Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:16 (3797307): wrapper (7.7.26015): starting
00:04:16 (3797307): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 00:04:16] Arguments: --nthreads 12
[2025-11-24 00:04:16] Threads: 12
[2025-11-24 00:04:16] Checking for CVMFS
[2025-11-24 00:04:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:04:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:04:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:04:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:04:20] 2.13.2.0 5795 29586 188288 153233 3 95 23634713 39288833 7830 16776704 0 19860040 99.572 19191928 36855 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 00:04:20] CVMFS is ok
[2025-11-24 00:04:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:04:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:04:20] Further information can be found at the LHC@home message board.
[2025-11-24 00:04:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:04:20] Checking for apptainer binary...
[2025-11-24 00:04:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:04:20] Running /usr/bin/apptainer --version
[2025-11-24 00:04:20] apptainer version 1.4.4-1.el9
[2025-11-24 00:04:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:04:21] c-210-14.aglt2.org
[2025-11-24 00:04:21] apptainer works
[2025-11-24 00:04:21] Set ATHENA_PROC_NUMBER=12
[2025-11-24 00:04:21] Set ATHENA_CORE_NUMBER=12
[2025-11-24 00:04:21] Starting ATLAS job with PandaID=6895346885
[2025-11-24 00:04:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 19:51:02]  *** The last 200 lines of the pilot log: ***
[2025-11-25 19:51:02] 2025-11-26 00:50:17,063 | INFO     | time since job start (157427s) is within the limit (172800.0s)
[2025-11-25 19:51:02] 2025-11-26 00:50:17,616 | INFO     | monitor loop #8561: job 0:6895346885 is in state 'finished'
[2025-11-25 19:51:02] 2025-11-26 00:50:17,616 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 19:51:02] 2025-11-26 00:50:19,070 | INFO     | time since job start (157429s) is within the limit (172800.0s)
[2025-11-25 19:51:02] 2025-11-26 00:50:20,121 | INFO     | monitor loop #8562: job 0:6895346885 is in state 'finished'
[2025-11-25 19:51:02] 2025-11-26 00:50:20,122 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 19:51:02] 2025-11-26 00:50:21,077 | INFO     | time since job start (157431s) is within the limit (172800.0s)
[2025-11-25 19:51:02] 2025-11-26 00:50:22,627 | INFO     | monitor loop #8563: job 0:6895346885 is in state 'finished'
[2025-11-25 19:51:02] 2025-11-26 00:50:22,627 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 19:51:02] 2025-11-26 00:50:23,143 | INFO     | time since job start (157433s) is within the limit (172800.0s)
[2025-11-25 19:51:02] 2025-11-26 00:50:25,132 | INFO     | monitor loop #8564: job 0:6895346885 is in state 'finished'
[2025-11-25 19:51:02] 2025-11-26 00:50:25,133 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 19:51:02] 2025-11-26 00:50:25,149 | INFO     | time since job start (157435s) is within the limit (172800.0s)
[2025-11-25 19:51:02] 2025-11-26 00:50:25,509 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 19:51:02] 2025-11-26 00:50:25,516 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.177925000001
[2025-11-25 19:51:02] 2025-11-26 00:50:25,523 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895346885/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 19:51:02] 2025-11-26 00:50:25,523 | INFO     | extracted standard info from prmon json
[2025-11-25 19:51:02] 2025-11-26 00:50:25,524 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 19:51:02] 2025-11-26 00:50:25,524 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 19:51:02] 2025-11-26 00:50:25,572 | INFO     | fitting pss+swap vs Time
[2025-11-25 19:51:02] 2025-11-26 00:50:25,576 | INFO     | sum of square deviations: 5306385840628.568
[2025-11-25 19:51:02] 2025-11-26 00:50:26,124 | INFO     | sum of deviations: 23223364086355.04
[2025-11-25 19:51:02] 2025-11-26 00:50:26,125 | INFO     | mean x: 1764039573.750485
[2025-11-25 19:51:02] 2025-11-26 00:50:26,125 | INFO     | mean y: 3512403.3701979048
[2025-11-25 19:51:02] 2025-11-26 00:50:26,125 | INFO     | intersect: -7716795639.494118
[2025-11-25 19:51:02] 2025-11-26 00:50:26,133 | INFO     | chi2: 32.63738061949233
[2025-11-25 19:51:02] 2025-11-26 00:50:26,151 | INFO     | sum of square deviations: 5275564777022.271
[2025-11-25 19:51:02] 2025-11-26 00:50:26,695 | INFO     | sum of deviations: 24348950880245.086
[2025-11-25 19:51:02] 2025-11-26 00:50:26,695 | INFO     | mean x: 1764039421.2694402
[2025-11-25 19:51:02] 2025-11-26 00:50:26,695 | INFO     | mean y: 3517971.591368585
[2025-11-25 19:51:02] 2025-11-26 00:50:26,696 | INFO     | intersect: -8138266090.351206
[2025-11-25 19:51:02] 2025-11-26 00:50:26,704 | INFO     | chi2: 29.08923739888353
[2025-11-25 19:51:02] 2025-11-26 00:50:26,706 | INFO     | current chi2=29.08923739888353 (change=10.871409265269628 %)
[2025-11-25 19:51:02] 2025-11-26 00:50:26,706 | INFO     | right removable region: 2571
[2025-11-25 19:51:02] 2025-11-26 00:50:26,715 | INFO     | sum of square deviations: 5275549449552.275
[2025-11-25 19:51:02] 2025-11-26 00:50:27,292 | INFO     | sum of deviations: 21912466840192.3
[2025-11-25 19:51:02] 2025-11-26 00:50:27,293 | INFO     | mean x: 1764039726.2694402
[2025-11-25 19:51:02] 2025-11-26 00:50:27,293 | INFO     | mean y: 3518886.949066874
[2025-11-25 19:51:02] 2025-11-26 00:50:27,293 | INFO     | intersect: -7323578010.975287
[2025-11-25 19:51:02] 2025-11-26 00:50:27,299 | INFO     | chi2: 28.063010439148883
[2025-11-25 19:51:02] 2025-11-26 00:50:27,304 | INFO     | current chi2=28.063010439148883 (change=14.015739294995555 %)
[2025-11-25 19:51:02] 2025-11-26 00:50:27,304 | INFO     | left removable region: 10
[2025-11-25 19:51:02] 2025-11-26 00:50:27,312 | INFO     | sum of square deviations: 5208148709366.539
[2025-11-25 19:51:02] 2025-11-26 00:50:27,665 | INFO     | monitor loop #8565: job 0:6895346885 is in state 'finished'
[2025-11-25 19:51:02] 2025-11-26 00:50:27,665 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 19:51:02] 2025-11-26 00:50:28,323 | INFO     | sum of deviations: 22037440394623.082
[2025-11-25 19:51:02] 2025-11-26 00:50:28,324 | INFO     | mean x: 1764039695.8110113
[2025-11-25 19:51:02] 2025-11-26 00:50:28,324 | INFO     | mean y: 3531613.8926200704
[2025-11-25 19:51:02] 2025-11-26 00:50:28,324 | INFO     | intersect: -7460717550.1663885
[2025-11-25 19:51:02] 2025-11-26 00:50:28,331 | INFO     | chi2: 19.989409840114526
[2025-11-25 19:51:02] 2025-11-26 00:50:28,331 | INFO     | current memory leak: 4.23 B/s (using 2561 data points, chi2=19.99)
[2025-11-25 19:51:02] 2025-11-26 00:50:28,339 | INFO     | could have reported an average CPU frequency of 2597 MHz (88 samples)
[2025-11-25 19:51:02] 2025-11-26 00:50:28,344 | INFO     | ..............................
[2025-11-25 19:51:02] 2025-11-26 00:50:28,344 | INFO     | . Timing measurements:
[2025-11-25 19:51:02] 2025-11-26 00:50:28,344 | INFO     | . get job = 0 s
[2025-11-25 19:51:02] 2025-11-26 00:50:28,344 | INFO     | . initial setup = 10 s
[2025-11-25 19:51:02] 2025-11-26 00:50:28,344 | INFO     | . payload setup = 68 s
[2025-11-25 19:51:02] 2025-11-26 00:50:28,344 | INFO     | . stage-in = 0 s
[2025-11-25 19:51:02] 2025-11-26 00:50:28,344 | INFO     | . payload execution = 157238 s
[2025-11-25 19:51:02] 2025-11-26 00:50:28,353 | INFO     | . stage-out = 7 s
[2025-11-25 19:51:02] 2025-11-26 00:50:28,353 | INFO     | . log creation = 2 s
[2025-11-25 19:51:02] 2025-11-26 00:50:28,353 | INFO     | ..............................
[2025-11-25 19:51:02] 2025-11-26 00:50:28,420 | INFO     | PID=3803636 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 19:51:02] 2025-11-26 00:50:28,420 | INFO     | .. there are 9 such processes running
[2025-11-25 19:51:02] 2025-11-26 00:50:28,671 | INFO     | 
[2025-11-25 19:51:02] 2025-11-26 00:50:28,679 | INFO     | job summary report
[2025-11-25 19:51:02] 2025-11-26 00:50:28,679 | INFO     | --------------------------------------------------
[2025-11-25 19:51:02] 2025-11-26 00:50:28,679 | INFO     | PanDA job id: 6895346885
[2025-11-25 19:51:02] 2025-11-26 00:50:28,679 | INFO     | task id: 47556137
[2025-11-25 19:51:02] 2025-11-26 00:50:28,679 | INFO     | errors: (none)
[2025-11-25 19:51:02] 2025-11-26 00:50:28,679 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 19:51:02] 2025-11-26 00:50:28,680 | INFO     | pilot state: finished 
[2025-11-25 19:51:02] 2025-11-26 00:50:28,680 | INFO     | transexitcode: 0
[2025-11-25 19:51:02] 2025-11-26 00:50:28,680 | INFO     | exeerrorcode: 0
[2025-11-25 19:51:02] 2025-11-26 00:50:28,680 | INFO     | exeerrordiag: 
[2025-11-25 19:51:02] 2025-11-26 00:50:28,680 | INFO     | exitcode: 0
[2025-11-25 19:51:02] 2025-11-26 00:50:28,680 | INFO     | exitmsg: OK
[2025-11-25 19:51:02] 2025-11-26 00:50:28,680 | INFO     | cpuconsumptiontime: 306747 s
[2025-11-25 19:51:02] 2025-11-26 00:50:28,680 | INFO     | nevents: 1000
[2025-11-25 19:51:02] 2025-11-26 00:50:28,680 | INFO     | neventsw: 0
[2025-11-25 19:51:02] 2025-11-26 00:50:28,681 | INFO     | pid: 3813509
[2025-11-25 19:51:02] 2025-11-26 00:50:28,681 | INFO     | pgrp: 3813509
[2025-11-25 19:51:02] 2025-11-26 00:50:28,681 | INFO     | corecount: 12
[2025-11-25 19:51:02] 2025-11-26 00:50:28,681 | INFO     | event service: False
[2025-11-25 19:51:02] 2025-11-26 00:50:28,681 | INFO     | sizes: {0: 2298584, 1: 2298584, 2: 2298811, 3: 2298811, 15: 2298839, 26: 2298867, 37: 2299023, 43: 2299313, 49: 2299341, 157310: 2393657, 157318: 2403447, 157319: 
[2025-11-25 19:51:02] 2025-11-26 00:50:28,681 | INFO     | --------------------------------------------------
[2025-11-25 19:51:02] 2025-11-26 00:50:28,681 | INFO     | 
[2025-11-25 19:51:02] 2025-11-26 00:50:28,681 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 19:51:02] 2025-11-26 00:50:28,767 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 19:51:02] 2025-11-26 00:50:28,768 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 19:51:02] 2025-11-26 00:50:28,768 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 19:51:02] 2025-11-26 00:50:28,768 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 19:51:02] 2025-11-26 00:50:28,768 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 19:51:02] 2025-11-26 00:50:28,768 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 19:51:02] 2025-11-26 00:50:28,768 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 19:51:02] 2025-11-26 00:50:28,768 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 19:51:02] 2025-11-26 00:50:28,768 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 19:51:02] 2025-11-26 00:50:28,769 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 19:51:02] 2025-11-26 00:50:28,769 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 19:51:02] 2025-11-26 00:50:28,769 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 19:51:02] 2025-11-26 00:50:28,769 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 19:51:02] 2025-11-26 00:50:28,769 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 19:51:02] 2025-11-26 00:50:28,769 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 19:51:02] 2025-11-26 00:50:28,769 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 19:51:02] 2025-11-26 00:50:28,769 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 19:51:02] 2025-11-26 00:50:28,770 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 19:51:02] 2025-11-26 00:50:28,770 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 19:51:02] 2025-11-26 00:50:28,770 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 19:51:02] 2025-11-26 00:50:28,770 | INFO     | job 6895346885 has completed (purged errors)
[2025-11-25 19:51:02] 2025-11-26 00:50:28,770 | INFO     | overall cleanup function is called
[2025-11-25 19:51:02] 2025-11-26 00:50:29,812 | INFO     | --- collectZombieJob: --- 10, [3813509]
[2025-11-25 19:51:02] 2025-11-26 00:50:29,812 | INFO     | zombie collector waiting for pid 3813509
[2025-11-25 19:51:02] 2025-11-26 00:50:29,812 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 19:51:02] 2025-11-26 00:50:29,812 | INFO     | collected zombie processes
[2025-11-25 19:51:02] 2025-11-26 00:50:29,812 | INFO     | will attempt to kill all subprocesses of pid=3813509
[2025-11-25 19:51:02] 2025-11-26 00:50:30,503 | INFO     | process IDs to be killed: [3813509] (in reverse order)
[2025-11-25 19:51:02] 2025-11-26 00:50:30,646 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 19:51:02] 2025-11-26 00:50:30,646 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 19:51:02] 2025-11-26 00:50:30,669 | INFO     | did not find any defunct processes belonging to 3813509
[2025-11-25 19:51:02] 2025-11-26 00:50:30,685 | INFO     | did not find any defunct processes belonging to 3813509
[2025-11-25 19:51:02] 2025-11-26 00:50:30,695 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 19:51:02] 2025-11-26 00:50:30,695 | INFO     | ready for new job
[2025-11-25 19:51:02] 2025-11-26 00:50:30,695 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 19:51:02] 2025-11-26 00:50:30,705 | INFO     | ***************************************
[2025-11-25 19:51:02] 2025-11-26 00:50:30,705 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 19:51:02] 2025-11-26 00:50:30,705 | INFO     | ***************************************
[2025-11-25 19:51:02] 2025-11-26 00:50:30,705 | INFO     | 
[2025-11-25 19:51:02] 2025-11-26 00:50:30,709 | INFO     | architecture information:
[2025-11-25 19:51:02] 2025-11-26 00:50:30,722 | INFO     | executing command: cat /etc/os-release
[2025-11-25 19:51:02] 2025-11-26 00:50:30,784 | INFO     | cat /etc/os-release:
[2025-11-25 19:51:02] NAME="CentOS Linux"
[2025-11-25 19:51:02] VERSION="7 (Core)"
[2025-11-25 19:51:02] ID="centos"
[2025-11-25 19:51:02] ID_LIKE="rhel fedora"
[2025-11-25 19:51:02] VERSION_ID="7"
[2025-11-25 19:51:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 19:51:02] ANSI_COLOR="0;31"
[2025-11-25 19:51:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 19:51:02] HOME_URL="https://www.centos.org/"
[2025-11-25 19:51:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 19:51:02] 
[2025-11-25 19:51:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 19:51:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 19:51:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 19:51:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 19:51:02] 
[2025-11-25 19:51:02] 2025-11-26 00:50:30,784 | INFO     | ***************************************
[2025-11-25 19:51:02] 2025-11-26 00:50:31,288 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 19:51:02] 2025-11-26 00:50:31,342 | INFO     | sufficient remaining disk space (49484398592 B)
[2025-11-25 19:51:02] 2025-11-26 00:50:31,342 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 19:51:02] 2025-11-26 00:50:31,343 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 19:51:02] 2025-11-26 00:50:31,343 | INFO     | update_server=False
[2025-11-25 19:51:02] 2025-11-26 00:50:31,343 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 19:51:02] 2025-11-26 00:50:31,344 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 19:51:02] 2025-11-26 00:50:31,344 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:51:02] 2025-11-26 00:50:31,344 | INFO     | aborting loop
[2025-11-25 19:51:02] 2025-11-26 00:50:31,362 | INFO     | all payload control threads have been joined
[2025-11-25 19:51:02] 2025-11-26 00:50:31,566 | INFO     | all job control threads have been joined
[2025-11-25 19:51:02] 2025-11-26 00:50:31,768 | INFO     | all data control threads have been joined
[2025-11-25 19:51:02] 2025-11-26 00:50:32,149 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 19:51:02] 2025-11-26 00:50:32,349 | INFO     | [job] retrieve thread has finished
[2025-11-25 19:51:02] 2025-11-26 00:50:32,352 | INFO     | [job] job monitor thread has finished
[2025-11-25 19:51:02] 2025-11-26 00:50:32,368 | INFO     | [payload] control thread has finished
[2025-11-25 19:51:02] 2025-11-26 00:50:32,572 | INFO     | [job] control thread has finished
[2025-11-25 19:51:02] 2025-11-26 00:50:32,604 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 19:51:02] 2025-11-26 00:50:32,774 | INFO     | [data] control thread has finished
[2025-11-25 19:51:02] 2025-11-26 00:50:33,026 | INFO     | [job] validate thread has finished
[2025-11-25 19:51:02] 2025-11-26 00:50:33,030 | INFO     | [data] copytool_in thread has finished
[2025-11-25 19:51:02] 2025-11-26 00:50:33,127 | INFO     | [payload] validate_post thread has finished
[2025-11-25 19:51:02] 2025-11-26 00:50:33,257 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 19:51:02] 2025-11-26 00:50:33,353 | INFO     | [data] copytool_out thread has finished
[2025-11-25 19:51:02] 2025-11-26 00:50:33,390 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 19:51:02] 2025-11-26 00:50:33,555 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 19:51:02] 2025-11-26 00:50:33,665 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:51:02] 2025-11-26 00:50:33,843 | INFO     | [payload] failed_post thread has finished
[2025-11-25 19:51:02] 2025-11-26 00:50:34,671 | INFO     | [job] queue monitor thread has finished
[2025-11-25 19:51:02] 2025-11-26 00:50:36,158 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 19:51:02] 2025-11-26 00:50:46,567 | INFO     | [monitor] cgroup control has ended
[2025-11-25 19:51:02] 2025-11-26 00:50:47,233 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139986032150336)>', '<ExcThread(monitor, started 139985759999744)>']
[2025-11-25 19:51:02] 2025-11-26 00:50:52,259 | INFO     | all workflow threads have been joined
[2025-11-25 19:51:02] 2025-11-26 00:50:52,259 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 19:51:02] 2025-11-26 00:50:52,259 | INFO     | traces error code: 0
[2025-11-25 19:51:02] 2025-11-26 00:50:52,260 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 19:51:02] 2025-11-26 00:51:01,133 | INFO     | PID=3803636 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 19:51:02] 2025-11-26 00:51:01,133 | INFO     | .. there are 9 such processes running
[2025-11-25 19:51:02] 2025-11-26 00:51:01,133 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 19:51:02] 2025-11-26 00:51:01,133 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 19:51:02] 2025-11-26 00:51:01,133 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 19:51:02] 2025-11-26 00:51:01,134 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 19:51:02] 2025-11-26 00:51:01,134 | INFO     | [monitor] control thread has ended
[2025-11-25 19:51:02] 2025-11-26 00:51:01,260 [wrapper] ==== pilot stdout END ====
[2025-11-25 19:51:02] 2025-11-26 00:51:01,272 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 19:51:02] 2025-11-26 00:51:01,287 [wrapper] pilotpid: 3803636
[2025-11-25 19:51:02] 2025-11-26 00:51:01,308 [wrapper] Pilot exit status: 0
[2025-11-25 19:51:02] 2025-11-26 00:51:01,346 [wrapper] pandaids: 6895346885
[2025-11-25 19:51:02] 2025-11-26 00:51:01,453 [wrapper] cleanup supervisor_pilot 3343922 3803637
[2025-11-25 19:51:02] 2025-11-26 00:51:01,465 [wrapper] Test setup, not cleaning
[2025-11-25 19:51:02] 2025-11-26 00:51:01,480 [wrapper] apfmon messages muted
[2025-11-25 19:51:02] 2025-11-26 00:51:01,495 [wrapper] ==== wrapper stdout END ====
[2025-11-25 19:51:02] 2025-11-26 00:51:01,510 [wrapper] ==== wrapper stderr END ====
[2025-11-25 19:51:02]  *** Error codes and diagnostics ***
[2025-11-25 19:51:02]     "exeErrorCode": 0,
[2025-11-25 19:51:02]     "exeErrorDiag": "",
[2025-11-25 19:51:02]     "pilotErrorCode": 0,
[2025-11-25 19:51:02]     "pilotErrorDiag": "",
[2025-11-25 19:51:02]  *** Listing of results directory ***
[2025-11-25 19:51:02] total 1346040
[2025-11-25 19:51:02] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 14:13 pilot3.tar.gz
[2025-11-25 19:51:02] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 14:16 queuedata.json
[2025-11-25 19:51:02] -rwx------. 1 boincer umatlas     36292 Nov 22 14:17 runpilot2-wrapper.sh
[2025-11-25 19:51:02] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 19:51:02] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:04 run_atlas
[2025-11-25 19:51:02] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:04 job.xml
[2025-11-25 19:51:02] -rw-r--r--. 2 boincer umatlas 409729625 Nov 24 00:04 EVNT.47483658._000466.pool.root.1
[2025-11-25 19:51:02] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:04 start_atlas.sh
[2025-11-25 19:51:02] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:04 shared
[2025-11-25 19:51:02] -rw-r--r--. 2 boincer umatlas    590096 Nov 24 00:04 input.tar.gz
[2025-11-25 19:51:02] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:04 boinc_lockfile
[2025-11-25 19:51:02] -rw-r--r--. 1 boincer umatlas      2784 Nov 24 00:04 pandaJob.out
[2025-11-25 19:51:02] -rw-------. 1 boincer umatlas        57 Nov 24 00:04 setup.sh.local
[2025-11-25 19:51:02] -rw-------. 1 boincer umatlas    989786 Nov 24 00:06 agis_schedconf.cvmfs.json
[2025-11-25 19:51:02] drwx------. 5 boincer umatlas      4096 Nov 24 00:06 pilot3
[2025-11-25 19:51:02] -rw-r--r--. 1 boincer umatlas       533 Nov 25 19:25 boinc_task_state.xml
[2025-11-25 19:51:02] -rw-r--r--. 1 boincer umatlas      6662 Nov 25 19:45 init_data.xml
[2025-11-25 19:51:02] -rw-------. 1 boincer umatlas 920320480 Nov 25 19:48 HITS.47556137._004612.pool.root.1
[2025-11-25 19:51:02] -rw-------. 1 boincer umatlas      1080 Nov 25 19:49 memory_monitor_summary.json
[2025-11-25 19:51:02] -rw-------. 1 boincer umatlas   1516240 Nov 25 19:49 agis_ddmendpoints.agis.ALL.json
[2025-11-25 19:51:02] -rw-------. 1 boincer umatlas   3628030 Nov 25 19:50 log.47556137._004612.job.log.tgz.1
[2025-11-25 19:51:02] -rw-------. 1 boincer umatlas        95 Nov 25 19:50 pilot_heartbeat.json
[2025-11-25 19:51:02] -rw-------. 1 boincer umatlas      8000 Nov 25 19:50 heartbeat.json
[2025-11-25 19:51:02] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 19:50 boinc_mmap_file
[2025-11-25 19:51:02] -rw-r--r--. 1 boincer umatlas        29 Nov 25 19:50 wrapper_checkpoint.txt
[2025-11-25 19:51:02] -rw-------. 1 boincer umatlas       822 Nov 25 19:51 pilotlog.txt
[2025-11-25 19:51:02] -rw-------. 1 boincer umatlas  18568169 Nov 25 19:51 log.47556137._004612.job.log.1
[2025-11-25 19:51:02] -rw-------. 1 boincer umatlas       353 Nov 25 19:51 output.list
[2025-11-25 19:51:02] -rw-r--r--. 1 boincer umatlas       620 Nov 25 19:51 runtime_log
[2025-11-25 19:51:02] -rw-------. 1 boincer umatlas  22210560 Nov 25 19:51 result.tar.gz
[2025-11-25 19:51:02] -rw-r--r--. 1 boincer umatlas      9346 Nov 25 19:51 runtime_log.err
[2025-11-25 19:51:02] -rw-------. 1 boincer umatlas       669 Nov 25 19:51 H4IKDmcH8g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmREIKDmpYkaQn.diag
[2025-11-25 19:51:02] -rw-r--r--. 1 boincer umatlas     21902 Nov 25 19:51 stderr.txt
[2025-11-25 19:51:02] HITS file was successfully produced:
[2025-11-25 19:51:02] -rw-------. 1 boincer umatlas 920320480 Nov 25 19:48 shared/HITS.pool.root.1
[2025-11-25 19:51:02]  *** Contents of shared directory: ***
[2025-11-25 19:51:02] total 1321172
[2025-11-25 19:51:02] -rw-r--r--. 2 boincer umatlas 409729625 Nov 24 00:04 ATLAS.root_0
[2025-11-25 19:51:02] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:04 start_atlas.sh
[2025-11-25 19:51:02] -rw-r--r--. 2 boincer umatlas    590096 Nov 24 00:04 input.tar.gz
[2025-11-25 19:51:02] -rw-------. 1 boincer umatlas 920320480 Nov 25 19:48 HITS.pool.root.1
[2025-11-25 19:51:02] -rw-------. 1 boincer umatlas  22210560 Nov 25 19:51 result.tar.gz
19:51:03 (3797307): run_atlas exited; CPU time 308550.960313
19:51:03 (3797307): called boinc_finish(0)

</stderr_txt>
]]>

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