Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:18:04 (2156038): wrapper (7.7.26015): starting
03:18:04 (2156038): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 03:18:04] Arguments: --nthreads 3
[2025-11-27 03:18:04] Threads: 3
[2025-11-27 03:18:04] Checking for CVMFS
[2025-11-27 03:18:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 03:18:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 03:18:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 03:18:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 03:18:04] 2.9.2.0 2015572 984 60964 153343 2 71 15167816 36864001 0 130560 0 359685 99.981 35655 785 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 03:18:04] CVMFS is ok
[2025-11-27 03:18:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 03:18:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 03:18:04] Further information can be found at the LHC@home message board.
[2025-11-27 03:18:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 03:18:04] Checking for apptainer binary...
[2025-11-27 03:18:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 03:18:04] Running /usr/bin/apptainer --version
[2025-11-27 03:18:04] apptainer version 1.4.1-1.1
[2025-11-27 03:18:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 03:18:04] thA359
[2025-11-27 03:18:04] apptainer works
[2025-11-27 03:18:04] Set ATHENA_PROC_NUMBER=3
[2025-11-27 03:18:04] Set ATHENA_CORE_NUMBER=3
[2025-11-27 03:18:04] Starting ATLAS job with PandaID=6895337186
[2025-11-27 03:18:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
10:21:41 (2214989): wrapper (7.7.26015): starting
10:21:41 (2214989): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 10:21:41] Arguments: --nthreads 3
[2025-11-27 10:21:41] Threads: 3
[2025-11-27 10:21:41] This job has been restarted, cleaning up previous attempt
[2025-11-27 10:21:41] Checking for CVMFS
[2025-11-27 10:21:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 10:21:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 10:21:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 10:21:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 10:21:42] 2.9.2.0 2015572 1407 64228 153358 3 1 15252960 36864001 0 130560 0 506046 99.980 55358 1189 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 10:21:42] CVMFS is ok
[2025-11-27 10:21:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 10:21:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 10:21:42] Further information can be found at the LHC@home message board.
[2025-11-27 10:21:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 10:21:42] Checking for apptainer binary...
[2025-11-27 10:21:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 10:21:42] Running /usr/bin/apptainer --version
[2025-11-27 10:21:42] apptainer version 1.4.1-1.1
[2025-11-27 10:21:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 10:21:42] thA359
[2025-11-27 10:21:42] apptainer works
[2025-11-27 10:21:42] Set ATHENA_PROC_NUMBER=3
[2025-11-27 10:21:42] Set ATHENA_CORE_NUMBER=3
[2025-11-27 10:21:42] Starting ATLAS job with PandaID=6895337186
[2025-11-27 10:21:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 18:43:41]  *** The last 200 lines of the pilot log: ***
[2025-11-27 18:43:41] 2025-11-27 17:42:35,147 | INFO     | time since job start (30045s) is within the limit (172800.0s)
[2025-11-27 18:43:41] 2025-11-27 17:42:35,627 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 18:43:41] 2025-11-27 17:42:35,628 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3799.817666666666
[2025-11-27 18:43:41] 2025-11-27 17:42:35,629 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6895337186/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 18:43:41] 2025-11-27 17:42:35,629 | INFO     | extracted standard info from prmon json
[2025-11-27 18:43:41] 2025-11-27 17:42:35,629 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 18:43:41] 2025-11-27 17:42:35,629 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 18:43:41] 2025-11-27 17:42:35,632 | INFO     | fitting pss+swap vs Time
[2025-11-27 18:43:41] 2025-11-27 17:42:35,632 | INFO     | sum of square deviations: 37155011062.0
[2025-11-27 18:43:41] 2025-11-27 17:42:35,634 | INFO     | sum of deviations: 192685251149.0
[2025-11-27 18:43:41] 2025-11-27 17:42:35,634 | INFO     | mean x: 1764250336.0
[2025-11-27 18:43:41] 2025-11-27 17:42:35,634 | INFO     | mean y: 2158083.121703854
[2025-11-27 18:43:41] 2025-11-27 17:42:35,634 | INFO     | intersect: -9147213949.485327
[2025-11-27 18:43:41] 2025-11-27 17:42:35,635 | INFO     | chi2: 4.0202952296987355
[2025-11-27 18:43:41] 2025-11-27 17:42:35,635 | INFO     | sum of square deviations: 36035957522.0
[2025-11-27 18:43:41] 2025-11-27 17:42:35,637 | INFO     | sum of deviations: 264295006891.0
[2025-11-27 18:43:41] 2025-11-27 17:42:35,637 | INFO     | mean x: 1764250183.5
[2025-11-27 18:43:41] 2025-11-27 17:42:35,637 | INFO     | mean y: 2167797.606557377
[2025-11-27 18:43:41] 2025-11-27 17:42:35,637 | INFO     | intersect: -12937200168.98388
[2025-11-27 18:43:41] 2025-11-27 17:42:35,637 | INFO     | chi2: 2.297690270260411
[2025-11-27 18:43:41] 2025-11-27 17:42:35,637 | INFO     | current chi2=2.297690270260411 (change=42.84772289142082 %)
[2025-11-27 18:43:41] 2025-11-27 17:42:35,637 | INFO     | sum of square deviations: 34939602082.0
[2025-11-27 18:43:41] 2025-11-27 17:42:35,639 | INFO     | sum of deviations: 256655553490.0001
[2025-11-27 18:43:41] 2025-11-27 17:42:35,639 | INFO     | mean x: 1764250031.0
[2025-11-27 18:43:41] 2025-11-27 17:42:35,639 | INFO     | mean y: 2166735.453416149
[2025-11-27 18:43:41] 2025-11-27 17:42:35,639 | INFO     | intersect: -12957470501.924519
[2025-11-27 18:43:41] 2025-11-27 17:42:35,640 | INFO     | chi2: 2.297768519773455
[2025-11-27 18:43:41] 2025-11-27 17:42:35,640 | INFO     | current chi2=2.297768519773455 (change=-0.0034055727204230987 %)
[2025-11-27 18:43:41] 2025-11-27 17:42:35,640 | INFO     | right removable region: 482
[2025-11-27 18:43:41] 2025-11-27 17:42:35,640 | INFO     | sum of square deviations: 36035957522.0
[2025-11-27 18:43:41] 2025-11-27 17:42:35,642 | INFO     | sum of deviations: 93494476252.0
[2025-11-27 18:43:41] 2025-11-27 17:42:35,642 | INFO     | mean x: 1764250488.5
[2025-11-27 18:43:41] 2025-11-27 17:42:35,642 | INFO     | mean y: 2171580.0
[2025-11-27 18:43:41] 2025-11-27 17:42:35,642 | INFO     | intersect: -4575136385.216184
[2025-11-27 18:43:41] 2025-11-27 17:42:35,642 | INFO     | chi2: 1.9949002908092974
[2025-11-27 18:43:41] 2025-11-27 17:42:35,642 | INFO     | current chi2=1.9949002908092974 (change=50.37925881481129 %)
[2025-11-27 18:43:41] 2025-11-27 17:42:35,642 | INFO     | sum of square deviations: 34939602082.0
[2025-11-27 18:43:41] 2025-11-27 17:42:35,644 | INFO     | sum of deviations: 70406053844.00006
[2025-11-27 18:43:41] 2025-11-27 17:42:35,644 | INFO     | mean x: 1764250641.0
[2025-11-27 18:43:41] 2025-11-27 17:42:35,644 | INFO     | mean y: 2174774.9585921327
[2025-11-27 18:43:41] 2025-11-27 17:42:35,644 | INFO     | intersect: -3552929411.203548
[2025-11-27 18:43:41] 2025-11-27 17:42:35,644 | INFO     | chi2: 1.785587713109495
[2025-11-27 18:43:41] 2025-11-27 17:42:35,644 | INFO     | current chi2=1.785587713109495 (change=10.492382935835245 %)
[2025-11-27 18:43:41] 2025-11-27 17:42:35,644 | INFO     | left removable region: 20
[2025-11-27 18:43:41] 2025-11-27 17:42:35,645 | INFO     | sum of square deviations: 30577524015.5
[2025-11-27 18:43:41] 2025-11-27 17:42:35,646 | INFO     | sum of deviations: 124352701710.5
[2025-11-27 18:43:41] 2025-11-27 17:42:35,646 | INFO     | mean x: 1764250610.5
[2025-11-27 18:43:41] 2025-11-27 17:42:35,646 | INFO     | mean y: 2185346.1277056276
[2025-11-27 18:43:41] 2025-11-27 17:42:35,646 | INFO     | intersect: -7172670597.043617
[2025-11-27 18:43:41] 2025-11-27 17:42:35,647 | INFO     | chi2: 0.03961862955390523
[2025-11-27 18:43:41] 2025-11-27 17:42:35,647 | INFO     | current memory leak: 4.07 B/s (using 462 data points, chi2=0.04)
[2025-11-27 18:43:41] 2025-11-27 17:42:35,647 | INFO     | could have reported an average CPU frequency of 3937 MHz (20 samples)
[2025-11-27 18:43:41] 2025-11-27 17:42:35,647 | INFO     | ..............................
[2025-11-27 18:43:41] 2025-11-27 17:42:35,647 | INFO     | . Timing measurements:
[2025-11-27 18:43:41] 2025-11-27 17:42:35,647 | INFO     | . get job = 0 s
[2025-11-27 18:43:41] 2025-11-27 17:42:35,647 | INFO     | . initial setup = 1 s
[2025-11-27 18:43:41] 2025-11-27 17:42:35,647 | INFO     | . payload setup = 3 s
[2025-11-27 18:43:41] 2025-11-27 17:42:35,647 | INFO     | . stage-in = 0 s
[2025-11-27 18:43:41] 2025-11-27 17:42:35,647 | INFO     | . payload execution = 30017 s
[2025-11-27 18:43:41] 2025-11-27 17:42:35,647 | INFO     | . stage-out = 1 s
[2025-11-27 18:43:41] 2025-11-27 17:42:35,647 | INFO     | . log creation = 0 s
[2025-11-27 18:43:41] 2025-11-27 17:42:35,647 | INFO     | ..............................
[2025-11-27 18:43:41] 2025-11-27 17:42:35,676 | INFO     | 
[2025-11-27 18:43:41] 2025-11-27 17:42:35,677 | INFO     | job summary report
[2025-11-27 18:43:41] 2025-11-27 17:42:35,677 | INFO     | --------------------------------------------------
[2025-11-27 18:43:41] 2025-11-27 17:42:35,677 | INFO     | PanDA job id: 6895337186
[2025-11-27 18:43:41] 2025-11-27 17:42:35,677 | INFO     | task id: 47556137
[2025-11-27 18:43:41] 2025-11-27 17:42:35,677 | INFO     | errors: (none)
[2025-11-27 18:43:41] 2025-11-27 17:42:35,677 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 18:43:41] 2025-11-27 17:42:35,677 | INFO     | pilot state: finished 
[2025-11-27 18:43:41] 2025-11-27 17:42:35,677 | INFO     | transexitcode: 0
[2025-11-27 18:43:41] 2025-11-27 17:42:35,677 | INFO     | exeerrorcode: 0
[2025-11-27 18:43:41] 2025-11-27 17:42:35,677 | INFO     | exeerrordiag: 
[2025-11-27 18:43:41] 2025-11-27 17:42:35,677 | INFO     | exitcode: 0
[2025-11-27 18:43:41] 2025-11-27 17:42:35,677 | INFO     | exitmsg: OK
[2025-11-27 18:43:41] 2025-11-27 17:42:35,677 | INFO     | cpuconsumptiontime: 88734 s
[2025-11-27 18:43:41] 2025-11-27 17:42:35,677 | INFO     | nevents: 1000
[2025-11-27 18:43:41] 2025-11-27 17:42:35,677 | INFO     | neventsw: 0
[2025-11-27 18:43:41] 2025-11-27 17:42:35,677 | INFO     | pid: 2225509
[2025-11-27 18:43:41] 2025-11-27 17:42:35,677 | INFO     | pgrp: 2225509
[2025-11-27 18:43:41] 2025-11-27 17:42:35,677 | INFO     | corecount: 3
[2025-11-27 18:43:41] 2025-11-27 17:42:35,677 | INFO     | event service: False
[2025-11-27 18:43:41] 2025-11-27 17:42:35,677 | INFO     | sizes: {0: 2284318, 2: 2284580, 10: 2284608, 30024: 2324045, 30025: 2333101, 30032: 2333291}
[2025-11-27 18:43:41] 2025-11-27 17:42:35,677 | INFO     | --------------------------------------------------
[2025-11-27 18:43:41] 2025-11-27 17:42:35,677 | INFO     | 
[2025-11-27 18:43:41] 2025-11-27 17:42:35,677 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-11-27 18:43:41] 2025-11-27 17:42:35,688 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 18:43:41] 2025-11-27 17:42:35,689 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 18:43:41] 2025-11-27 17:42:35,689 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 18:43:41] 2025-11-27 17:42:35,689 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 18:43:41] 2025-11-27 17:42:35,689 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 18:43:41] 2025-11-27 17:42:35,689 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 18:43:41] 2025-11-27 17:42:35,689 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 18:43:41] 2025-11-27 17:42:35,689 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 18:43:41] 2025-11-27 17:42:35,689 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 18:43:41] 2025-11-27 17:42:35,689 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 18:43:41] 2025-11-27 17:42:35,689 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 18:43:41] 2025-11-27 17:42:35,689 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 18:43:41] 2025-11-27 17:42:35,689 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 18:43:41] 2025-11-27 17:42:35,689 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 18:43:41] 2025-11-27 17:42:35,689 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 18:43:41] 2025-11-27 17:42:35,689 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 18:43:41] 2025-11-27 17:42:35,689 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 18:43:41] 2025-11-27 17:42:35,689 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 18:43:41] 2025-11-27 17:42:35,689 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 18:43:41] 2025-11-27 17:42:35,689 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 18:43:41] 2025-11-27 17:42:35,689 | INFO     | job 6895337186 has completed (purged errors)
[2025-11-27 18:43:41] 2025-11-27 17:42:35,689 | INFO     | overall cleanup function is called
[2025-11-27 18:43:41] 2025-11-27 17:42:36,697 | INFO     | --- collectZombieJob: --- 10, [2225509]
[2025-11-27 18:43:41] 2025-11-27 17:42:36,697 | INFO     | zombie collector waiting for pid 2225509
[2025-11-27 18:43:41] 2025-11-27 17:42:36,697 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 18:43:41] 2025-11-27 17:42:36,698 | INFO     | collected zombie processes
[2025-11-27 18:43:41] 2025-11-27 17:42:36,698 | INFO     | will attempt to kill all subprocesses of pid=2225509
[2025-11-27 18:43:41] 2025-11-27 17:42:36,749 | INFO     | process IDs to be killed: [2225509] (in reverse order)
[2025-11-27 18:43:41] 2025-11-27 17:42:36,776 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 18:43:41] 2025-11-27 17:42:36,776 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 18:43:41] 2025-11-27 17:42:36,777 | INFO     | did not find any defunct processes belonging to 2225509
[2025-11-27 18:43:41] 2025-11-27 17:42:36,779 | INFO     | did not find any defunct processes belonging to 2225509
[2025-11-27 18:43:41] 2025-11-27 17:42:36,779 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 18:43:41] 2025-11-27 17:42:36,779 | INFO     | ready for new job
[2025-11-27 18:43:41] 2025-11-27 17:42:36,779 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 18:43:41] 2025-11-27 17:42:36,780 | INFO     | ***************************************
[2025-11-27 18:43:41] 2025-11-27 17:42:36,780 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 18:43:41] 2025-11-27 17:42:36,780 | INFO     | ***************************************
[2025-11-27 18:43:41] 2025-11-27 17:42:36,780 | INFO     | 
[2025-11-27 18:43:41] 2025-11-27 17:42:36,781 | INFO     | architecture information:
[2025-11-27 18:43:41] 2025-11-27 17:42:36,781 | INFO     | executing command: cat /etc/os-release
[2025-11-27 18:43:41] 2025-11-27 17:42:36,789 | INFO     | cat /etc/os-release:
[2025-11-27 18:43:41] NAME="CentOS Linux"
[2025-11-27 18:43:41] VERSION="7 (Core)"
[2025-11-27 18:43:41] ID="centos"
[2025-11-27 18:43:41] ID_LIKE="rhel fedora"
[2025-11-27 18:43:41] VERSION_ID="7"
[2025-11-27 18:43:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 18:43:41] ANSI_COLOR="0;31"
[2025-11-27 18:43:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 18:43:41] HOME_URL="https://www.centos.org/"
[2025-11-27 18:43:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 18:43:41] 
[2025-11-27 18:43:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 18:43:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 18:43:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 18:43:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 18:43:41] 
[2025-11-27 18:43:41] 2025-11-27 17:42:36,790 | INFO     | ***************************************
[2025-11-27 18:43:41] 2025-11-27 17:42:37,293 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 18:43:41] 2025-11-27 17:42:37,306 | INFO     | sufficient remaining disk space (241995612160 B)
[2025-11-27 18:43:41] 2025-11-27 17:42:37,306 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 18:43:41] 2025-11-27 17:42:37,306 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 18:43:41] 2025-11-27 17:42:37,306 | INFO     | update_server=False
[2025-11-27 18:43:41] 2025-11-27 17:42:37,306 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 18:43:41] 2025-11-27 17:42:37,306 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 18:43:41] 2025-11-27 17:42:37,306 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:43:41] 2025-11-27 17:42:37,330 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 18:43:41] 2025-11-27 17:42:37,330 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 18:43:41] 2025-11-27 17:42:37,331 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:43:41] 2025-11-27 17:42:37,331 | INFO     | will abort loop
[2025-11-27 18:43:41] 2025-11-27 17:42:37,341 | INFO     | all job control threads have been joined
[2025-11-27 18:43:41] 2025-11-27 17:42:37,347 | INFO     | all payload control threads have been joined
[2025-11-27 18:43:41] 2025-11-27 17:42:38,051 | INFO     | all data control threads have been joined
[2025-11-27 18:43:41] 2025-11-27 17:42:38,310 | INFO     | [job] queue monitor thread has finished
[2025-11-27 18:43:41] 2025-11-27 17:42:38,311 | INFO     | [job] retrieve thread has finished
[2025-11-27 18:43:41] 2025-11-27 17:42:38,336 | INFO     | [job] job monitor thread has finished
[2025-11-27 18:43:41] 2025-11-27 17:42:38,347 | INFO     | [job] control thread has finished
[2025-11-27 18:43:41] 2025-11-27 17:42:38,352 | INFO     | [payload] control thread has finished
[2025-11-27 18:43:41] 2025-11-27 17:42:38,877 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 18:43:41] 2025-11-27 17:42:38,954 | INFO     | [data] copytool_in thread has finished
[2025-11-27 18:43:41] 2025-11-27 17:42:39,056 | INFO     | [data] control thread has finished
[2025-11-27 18:43:41] 2025-11-27 17:42:39,085 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 18:43:41] 2025-11-27 17:42:39,089 | INFO     | [job] validate thread has finished
[2025-11-27 18:43:41] 2025-11-27 17:42:39,312 | INFO     | [data] copytool_out thread has finished
[2025-11-27 18:43:41] 2025-11-27 17:42:39,342 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 18:43:41] 2025-11-27 17:42:39,427 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 18:43:41] 2025-11-27 17:42:39,605 | INFO     | [payload] validate_post thread has finished
[2025-11-27 18:43:41] 2025-11-27 17:42:39,854 | INFO     | [payload] failed_post thread has finished
[2025-11-27 18:43:41] 2025-11-27 17:42:43,349 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 18:43:41] 2025-11-27 17:42:48,092 | INFO     | job.realtimelogging is not enabled
[2025-11-27 18:43:41] 2025-11-27 17:42:49,098 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 18:43:41] 2025-11-27 17:43:08,262 | INFO     | PID=2219034 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 18:43:41] 2025-11-27 17:43:08,262 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 18:43:41] 2025-11-27 17:43:08,262 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 18:43:41] 2025-11-27 17:43:08,262 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 18:43:41] 2025-11-27 17:43:34,919 | INFO     | [monitor] cgroup control has ended
[2025-11-27 18:43:41] 2025-11-27 17:43:35,893 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140058567911232)>', '<ExcThread(monitor, started 140057910425344)>']
[2025-11-27 18:43:41] 2025-11-27 17:43:36,406 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 18:43:41] 2025-11-27 17:43:36,407 | INFO     | [monitor] control thread has ended
[2025-11-27 18:43:41] 2025-11-27 17:43:40,915 | INFO     | all workflow threads have been joined
[2025-11-27 18:43:41] 2025-11-27 17:43:40,915 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 18:43:41] 2025-11-27 17:43:40,916 | INFO     | traces error code: 0
[2025-11-27 18:43:41] 2025-11-27 17:43:40,916 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 18:43:41] 2025-11-27 17:43:40,967 [wrapper] ==== pilot stdout END ====
[2025-11-27 18:43:41] 2025-11-27 17:43:40,970 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 18:43:41] 2025-11-27 17:43:40,972 [wrapper] pilotpid: 2219034
[2025-11-27 18:43:41] 2025-11-27 17:43:40,975 [wrapper] Pilot exit status: 0
[2025-11-27 18:43:41] 2025-11-27 17:43:40,982 [wrapper] pandaids: 6895337186 6895337186
[2025-11-27 18:43:41] 2025-11-27 17:43:41,001 [wrapper] cleanup supervisor_pilot 2292932 2219035
[2025-11-27 18:43:41] 2025-11-27 17:43:41,003 [wrapper] Test setup, not cleaning
[2025-11-27 18:43:41] 2025-11-27 17:43:41,005 [wrapper] apfmon messages muted
[2025-11-27 18:43:41] 2025-11-27 17:43:41,008 [wrapper] ==== wrapper stdout END ====
[2025-11-27 18:43:41] 2025-11-27 17:43:41,010 [wrapper] ==== wrapper stderr END ====
[2025-11-27 18:43:41]  *** Error codes and diagnostics ***
[2025-11-27 18:43:41]     "exeErrorCode": 0,
[2025-11-27 18:43:41]     "exeErrorDiag": "",
[2025-11-27 18:43:41]     "pilotErrorCode": 0,
[2025-11-27 18:43:41]     "pilotErrorDiag": "",
[2025-11-27 18:43:41]  *** Listing of results directory ***
[2025-11-27 18:43:41] total 1714256
[2025-11-27 18:43:41] drwx------ 5 boinc boinc      4096 Nov  5 18:16 pilot3
[2025-11-27 18:43:41] -rw-r--r-- 1 boinc boinc    576529 Nov 22 06:57 pilot3.tar.gz
[2025-11-27 18:43:41] -rwx------ 1 boinc boinc     36292 Nov 22 07:00 runpilot2-wrapper.sh
[2025-11-27 18:43:41] -rw-r--r-- 1 boinc boinc      5112 Nov 22 07:00 queuedata.json
[2025-11-27 18:43:41] -rw-r--r-- 1 boinc boinc       100 Nov 27 03:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 18:43:41] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 03:18 run_atlas
[2025-11-27 18:43:41] -rw-r--r-- 1 boinc boinc       105 Nov 27 03:18 job.xml
[2025-11-27 18:43:41] -rw-r--r-- 3 boinc boinc 409828250 Nov 27 03:18 EVNT.47483658._000290.pool.root.1
[2025-11-27 18:43:41] -rw-r--r-- 3 boinc boinc 409828250 Nov 27 03:18 ATLAS.root_0
[2025-11-27 18:43:41] drwxrwx--x 2 boinc boinc      4096 Nov 27 03:18 shared
[2025-11-27 18:43:41] -rw-r--r-- 2 boinc boinc    590093 Nov 27 03:18 input.tar.gz
[2025-11-27 18:43:41] -rw-r--r-- 2 boinc boinc     15847 Nov 27 03:18 start_atlas.sh
[2025-11-27 18:43:41] -rw-r--r-- 1 boinc boinc         0 Nov 27 03:18 boinc_setup_complete
[2025-11-27 18:43:41] -rw-r--r-- 1 boinc boinc         0 Nov 27 03:18 boinc_lockfile
[2025-11-27 18:43:41] -rw-r--r-- 1 boinc boinc      6448 Nov 27 10:21 init_data.xml
[2025-11-27 18:43:41] -rw-r--r-- 1 boinc boinc      2786 Nov 27 10:21 pandaJob.out
[2025-11-27 18:43:41] -rw------- 1 boinc boinc    991551 Nov 27 10:21 agis_schedconf.cvmfs.json
[2025-11-27 18:43:41] -rw-r--r-- 1 boinc boinc       532 Nov 27 18:38 boinc_task_state.xml
[2025-11-27 18:43:41] -rw------- 1 boinc boinc 921003466 Nov 27 18:42 HITS.47556137._002864.pool.root.1
[2025-11-27 18:43:41] -rw------- 1 boinc boinc      1039 Nov 27 18:42 memory_monitor_summary.json
[2025-11-27 18:43:41] -rw------- 1 boinc boinc   1516240 Nov 27 18:42 agis_ddmendpoints.agis.ALL.json
[2025-11-27 18:43:41] -rw------- 1 boinc boinc   1186755 Nov 27 18:42 log.47556137._002864.job.log.tgz.1
[2025-11-27 18:43:41] -rw------- 1 boinc boinc      8600 Nov 27 18:42 heartbeat.json
[2025-11-27 18:43:41] -rw------- 1 boinc boinc        96 Nov 27 18:43 pilot_heartbeat.json
[2025-11-27 18:43:41] -rw-r--r-- 1 boinc boinc        29 Nov 27 18:43 wrapper_checkpoint.txt
[2025-11-27 18:43:41] -rw-r--r-- 1 boinc boinc      8192 Nov 27 18:43 boinc_mmap_file
[2025-11-27 18:43:41] -rw------- 1 boinc boinc      5010 Nov 27 18:43 pilotlog.txt
[2025-11-27 18:43:41] -rw------- 1 boinc boinc   4221505 Nov 27 18:43 log.47556137._002864.job.log.1
[2025-11-27 18:43:41] -rw------- 1 boinc boinc       353 Nov 27 18:43 output.list
[2025-11-27 18:43:41] -rw-r--r-- 1 boinc boinc       620 Nov 27 18:43 runtime_log
[2025-11-27 18:43:41] -rw------- 1 boinc boinc   5427200 Nov 27 18:43 result.tar.gz
[2025-11-27 18:43:41] -rw-r--r-- 1 boinc boinc      8983 Nov 27 18:43 runtime_log.err
[2025-11-27 18:43:41] -rw------- 1 boinc boinc       797 Nov 27 18:43 V6wKDmSqvg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmy0JKDm6xkWun.diag
[2025-11-27 18:43:41] -rw-r--r-- 1 boinc boinc     23299 Nov 27 18:43 stderr.txt
[2025-11-27 18:43:41] HITS file was successfully produced:
[2025-11-27 18:43:41] -rw------- 1 boinc boinc 921003466 Nov 27 18:42 shared/HITS.pool.root.1
[2025-11-27 18:43:41]  *** Contents of shared directory: ***
[2025-11-27 18:43:41] total 1305548
[2025-11-27 18:43:41] -rw-r--r-- 3 boinc boinc 409828250 Nov 27 03:18 ATLAS.root_0
[2025-11-27 18:43:41] -rw-r--r-- 2 boinc boinc    590093 Nov 27 03:18 input.tar.gz
[2025-11-27 18:43:41] -rw-r--r-- 2 boinc boinc     15847 Nov 27 03:18 start_atlas.sh
[2025-11-27 18:43:41] -rw------- 1 boinc boinc 921003466 Nov 27 18:42 HITS.pool.root.1
[2025-11-27 18:43:41] -rw------- 1 boinc boinc   5427200 Nov 27 18:43 result.tar.gz
18:43:42 (2214989): run_atlas exited; CPU time 88796.126482
18:43:42 (2214989): called boinc_finish(0)

</stderr_txt>
]]>

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