Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:33:14 (292293): wrapper (7.7.26015): starting
07:33:14 (292293): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 07:33:14] Arguments: --nthreads 12
[2025-11-23 07:33:14] Threads: 12
[2025-11-23 07:33:14] Checking for CVMFS
[2025-11-23 07:33:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 07:33:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 07:33:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 07:33:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 07:33:15] 2.11.3.0 1506499 24207 130424 153213 1 109 36512517 45568001 14591 130560 0 263895590 99.796 157754022 17586 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-23 07:33:15] CVMFS is ok
[2025-11-23 07:33:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 07:33:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 07:33:15] Further information can be found at the LHC@home message board.
[2025-11-23 07:33:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 07:33:15] Checking for apptainer binary...
[2025-11-23 07:33:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 07:33:15] Running /usr/bin/apptainer --version
[2025-11-23 07:33:15] apptainer version 1.4.1-1.el9
[2025-11-23 07:33:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 07:33:15] wns0169.triumf.lcg
[2025-11-23 07:33:15] apptainer works
[2025-11-23 07:33:15] Set ATHENA_PROC_NUMBER=12
[2025-11-23 07:33:15] Set ATHENA_CORE_NUMBER=12
[2025-11-23 07:33:15] Starting ATLAS job with PandaID=6895354725
[2025-11-23 07:33:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 07:37:29]  *** The last 200 lines of the pilot log: ***
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | could have reported an average CPU frequency of 3045 MHz (4 samples)
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | ..............................
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | . Timing measurements:
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | . get job = 0 s
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | . initial setup = 2 s
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | . payload setup = 3 s
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | . stage-in = 0 s
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | . payload execution = 39 s
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | . stage-out = 0 s
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | . log creation = 0 s
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | ..............................
[2025-11-23 07:37:29] 2025-11-23 15:36:23,626 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-23 07:37:29] 2025-11-23 15:36:23,626 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895354725/pilotlog.txt
[2025-11-23 07:37:29] 2025-11-23 15:36:23,635 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-23 07:37:29] - Log from pilotlog.txt -
[2025-11-23 07:37:29] 2025-11-23 15:36:23,624 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 07:37:29] 2025-11-23 15:36:23,624 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 07:37:29] 2025-11-23 15:36:23,624 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-23 07:37:29] 2025-11-23 15:36:23,624 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-23 07:37:29] 2025-11-23 15:36:23,624 | WARNING  | found no stored workdir sizes
[2025-11-23 07:37:29] 2025-11-23 15:36:23,624 | INFO     | will not add max space = 0 B to job metrics
[2025-11-23 07:37:29] 2025-11-23 15:36:23,624 | WARNING  | wrong length of table data, x=[1763912023.0], y=[30119.0] (must be same and length>=4)
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | could have reported an average CPU frequency of 3045 MHz (4 samples)
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | ..............................
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | . Timing measurements:
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | . get job = 0 s
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | . initial setup = 2 s
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | . payload setup = 3 s
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | . stage-in = 0 s
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | . payload execution = 39 s
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | . stage-out = 0 s
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | . log creation = 0 s
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | ..............................
[2025-11-23 07:37:29] 2025-11-23 15:36:23,626 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-23 07:37:29] 2025-11-23 15:36:23,626 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895354725/pilotlog.txt
[2025-11-23 07:37:29] 2025-11-23 15:36:23,635 | WARNING  | 
[2025-11-23 07:37:29] [begin log extracts]
[2025-11-23 07:37:29] - Log from pilotlog.txt -
[2025-11-23 07:37:29] 2025-11-23 15:36:23,624 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 07:37:29] 2025-11-23 15:36:23,624 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 07:37:29] 2025-11-23 15:36:23,624 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-23 07:37:29] 2025-11-23 15:36:23,624 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-23 07:37:29] 2025-11-23 15:36:23,624 | WARNING  | found no stored workdir sizes
[2025-11-23 07:37:29] 2025-11-23 15:36:23,624 | INFO     | will not add max space = 0 B to job metrics
[2025-11-23 07:37:29] 2025-11-23 15:36:23,624 | WARNING  | wrong length of table data, x=[1763912023.0], y=[30119.0] (must be same and length>=4)
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | could have reported an average CPU frequency of 3045 MHz (4 samples)
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | ..............................
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | . Timing measurements:
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | . get job = 0 s
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | . initial setup = 2 s
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | . payload setup = 3 s
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | . stage-in = 0 s
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | . payload execution = 39 s
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | . stage-out = 0 s
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | . log creation = 0 s
[2025-11-23 07:37:29] 2025-11-23 15:36:23,625 | INFO     | ..............................
[2025-11-23 07:37:29] 2025-11-23 15:36:23,626 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-23 07:37:29] 2025-11-23 15:36:23,626 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895354725/pilotlog.txt
[2025-11-23 07:37:29] [end log extracts]
[2025-11-23 07:37:29] 2025-11-23 15:36:23,636 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-23 07:37:29] 2025-11-23 15:36:23,636 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-23 07:37:29] 2025-11-23 15:36:23,687 | INFO     | 
[2025-11-23 07:37:29] 2025-11-23 15:36:23,687 | INFO     | job summary report
[2025-11-23 07:37:29] 2025-11-23 15:36:23,687 | INFO     | --------------------------------------------------
[2025-11-23 07:37:29] 2025-11-23 15:36:23,687 | INFO     | PanDA job id: 6895354725
[2025-11-23 07:37:29] 2025-11-23 15:36:23,687 | INFO     | task id: 47556137
[2025-11-23 07:37:29] 2025-11-23 15:36:23,687 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-23 07:34:15,291 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-23 07:37:29] 2025-11-23 15:36:23,687 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-23 07:37:29] 2025-11-23 15:36:23,687 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 07:37:29] 2025-11-23 15:36:23,687 | INFO     | pilot state: failed 
[2025-11-23 07:37:29] 2025-11-23 15:36:23,687 | INFO     | transexitcode: 65
[2025-11-23 07:37:29] 2025-11-23 15:36:23,687 | INFO     | exeerrorcode: 65
[2025-11-23 07:37:29] 2025-11-23 15:36:23,687 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-23 07:37:29] 2025-11-23 15:36:23,687 | INFO     | exitcode: 65
[2025-11-23 07:37:29] 2025-11-23 15:36:23,687 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-23 07:37:29] 2025-11-23 15:36:23,687 | INFO     | cpuconsumptiontime: 33 s
[2025-11-23 07:37:29] 2025-11-23 15:36:23,687 | INFO     | nevents: 0
[2025-11-23 07:37:29] 2025-11-23 15:36:23,687 | INFO     | neventsw: 0
[2025-11-23 07:37:29] 2025-11-23 15:36:23,687 | INFO     | pid: 303598
[2025-11-23 07:37:29] 2025-11-23 15:36:23,687 | INFO     | pgrp: 303598
[2025-11-23 07:37:29] 2025-11-23 15:36:23,688 | INFO     | corecount: 12
[2025-11-23 07:37:29] 2025-11-23 15:36:23,688 | INFO     | event service: False
[2025-11-23 07:37:29] 2025-11-23 15:36:23,688 | INFO     | sizes: {0: 2298804, 3: 2299066, 10: 2299094, 46: 2324610, 48: 2328928, 167: 2329066}
[2025-11-23 07:37:29] 2025-11-23 15:36:23,688 | INFO     | --------------------------------------------------
[2025-11-23 07:37:29] 2025-11-23 15:36:23,688 | INFO     | 
[2025-11-23 07:37:29] 2025-11-23 15:36:23,688 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-23 07:37:29] 2025-11-23 15:36:23,701 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 07:37:29] 2025-11-23 15:36:23,701 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 07:37:29] 2025-11-23 15:36:23,701 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 07:37:29] 2025-11-23 15:36:23,701 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 07:37:29] 2025-11-23 15:36:23,701 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 07:37:29] 2025-11-23 15:36:23,701 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 07:37:29] 2025-11-23 15:36:23,701 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 07:37:29] 2025-11-23 15:36:23,701 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 07:37:29] 2025-11-23 15:36:23,701 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 07:37:29] 2025-11-23 15:36:23,701 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 07:37:29] 2025-11-23 15:36:23,701 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 07:37:29] 2025-11-23 15:36:23,701 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 07:37:29] 2025-11-23 15:36:23,701 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 07:37:29] 2025-11-23 15:36:23,701 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 07:37:29] 2025-11-23 15:36:23,701 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 07:37:29] 2025-11-23 15:36:23,701 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 07:37:29] 2025-11-23 15:36:23,701 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 07:37:29] 2025-11-23 15:36:23,702 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 07:37:29] 2025-11-23 15:36:23,702 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 07:37:29] 2025-11-23 15:36:23,702 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 07:37:29] 2025-11-23 15:36:23,702 | INFO     | job 6895354725 has completed (purged errors)
[2025-11-23 07:37:29] 2025-11-23 15:36:23,702 | INFO     | overall cleanup function is called
[2025-11-23 07:37:29] 2025-11-23 15:36:24,708 | INFO     | --- collectZombieJob: --- 10, [303598]
[2025-11-23 07:37:29] 2025-11-23 15:36:24,708 | INFO     | zombie collector waiting for pid 303598
[2025-11-23 07:37:29] 2025-11-23 15:36:24,708 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 07:37:29] 2025-11-23 15:36:24,708 | INFO     | collected zombie processes
[2025-11-23 07:37:29] 2025-11-23 15:36:24,709 | INFO     | will attempt to kill all subprocesses of pid=303598
[2025-11-23 07:37:29] 2025-11-23 15:36:24,841 | INFO     | process IDs to be killed: [303598] (in reverse order)
[2025-11-23 07:37:29] 2025-11-23 15:36:24,890 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 07:37:29] 2025-11-23 15:36:24,890 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 07:37:29] 2025-11-23 15:36:24,896 | INFO     | did not find any defunct processes belonging to 303598
[2025-11-23 07:37:29] 2025-11-23 15:36:24,902 | INFO     | did not find any defunct processes belonging to 303598
[2025-11-23 07:37:29] 2025-11-23 15:36:24,902 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 07:37:29] 2025-11-23 15:36:24,903 | INFO     | ready for new job
[2025-11-23 07:37:29] 2025-11-23 15:36:24,903 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 07:37:29] 2025-11-23 15:36:24,904 | INFO     | ***************************************
[2025-11-23 07:37:29] 2025-11-23 15:36:24,904 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 07:37:29] 2025-11-23 15:36:24,904 | INFO     | ***************************************
[2025-11-23 07:37:29] 2025-11-23 15:36:24,904 | INFO     | 
[2025-11-23 07:37:29] 2025-11-23 15:36:24,905 | INFO     | architecture information:
[2025-11-23 07:37:29] 2025-11-23 15:36:24,906 | INFO     | executing command: cat /etc/os-release
[2025-11-23 07:37:29] 2025-11-23 15:36:24,915 | INFO     | cat /etc/os-release:
[2025-11-23 07:37:29] NAME="CentOS Linux"
[2025-11-23 07:37:29] VERSION="7 (Core)"
[2025-11-23 07:37:29] ID="centos"
[2025-11-23 07:37:29] ID_LIKE="rhel fedora"
[2025-11-23 07:37:29] VERSION_ID="7"
[2025-11-23 07:37:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 07:37:29] ANSI_COLOR="0;31"
[2025-11-23 07:37:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 07:37:29] HOME_URL="https://www.centos.org/"
[2025-11-23 07:37:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 07:37:29] 
[2025-11-23 07:37:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 07:37:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 07:37:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 07:37:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 07:37:29] 
[2025-11-23 07:37:29] 2025-11-23 15:36:24,916 | INFO     | ***************************************
[2025-11-23 07:37:29] 2025-11-23 15:36:25,418 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-23 07:37:29] 2025-11-23 15:36:25,429 | INFO     | sufficient remaining disk space (2044883632128 B)
[2025-11-23 07:37:29] 2025-11-23 15:36:25,429 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 07:37:29] 2025-11-23 15:36:25,429 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 07:37:29] 2025-11-23 15:36:25,429 | INFO     | update_server=False
[2025-11-23 07:37:29] 2025-11-23 15:36:25,429 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 07:37:29] 2025-11-23 15:36:25,429 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 07:37:29] 2025-11-23 15:36:25,429 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 07:37:29] 2025-11-23 15:36:25,491 | INFO     | all data control threads have been joined
[2025-11-23 07:37:29] 2025-11-23 15:36:25,672 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 07:37:29] 2025-11-23 15:36:25,672 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 07:37:29] 2025-11-23 15:36:25,672 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 07:37:29] 2025-11-23 15:36:25,673 | INFO     | will abort loop
[2025-11-23 07:37:29] 2025-11-23 15:36:25,825 | INFO     | all payload control threads have been joined
[2025-11-23 07:37:29] 2025-11-23 15:36:26,434 | INFO     | [job] queue monitor thread has finished
[2025-11-23 07:37:29] 2025-11-23 15:36:26,434 | INFO     | [job] retrieve thread has finished
[2025-11-23 07:37:29] 2025-11-23 15:36:26,495 | INFO     | [data] control thread has finished
[2025-11-23 07:37:29] 2025-11-23 15:36:26,531 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 07:37:29] 2025-11-23 15:36:26,535 | INFO     | all job control threads have been joined
[2025-11-23 07:37:29] 2025-11-23 15:36:26,678 | INFO     | [job] job monitor thread has finished
[2025-11-23 07:37:29] 2025-11-23 15:36:26,831 | INFO     | [payload] failed_post thread has finished
[2025-11-23 07:37:29] 2025-11-23 15:36:26,831 | INFO     | [payload] control thread has finished
[2025-11-23 07:37:29] 2025-11-23 15:36:27,034 | INFO     | [data] copytool_in thread has finished
[2025-11-23 07:37:29] 2025-11-23 15:36:27,034 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 07:37:29] 2025-11-23 15:36:27,102 | INFO     | [job] validate thread has finished
[2025-11-23 07:37:29] 2025-11-23 15:36:27,194 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 07:37:29] 2025-11-23 15:36:27,291 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 07:37:29] 2025-11-23 15:36:27,434 | INFO     | [data] copytool_out thread has finished
[2025-11-23 07:37:29] 2025-11-23 15:36:27,445 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 07:37:29] 2025-11-23 15:36:27,485 | INFO     | [payload] validate_post thread has finished
[2025-11-23 07:37:29] 2025-11-23 15:36:27,538 | INFO     | [job] control thread has finished
[2025-11-23 07:37:29] 2025-11-23 15:36:31,039 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 07:37:29] 2025-11-23 15:36:56,362 | INFO     | PID=295966 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-23 07:37:29] 2025-11-23 15:36:56,364 | INFO     | .. there are 25 such processes running
[2025-11-23 07:37:29] 2025-11-23 15:36:56,364 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 07:37:29] 2025-11-23 15:36:56,364 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 07:37:29] 2025-11-23 15:36:56,364 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 07:37:29] 2025-11-23 15:37:22,512 | INFO     | [monitor] cgroup control has ended
[2025-11-23 07:37:29] 2025-11-23 15:37:24,265 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140682492573504)>', '<ExcThread(monitor, started 140682073184000)>']
[2025-11-23 07:37:29] 2025-11-23 15:37:24,517 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 07:37:29] 2025-11-23 15:37:24,517 | INFO     | [monitor] control thread has ended
[2025-11-23 07:37:29] 2025-11-23 15:37:29,290 | INFO     | all workflow threads have been joined
[2025-11-23 07:37:29] 2025-11-23 15:37:29,290 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 07:37:29] 2025-11-23 15:37:29,291 | INFO     | traces error code: 0
[2025-11-23 07:37:29] 2025-11-23 15:37:29,291 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 07:37:29] 2025-11-23 15:37:29,397 [wrapper] ==== pilot stdout END ====
[2025-11-23 07:37:29] 2025-11-23 15:37:29,399 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 07:37:29] 2025-11-23 15:37:29,402 [wrapper] pilotpid: 295966
[2025-11-23 07:37:29] 2025-11-23 15:37:29,403 [wrapper] Pilot exit status: 0
[2025-11-23 07:37:29] 2025-11-23 15:37:29,410 [wrapper] pandaids: 6895354725
[2025-11-23 07:37:29] 2025-11-23 15:37:29,443 [wrapper] cleanup supervisor_pilot  295975 295967
[2025-11-23 07:37:29] 2025-11-23 15:37:29,445 [wrapper] Test setup, not cleaning
[2025-11-23 07:37:29] 2025-11-23 15:37:29,446 [wrapper] apfmon messages muted
[2025-11-23 07:37:29] 2025-11-23 15:37:29,448 [wrapper] ==== wrapper stdout END ====
[2025-11-23 07:37:29] 2025-11-23 15:37:29,450 [wrapper] ==== wrapper stderr END ====
[2025-11-23 07:37:29]  *** Error codes and diagnostics ***
[2025-11-23 07:37:29]     "exeErrorCode": 65,
[2025-11-23 07:37:29]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-23 07:37:29]     "pilotErrorCode": 1305,
[2025-11-23 07:37:29]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-23 07:37:29]  *** Listing of results directory ***
[2025-11-23 07:37:29] total 404560
[2025-11-23 07:37:29] -rw-r--r--. 1 boinc boinc    576529 Nov 22 21:21 pilot3.tar.gz
[2025-11-23 07:37:29] -rw-r--r--. 1 boinc boinc      5112 Nov 22 21:27 queuedata.json
[2025-11-23 07:37:29] -rwx------. 1 boinc boinc     36292 Nov 22 21:28 runpilot2-wrapper.sh
[2025-11-23 07:37:29] -rw-r--r--. 1 boinc boinc       100 Nov 23 07:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 07:37:29] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 07:33 run_atlas
[2025-11-23 07:37:29] -rw-r--r--. 1 boinc boinc       105 Nov 23 07:33 job.xml
[2025-11-23 07:37:29] -rw-r--r--. 2 boinc boinc     15847 Nov 23 07:33 start_atlas.sh
[2025-11-23 07:37:29] drwxrwx--x. 2 boinc boinc      4096 Nov 23 07:33 shared
[2025-11-23 07:37:29] -rw-r--r--. 2 boinc boinc    590100 Nov 23 07:33 input.tar.gz
[2025-11-23 07:37:29] -rw-r--r--. 1 boinc boinc      6628 Nov 23 07:33 init_data.xml
[2025-11-23 07:37:29] -rw-r--r--. 2 boinc boinc 410068456 Nov 23 07:33 EVNT.47483658._000629.pool.root.1
[2025-11-23 07:37:29] -rw-r--r--. 1 boinc boinc         0 Nov 23 07:33 boinc_lockfile
[2025-11-23 07:37:29] -rw-r--r--. 1 boinc boinc      2786 Nov 23 07:33 pandaJob.out
[2025-11-23 07:37:29] -rw-------. 1 boinc boinc    989785 Nov 23 07:33 agis_schedconf.cvmfs.json
[2025-11-23 07:37:29] -rw-------. 1 boinc boinc   1526164 Nov 23 07:33 agis_ddmendpoints.agis.ALL.json
[2025-11-23 07:37:29] drwx------. 5 boinc boinc      4096 Nov 23 07:33 pilot3
[2025-11-23 07:37:29] -rw-r--r--. 1 boinc boinc       523 Nov 23 07:34 boinc_task_state.xml
[2025-11-23 07:37:29] -rw-------. 1 boinc boinc      1002 Nov 23 07:34 memory_monitor_summary.json
[2025-11-23 07:37:29] -rw-------. 1 boinc boinc     47359 Nov 23 07:34 log.47556137._006246.job.log.tgz.1
[2025-11-23 07:37:29] -rw-------. 1 boinc boinc        95 Nov 23 07:36 pilot_heartbeat.json
[2025-11-23 07:37:29] -rw-------. 1 boinc boinc     10311 Nov 23 07:36 heartbeat.json
[2025-11-23 07:37:29] -rw-r--r--. 1 boinc boinc      8192 Nov 23 07:37 boinc_mmap_file
[2025-11-23 07:37:29] -rw-r--r--. 1 boinc boinc        23 Nov 23 07:37 wrapper_checkpoint.txt
[2025-11-23 07:37:29] -rw-------. 1 boinc boinc      5008 Nov 23 07:37 pilotlog.txt
[2025-11-23 07:37:29] -rw-------. 1 boinc boinc     91258 Nov 23 07:37 log.47556137._006246.job.log.1
[2025-11-23 07:37:29] -rw-------. 1 boinc boinc       186 Nov 23 07:37 output.list
[2025-11-23 07:37:29] -rw-r--r--. 1 boinc boinc       620 Nov 23 07:37 runtime_log
[2025-11-23 07:37:29] -rw-------. 1 boinc boinc    163840 Nov 23 07:37 result.tar.gz
[2025-11-23 07:37:29] -rw-r--r--. 1 boinc boinc      8636 Nov 23 07:37 runtime_log.err
[2025-11-23 07:37:29] -rw-------. 1 boinc boinc       645 Nov 23 07:37 D76NDmepHh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8eKKDme1jhcn.diag
[2025-11-23 07:37:29] -rw-r--r--. 1 boinc boinc     22224 Nov 23 07:37 stderr.txt
[2025-11-23 07:37:29] No HITS result produced
[2025-11-23 07:37:29]  *** Contents of shared directory: ***
[2025-11-23 07:37:29] total 401220
[2025-11-23 07:37:29] -rw-r--r--. 2 boinc boinc     15847 Nov 23 07:33 start_atlas.sh
[2025-11-23 07:37:29] -rw-r--r--. 2 boinc boinc    590100 Nov 23 07:33 input.tar.gz
[2025-11-23 07:37:29] -rw-r--r--. 2 boinc boinc 410068456 Nov 23 07:33 ATLAS.root_0
[2025-11-23 07:37:29] -rw-------. 1 boinc boinc    163840 Nov 23 07:37 result.tar.gz
07:37:30 (292293): run_atlas exited; CPU time 34.045190
07:37:30 (292293): called boinc_finish(0)

</stderr_txt>
]]>

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