] pandaids: 6895337465
[2025-11-26 16:06:38] 2025-11-26 15:06:38,188 [wrapper] cleanup supervisor_pilot 1560828 1503949
[2025-11-26 16:06:38] 2025-11-26 15:06:38,191 [wrapper] Test setup, not cleaning
[2025-11-26 16:06:38] 2025-11-26 15:06:38,194 [wrapper] apfmon messages muted
[2025-11-26 16:06:38] 2025-11-26 15:06:38,196 [wrapper] ==== wrapper stdout END ====
[2025-11-26 16:06:38] 2025-11-26 15:06:38,199 [wrapper] ==== wrapper stderr END ====
[2025-11-26 16:06:38]  *** Error codes and diagnostics ***
[2025-11-26 16:06:38]     "exeErrorCode": 0,
[2025-11-26 16:06:38]     "exeErrorDiag": "",
[2025-11-26 16:06:38]     "pilotErrorCode": 0,
[2025-11-26 16:06:38]     "pilotErrorDiag": "",
[2025-11-26 16:06:38]  *** Listing of results directory ***
[2025-11-26 16:06:38] total 1336152
[2025-11-26 16:06:38] -rw-r--r-- 1 boinc boinc    576529 Nov 22 08:52 pilot3.tar.gz
[2025-11-26 16:06:38] -rwx------ 1 boinc boinc     36292 Nov 22 09:03 runpilot2-wrapper.sh
[2025-11-26 16:06:38] -rw-r--r-- 1 boinc boinc      5112 Nov 22 09:03 queuedata.json
[2025-11-26 16:06:38] -rw-r--r-- 1 boinc boinc       100 Nov 26 08:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 16:06:38] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 08:02 run_atlas
[2025-11-26 16:06:38] -rw-r--r-- 1 boinc boinc       105 Nov 26 08:02 job.xml
[2025-11-26 16:06:38] -rw-r--r-- 2 boinc boinc 411891150 Nov 26 08:02 EVNT.47483658._000306.pool.root.1
[2025-11-26 16:06:38] -rw-r--r-- 2 boinc boinc    590101 Nov 26 08:02 input.tar.gz
[2025-11-26 16:06:38] -rw-r--r-- 2 boinc boinc     15847 Nov 26 08:02 start_atlas.sh
[2025-11-26 16:06:38] drwxrwx--x 2 boinc boinc      4096 Nov 26 08:02 shared
[2025-11-26 16:06:38] -rw-r--r-- 1 boinc boinc         0 Nov 26 08:02 boinc_setup_complete
[2025-11-26 16:06:38] -rw-r--r-- 1 boinc boinc      6449 Nov 26 08:02 init_data.xml
[2025-11-26 16:06:38] -rw-r--r-- 1 boinc boinc         0 Nov 26 08:02 boinc_lockfile
[2025-11-26 16:06:38] -rw-r--r-- 1 boinc boinc      2785 Nov 26 08:02 pandaJob.out
[2025-11-26 16:06:38] -rw------- 1 boinc boinc    991877 Nov 26 08:02 agis_schedconf.cvmfs.json
[2025-11-26 16:06:38] drwx------ 5 boinc boinc      4096 Nov 26 08:03 pilot3
[2025-11-26 16:06:38] -rw-r--r-- 1 boinc boinc       531 Nov 26 16:01 boinc_task_state.xml
[2025-11-26 16:06:38] -rw------- 1 boinc boinc 941910603 Nov 26 16:05 HITS.47556137._003030.pool.root.1
[2025-11-26 16:06:38] -rw------- 1 boinc boinc      1025 Nov 26 16:05 memory_monitor_summary.json
[2025-11-26 16:06:38] -rw------- 1 boinc boinc   1516240 Nov 26 16:05 agis_ddmendpoints.agis.ALL.json
[2025-11-26 16:06:38] -rw------- 1 boinc boinc   1175519 Nov 26 16:05 log.47556137._003030.job.log.tgz.1
[2025-11-26 16:06:38] -rw------- 1 boinc boinc      8576 Nov 26 16:06 heartbeat.json
[2025-11-26 16:06:38] -rw-r--r-- 1 boinc boinc      8192 Nov 26 16:06 boinc_mmap_file
[2025-11-26 16:06:38] -rw-r--r-- 1 boinc boinc        28 Nov 26 16:06 wrapper_checkpoint.txt
[2025-11-26 16:06:38] -rw------- 1 boinc boinc        95 Nov 26 16:06 pilot_heartbeat.json
[2025-11-26 16:06:38] -rw------- 1 boinc boinc      4824 Nov 26 16:06 pilotlog.txt
[2025-11-26 16:06:38] -rw------- 1 boinc boinc   4079736 Nov 26 16:06 log.47556137._003030.job.log.1
[2025-11-26 16:06:38] -rw------- 1 boinc boinc       353 Nov 26 16:06 output.list
[2025-11-26 16:06:38] -rw-r--r-- 1 boinc boinc       620 Nov 26 16:06 runtime_log
[2025-11-26 16:06:38] -rw------- 1 boinc boinc   5273600 Nov 26 16:06 result.tar.gz
[2025-11-26 16:06:38] -rw-r--r-- 1 boinc boinc      8913 Nov 26 16:06 runtime_log.err
[2025-11-26 16:06:38] -rw------- 1 boinc boinc       668 Nov 26 16:06 gqSKDmclxg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmG1HKDmdCuupm.diag
[2025-11-26 16:06:38] -rw-r--r-- 1 boinc boinc     11027 Nov 26 16:06 stderr.txt
[2025-11-26 16:06:38] HITS file was successfully produced:
[2025-11-26 16:06:38] -rw------- 1 boinc boinc 941910603 Nov 26 16:05 shared/HITS.pool.root.1
[2025-11-26 16:06:38]  *** Contents of shared directory: ***
[2025-11-26 16:06:38] total 1327832
[2025-11-26 16:06:38] -rw-r--r-- 2 boinc boinc 411891150 Nov 26 08:02 ATLAS.root_0
[2025-11-26 16:06:38] -rw-r--r-- 2 boinc boinc    590101 Nov 26 08:02 input.tar.gz
[2025-11-26 16:06:38] -rw-r--r-- 2 boinc boinc     15847 Nov 26 08:02 start_atlas.sh
[2025-11-26 16:06:38] -rw------- 1 boinc boinc 941910603 Nov 26 16:05 HITS.pool.root.1
[2025-11-26 16:06:38] -rw------- 1 boinc boinc   5273600 Nov 26 16:06 result.tar.gz
16:07:00 (1500225): run_atlas exited; CPU time 85432.404438
16:07:00 (1500225): called boinc_finish(0)

</stderr_txt>
]]>

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