Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:50:51 (21030): wrapper (7.7.26015): starting
10:50:51 (21030): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 10:50:51] Arguments: --nthreads 12
[2025-11-23 10:50:51] Threads: 12
[2025-11-23 10:50:51] Checking for CVMFS
[2025-11-23 10:50:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 10:50:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 10:50:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 10:50:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 10:50:52] 2.11.2.0 2910 34784 94064 153213 2 82 13950984 20275200 1 130560 0 4278640 99.801 1592382 26464 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 10:50:52] CVMFS is ok
[2025-11-23 10:50:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 10:50:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 10:50:52] Further information can be found at the LHC@home message board.
[2025-11-23 10:50:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 10:50:52] Checking for apptainer binary...
[2025-11-23 10:50:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 10:50:52] Running /usr/bin/apptainer --version
[2025-11-23 10:50:52] apptainer version 1.3.2-1.el7
[2025-11-23 10:50:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 10:50:53] c-205-11.aglt2.org
[2025-11-23 10:50:53] apptainer works
[2025-11-23 10:50:53] Set ATHENA_PROC_NUMBER=12
[2025-11-23 10:50:53] Set ATHENA_CORE_NUMBER=12
[2025-11-23 10:50:53] Starting ATLAS job with PandaID=6895346879
[2025-11-23 10:50:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 17:48:56]  *** The last 200 lines of the pilot log: ***
[2025-11-23 17:48:56] 2025-11-23 22:48:09,558 | INFO     | monitor loop #1869: job 0:6895346879 is in state 'finished'
[2025-11-23 17:48:56] 2025-11-23 22:48:09,558 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 17:48:56] 2025-11-23 22:48:09,738 | INFO     | PID=24754 has CPU usage=11.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-23 17:48:56] 2025-11-23 22:48:10,738 | INFO     | time since job start (25021s) is within the limit (172800.0s)
[2025-11-23 17:48:56] 2025-11-23 22:48:11,535 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-23 17:48:56] 2025-11-23 22:48:11,539 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.6666666666667
[2025-11-23 17:48:56] 2025-11-23 22:48:11,542 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895346879/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 17:48:56] 2025-11-23 22:48:11,543 | INFO     | extracted standard info from prmon json
[2025-11-23 17:48:56] 2025-11-23 22:48:11,543 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 17:48:56] 2025-11-23 22:48:11,543 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 17:48:56] 2025-11-23 22:48:11,551 | INFO     | fitting pss+swap vs Time
[2025-11-23 17:48:56] 2025-11-23 22:48:11,551 | INFO     | sum of square deviations: 21370999825.221897
[2025-11-23 17:48:56] 2025-11-23 22:48:11,555 | INFO     | sum of deviations: 312197952386.8028
[2025-11-23 17:48:56] 2025-11-23 22:48:11,555 | INFO     | mean x: 1763925573.6658537
[2025-11-23 17:48:56] 2025-11-23 22:48:11,555 | INFO     | mean y: 4010094.407317073
[2025-11-23 17:48:56] 2025-11-23 22:48:11,555 | INFO     | intersect: -25764272005.865364
[2025-11-23 17:48:56] 2025-11-23 22:48:11,556 | INFO     | chi2: 6.421150387068167
[2025-11-23 17:48:56] 2025-11-23 22:48:11,556 | INFO     | sum of square deviations: 20598643292.58272
[2025-11-23 17:48:56] 2025-11-23 22:48:11,560 | INFO     | sum of deviations: 513388843975.16034
[2025-11-23 17:48:56] 2025-11-23 22:48:11,560 | INFO     | mean x: 1763925421.1679013
[2025-11-23 17:48:56] 2025-11-23 22:48:11,560 | INFO     | mean y: 4049800.012345679
[2025-11-23 17:48:56] 2025-11-23 22:48:11,560 | INFO     | intersect: -43959021940.63346
[2025-11-23 17:48:56] 2025-11-23 22:48:11,561 | INFO     | chi2: 2.9161861195149834
[2025-11-23 17:48:56] 2025-11-23 22:48:11,561 | INFO     | current chi2=2.9161861195149834 (change=54.584678075940765 %)
[2025-11-23 17:48:56] 2025-11-23 22:48:11,561 | INFO     | sum of square deviations: 19845124322.44001
[2025-11-23 17:48:56] 2025-11-23 22:48:11,565 | INFO     | sum of deviations: 563010056152.3102
[2025-11-23 17:48:56] 2025-11-23 22:48:11,565 | INFO     | mean x: 1763925268.67
[2025-11-23 17:48:56] 2025-11-23 22:48:11,565 | INFO     | mean y: 4059776.0175
[2025-11-23 17:48:56] 2025-11-23 22:48:11,565 | INFO     | intersect: -50038844890.46585
[2025-11-23 17:48:56] 2025-11-23 22:48:11,566 | INFO     | chi2: 2.442627494586769
[2025-11-23 17:48:56] 2025-11-23 22:48:11,566 | INFO     | current chi2=2.442627494586769 (change=16.238971228865733 %)
[2025-11-23 17:48:56] 2025-11-23 22:48:11,566 | INFO     | right removable region: 399
[2025-11-23 17:48:56] 2025-11-23 22:48:11,567 | INFO     | sum of square deviations: 20598601812.582714
[2025-11-23 17:48:56] 2025-11-23 22:48:11,570 | INFO     | sum of deviations: 160734245306.01218
[2025-11-23 17:48:56] 2025-11-23 22:48:11,570 | INFO     | mean x: 1763925726.1679013
[2025-11-23 17:48:56] 2025-11-23 22:48:11,570 | INFO     | mean y: 4039889.3086419753
[2025-11-23 17:48:56] 2025-11-23 22:48:11,570 | INFO     | intersect: -13760159882.651905
[2025-11-23 17:48:56] 2025-11-23 22:48:11,571 | INFO     | chi2: 4.125826180714619
[2025-11-23 17:48:56] 2025-11-23 22:48:11,571 | INFO     | current chi2=4.125826180714619 (change=35.74630818453031 %)
[2025-11-23 17:48:56] 2025-11-23 22:48:11,572 | INFO     | sum of square deviations: 19845090527.10986
[2025-11-23 17:48:56] 2025-11-23 22:48:11,575 | INFO     | sum of deviations: 128234148365.51488
[2025-11-23 17:48:56] 2025-11-23 22:48:11,575 | INFO     | mean x: 1763925878.665
[2025-11-23 17:48:56] 2025-11-23 22:48:11,575 | INFO     | mean y: 4046457.2725
[2025-11-23 17:48:56] 2025-11-23 22:48:11,575 | INFO     | intersect: -11394013557.696896
[2025-11-23 17:48:56] 2025-11-23 22:48:11,576 | INFO     | chi2: 4.0798503052062305
[2025-11-23 17:48:56] 2025-11-23 22:48:11,576 | INFO     | current chi2=4.0798503052062305 (change=1.1143434913301524 %)
[2025-11-23 17:48:56] 2025-11-23 22:48:11,576 | INFO     | left removable region: 20
[2025-11-23 17:48:56] 2025-11-23 22:48:11,577 | INFO     | sum of square deviations: 16880709027.852108
[2025-11-23 17:48:56] 2025-11-23 22:48:11,580 | INFO     | sum of deviations: 338388831952.67816
[2025-11-23 17:48:56] 2025-11-23 22:48:11,580 | INFO     | mean x: 1763925848.171504
[2025-11-23 17:48:56] 2025-11-23 22:48:11,580 | INFO     | mean y: 4106034.2664907654
[2025-11-23 17:48:56] 2025-11-23 22:48:11,580 | INFO     | intersect: -35355357032.66138
[2025-11-23 17:48:56] 2025-11-23 22:48:11,581 | INFO     | chi2: 0.03632749433660798
[2025-11-23 17:48:56] 2025-11-23 22:48:11,581 | INFO     | current memory leak: 20.05 B/s (using 379 data points, chi2=0.04)
[2025-11-23 17:48:56] 2025-11-23 22:48:11,581 | INFO     | could have reported an average CPU frequency of 2381 MHz (17 samples)
[2025-11-23 17:48:56] 2025-11-23 22:48:11,581 | INFO     | ..............................
[2025-11-23 17:48:56] 2025-11-23 22:48:11,581 | INFO     | . Timing measurements:
[2025-11-23 17:48:56] 2025-11-23 22:48:11,581 | INFO     | . get job = 0 s
[2025-11-23 17:48:56] 2025-11-23 22:48:11,582 | INFO     | . initial setup = 2 s
[2025-11-23 17:48:56] 2025-11-23 22:48:11,582 | INFO     | . payload setup = 7 s
[2025-11-23 17:48:56] 2025-11-23 22:48:11,582 | INFO     | . stage-in = 0 s
[2025-11-23 17:48:56] 2025-11-23 22:48:11,582 | INFO     | . payload execution = 24982 s
[2025-11-23 17:48:56] 2025-11-23 22:48:11,582 | INFO     | . stage-out = 3 s
[2025-11-23 17:48:56] 2025-11-23 22:48:11,582 | INFO     | . log creation = 0 s
[2025-11-23 17:48:56] 2025-11-23 22:48:11,582 | INFO     | ..............................
[2025-11-23 17:48:56] 2025-11-23 22:48:11,661 | INFO     | 
[2025-11-23 17:48:56] 2025-11-23 22:48:11,661 | INFO     | job summary report
[2025-11-23 17:48:56] 2025-11-23 22:48:11,661 | INFO     | --------------------------------------------------
[2025-11-23 17:48:56] 2025-11-23 22:48:11,661 | INFO     | PanDA job id: 6895346879
[2025-11-23 17:48:56] 2025-11-23 22:48:11,661 | INFO     | task id: 47556137
[2025-11-23 17:48:56] 2025-11-23 22:48:11,662 | INFO     | errors: (none)
[2025-11-23 17:48:56] 2025-11-23 22:48:11,662 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 17:48:56] 2025-11-23 22:48:11,662 | INFO     | pilot state: finished 
[2025-11-23 17:48:56] 2025-11-23 22:48:11,662 | INFO     | transexitcode: 0
[2025-11-23 17:48:56] 2025-11-23 22:48:11,662 | INFO     | exeerrorcode: 0
[2025-11-23 17:48:56] 2025-11-23 22:48:11,662 | INFO     | exeerrordiag: 
[2025-11-23 17:48:56] 2025-11-23 22:48:11,663 | INFO     | exitcode: 0
[2025-11-23 17:48:56] 2025-11-23 22:48:11,663 | INFO     | exitmsg: OK
[2025-11-23 17:48:56] 2025-11-23 22:48:11,663 | INFO     | cpuconsumptiontime: 288252 s
[2025-11-23 17:48:56] 2025-11-23 22:48:11,663 | INFO     | nevents: 1000
[2025-11-23 17:48:56] 2025-11-23 22:48:11,663 | INFO     | neventsw: 0
[2025-11-23 17:48:56] 2025-11-23 22:48:11,663 | INFO     | pid: 31112
[2025-11-23 17:48:56] 2025-11-23 22:48:11,664 | INFO     | pgrp: 31112
[2025-11-23 17:48:56] 2025-11-23 22:48:11,664 | INFO     | corecount: 12
[2025-11-23 17:48:56] 2025-11-23 22:48:11,664 | INFO     | event service: False
[2025-11-23 17:48:56] 2025-11-23 22:48:11,664 | INFO     | sizes: {0: 2298705, 5: 2298967, 11: 2299023, 24993: 2335892, 24997: 2344886, 24998: 2344942, 25006: 2345380}
[2025-11-23 17:48:56] 2025-11-23 22:48:11,664 | INFO     | --------------------------------------------------
[2025-11-23 17:48:56] 2025-11-23 22:48:11,664 | INFO     | 
[2025-11-23 17:48:56] 2025-11-23 22:48:11,665 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-23 17:48:56] 2025-11-23 22:48:11,691 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 17:48:56] 2025-11-23 22:48:11,692 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 17:48:56] 2025-11-23 22:48:11,692 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 17:48:56] 2025-11-23 22:48:11,692 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 17:48:56] 2025-11-23 22:48:11,692 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 17:48:56] 2025-11-23 22:48:11,692 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 17:48:56] 2025-11-23 22:48:11,693 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 17:48:56] 2025-11-23 22:48:11,693 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 17:48:56] 2025-11-23 22:48:11,693 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 17:48:56] 2025-11-23 22:48:11,693 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 17:48:56] 2025-11-23 22:48:11,693 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 17:48:56] 2025-11-23 22:48:11,693 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 17:48:56] 2025-11-23 22:48:11,694 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 17:48:56] 2025-11-23 22:48:11,694 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 17:48:56] 2025-11-23 22:48:11,694 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 17:48:56] 2025-11-23 22:48:11,694 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 17:48:56] 2025-11-23 22:48:11,694 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 17:48:56] 2025-11-23 22:48:11,694 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 17:48:56] 2025-11-23 22:48:11,695 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 17:48:56] 2025-11-23 22:48:11,695 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 17:48:56] 2025-11-23 22:48:11,695 | INFO     | job 6895346879 has completed (purged errors)
[2025-11-23 17:48:56] 2025-11-23 22:48:11,695 | INFO     | overall cleanup function is called
[2025-11-23 17:48:56] 2025-11-23 22:48:12,712 | INFO     | --- collectZombieJob: --- 10, [31112]
[2025-11-23 17:48:56] 2025-11-23 22:48:12,712 | INFO     | zombie collector waiting for pid 31112
[2025-11-23 17:48:56] 2025-11-23 22:48:12,713 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 17:48:56] 2025-11-23 22:48:12,713 | INFO     | collected zombie processes
[2025-11-23 17:48:56] 2025-11-23 22:48:12,713 | INFO     | will attempt to kill all subprocesses of pid=31112
[2025-11-23 17:48:56] 2025-11-23 22:48:12,805 | INFO     | process IDs to be killed: [31112] (in reverse order)
[2025-11-23 17:48:56] 2025-11-23 22:48:12,861 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 17:48:56] 2025-11-23 22:48:12,861 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 17:48:56] 2025-11-23 22:48:12,865 | INFO     | did not find any defunct processes belonging to 31112
[2025-11-23 17:48:56] 2025-11-23 22:48:12,868 | INFO     | did not find any defunct processes belonging to 31112
[2025-11-23 17:48:56] 2025-11-23 22:48:12,870 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 17:48:56] 2025-11-23 22:48:12,870 | INFO     | ready for new job
[2025-11-23 17:48:56] 2025-11-23 22:48:12,870 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 17:48:56] 2025-11-23 22:48:12,872 | INFO     | ***************************************
[2025-11-23 17:48:56] 2025-11-23 22:48:12,872 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 17:48:56] 2025-11-23 22:48:12,873 | INFO     | ***************************************
[2025-11-23 17:48:56] 2025-11-23 22:48:12,873 | INFO     | 
[2025-11-23 17:48:56] 2025-11-23 22:48:12,874 | INFO     | architecture information:
[2025-11-23 17:48:56] 2025-11-23 22:48:12,874 | INFO     | executing command: cat /etc/os-release
[2025-11-23 17:48:56] 2025-11-23 22:48:12,891 | INFO     | cat /etc/os-release:
[2025-11-23 17:48:56] NAME="CentOS Linux"
[2025-11-23 17:48:56] VERSION="7 (Core)"
[2025-11-23 17:48:56] ID="centos"
[2025-11-23 17:48:56] ID_LIKE="rhel fedora"
[2025-11-23 17:48:56] VERSION_ID="7"
[2025-11-23 17:48:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 17:48:56] ANSI_COLOR="0;31"
[2025-11-23 17:48:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 17:48:56] HOME_URL="https://www.centos.org/"
[2025-11-23 17:48:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 17:48:56] 
[2025-11-23 17:48:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 17:48:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 17:48:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 17:48:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 17:48:56] 
[2025-11-23 17:48:56] 2025-11-23 22:48:12,891 | INFO     | ***************************************
[2025-11-23 17:48:56] 2025-11-23 22:48:13,394 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-23 17:48:56] 2025-11-23 22:48:13,413 | INFO     | sufficient remaining disk space (28267511808 B)
[2025-11-23 17:48:56] 2025-11-23 22:48:13,413 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 17:48:56] 2025-11-23 22:48:13,413 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 17:48:56] 2025-11-23 22:48:13,413 | INFO     | update_server=False
[2025-11-23 17:48:56] 2025-11-23 22:48:13,414 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 17:48:56] 2025-11-23 22:48:13,414 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 17:48:56] 2025-11-23 22:48:13,414 | INFO     | aborting loop
[2025-11-23 17:48:56] 2025-11-23 22:48:13,414 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 17:48:56] 2025-11-23 22:48:13,415 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 17:48:56] 2025-11-23 22:48:13,979 | INFO     | all payload control threads have been joined
[2025-11-23 17:48:56] 2025-11-23 22:48:14,186 | INFO     | all data control threads have been joined
[2025-11-23 17:48:56] 2025-11-23 22:48:14,417 | INFO     | [job] retrieve thread has finished
[2025-11-23 17:48:56] 2025-11-23 22:48:14,420 | INFO     | [job] job monitor thread has finished
[2025-11-23 17:48:56] 2025-11-23 22:48:14,421 | INFO     | [job] queue monitor thread has finished
[2025-11-23 17:48:56] 2025-11-23 22:48:14,491 | INFO     | [job] validate thread has finished
[2025-11-23 17:48:56] 2025-11-23 22:48:14,495 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 17:48:56] 2025-11-23 22:48:14,521 | INFO     | all job control threads have been joined
[2025-11-23 17:48:56] 2025-11-23 22:48:14,579 | INFO     | [payload] validate_post thread has finished
[2025-11-23 17:48:56] 2025-11-23 22:48:14,675 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 17:48:56] 2025-11-23 22:48:14,712 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 17:48:56] 2025-11-23 22:48:14,907 | INFO     | [data] copytool_in thread has finished
[2025-11-23 17:48:56] 2025-11-23 22:48:14,984 | INFO     | [payload] control thread has finished
[2025-11-23 17:48:56] 2025-11-23 22:48:15,192 | INFO     | [data] control thread has finished
[2025-11-23 17:48:56] 2025-11-23 22:48:15,312 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 17:48:56] 2025-11-23 22:48:15,415 | INFO     | [data] copytool_out thread has finished
[2025-11-23 17:48:56] 2025-11-23 22:48:15,423 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 17:48:56] 2025-11-23 22:48:15,526 | INFO     | [job] control thread has finished
[2025-11-23 17:48:56] 2025-11-23 22:48:15,686 | INFO     | [payload] failed_post thread has finished
[2025-11-23 17:48:56] 2025-11-23 22:48:18,500 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 17:48:56] 2025-11-23 22:48:43,947 | INFO     | PID=24754 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 17:48:56] 2025-11-23 22:48:43,947 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 17:48:56] 2025-11-23 22:48:43,947 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 17:48:56] 2025-11-23 22:48:43,947 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 17:48:56] 2025-11-23 22:48:49,956 | INFO     | [monitor] cgroup control has ended
[2025-11-23 17:48:56] 2025-11-23 22:48:50,742 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140312857913152)>', '<ExcThread(monitor, started 140312135587584)>']
[2025-11-23 17:48:56] 2025-11-23 22:48:50,971 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 17:48:56] 2025-11-23 22:48:50,971 | INFO     | [monitor] control thread has ended
[2025-11-23 17:48:56] 2025-11-23 22:48:55,751 | INFO     | all workflow threads have been joined
[2025-11-23 17:48:56] 2025-11-23 22:48:55,751 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 17:48:56] 2025-11-23 22:48:55,752 | INFO     | traces error code: 0
[2025-11-23 17:48:56] 2025-11-23 22:48:55,752 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 17:48:56] 2025-11-23 22:48:55,840 [wrapper] ==== pilot stdout END ====
[2025-11-23 17:48:56] 2025-11-23 22:48:55,844 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 17:48:56] 2025-11-23 22:48:55,848 [wrapper] pilotpid: 24754
[2025-11-23 17:48:56] 2025-11-23 22:48:55,852 [wrapper] Pilot exit status: 0
[2025-11-23 17:48:56] 2025-11-23 22:48:55,867 [wrapper] pandaids: 6895346879
[2025-11-23 17:48:56] 2025-11-23 22:48:55,912 [wrapper] cleanup supervisor_pilot 22168 24755
[2025-11-23 17:48:56] 2025-11-23 22:48:55,917 [wrapper] Test setup, not cleaning
[2025-11-23 17:48:56] 2025-11-23 22:48:55,921 [wrapper] apfmon messages muted
[2025-11-23 17:48:56] 2025-11-23 22:48:55,925 [wrapper] ==== wrapper stdout END ====
[2025-11-23 17:48:56] 2025-11-23 22:48:55,928 [wrapper] ==== wrapper stderr END ====
[2025-11-23 17:48:56]  *** Error codes and diagnostics ***
[2025-11-23 17:48:56]     "exeErrorCode": 0,
[2025-11-23 17:48:56]     "exeErrorDiag": "",
[2025-11-23 17:48:56]     "pilotErrorCode": 0,
[2025-11-23 17:48:56]     "pilotErrorDiag": "",
[2025-11-23 17:48:56]  *** Listing of results directory ***
[2025-11-23 17:48:56] total 1325396
[2025-11-23 17:48:56] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 13:28 pilot3.tar.gz
[2025-11-23 17:48:56] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 13:58 queuedata.json
[2025-11-23 17:48:56] -rwx------ 1 boincer umatlas     36292 Nov 22 13:58 runpilot2-wrapper.sh
[2025-11-23 17:48:56] -rw-r--r-- 1 boincer umatlas       100 Nov 23 10:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 17:48:56] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 10:50 run_atlas
[2025-11-23 17:48:56] -rw-r--r-- 1 boincer umatlas       105 Nov 23 10:50 job.xml
[2025-11-23 17:48:56] -rw-r--r-- 2 boincer umatlas 413740543 Nov 23 10:50 EVNT.47483658._000465.pool.root.1
[2025-11-23 17:48:56] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 10:50 start_atlas.sh
[2025-11-23 17:48:56] drwxrwx--x 2 boincer umatlas      4096 Nov 23 10:50 shared
[2025-11-23 17:48:56] -rw-r--r-- 2 boincer umatlas    590101 Nov 23 10:50 input.tar.gz
[2025-11-23 17:48:56] -rw-r--r-- 1 boincer umatlas         0 Nov 23 10:50 boinc_lockfile
[2025-11-23 17:48:56] -rw-r--r-- 1 boincer umatlas      2784 Nov 23 10:50 pandaJob.out
[2025-11-23 17:48:56] -rw------- 1 boincer umatlas    989785 Nov 23 10:51 agis_schedconf.cvmfs.json
[2025-11-23 17:48:56] drwx------ 5 boincer umatlas      4096 Nov 23 10:51 pilot3
[2025-11-23 17:48:56] -rw-r--r-- 1 boincer umatlas      5871 Nov 23 17:36 init_data.xml
[2025-11-23 17:48:56] -rw-r--r-- 1 boincer umatlas       532 Nov 23 17:38 boinc_task_state.xml
[2025-11-23 17:48:56] -rw------- 1 boincer umatlas 928239326 Nov 23 17:47 HITS.47556137._004606.pool.root.1
[2025-11-23 17:48:56] -rw------- 1 boincer umatlas      1060 Nov 23 17:47 memory_monitor_summary.json
[2025-11-23 17:48:56] -rw------- 1 boincer umatlas   1526164 Nov 23 17:48 agis_ddmendpoints.agis.ALL.json
[2025-11-23 17:48:56] -rw------- 1 boincer umatlas   2161423 Nov 23 17:48 log.47556137._004606.job.log.tgz.1
[2025-11-23 17:48:56] -rw------- 1 boincer umatlas      8674 Nov 23 17:48 heartbeat.json
[2025-11-23 17:48:56] -rw------- 1 boincer umatlas        95 Nov 23 17:48 pilot_heartbeat.json
[2025-11-23 17:48:56] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 17:48 boinc_mmap_file
[2025-11-23 17:48:56] -rw-r--r-- 1 boincer umatlas        29 Nov 23 17:48 wrapper_checkpoint.txt
[2025-11-23 17:48:56] -rw------- 1 boincer umatlas      4746 Nov 23 17:48 pilotlog.txt
[2025-11-23 17:48:56] -rw------- 1 boincer umatlas   3494141 Nov 23 17:48 log.47556137._004606.job.log.1
[2025-11-23 17:48:56] -rw------- 1 boincer umatlas       353 Nov 23 17:48 output.list
[2025-11-23 17:48:56] -rw-r--r-- 1 boincer umatlas       620 Nov 23 17:48 runtime_log
[2025-11-23 17:48:56] -rw------- 1 boincer umatlas   5672960 Nov 23 17:48 result.tar.gz
[2025-11-23 17:48:56] -rw-r--r-- 1 boincer umatlas      8820 Nov 23 17:48 runtime_log.err
[2025-11-23 17:48:56] -rw------- 1 boincer umatlas       669 Nov 23 17:48 GE9LDmgz7g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmIEIKDmlylvwm.diag
[2025-11-23 17:48:56] -rw-r--r-- 1 boincer umatlas     21406 Nov 23 17:48 stderr.txt
[2025-11-23 17:48:56] HITS file was successfully produced:
[2025-11-23 17:48:56] -rw------- 1 boincer umatlas 928239326 Nov 23 17:47 shared/HITS.pool.root.1
[2025-11-23 17:48:56]  *** Contents of shared directory: ***
[2025-11-23 17:48:56] total 1316668
[2025-11-23 17:48:56] -rw-r--r-- 2 boincer umatlas 413740543 Nov 23 10:50 ATLAS.root_0
[2025-11-23 17:48:56] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 10:50 start_atlas.sh
[2025-11-23 17:48:56] -rw-r--r-- 2 boincer umatlas    590101 Nov 23 10:50 input.tar.gz
[2025-11-23 17:48:56] -rw------- 1 boincer umatlas 928239326 Nov 23 17:47 HITS.pool.root.1
[2025-11-23 17:48:56] -rw------- 1 boincer umatlas   5672960 Nov 23 17:48 result.tar.gz
17:48:57 (21030): run_atlas exited; CPU time 284243.788747
17:48:57 (21030): called boinc_finish(0)

</stderr_txt>
]]>

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