Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:31:19 (3432806): wrapper (7.7.26015): starting
16:31:19 (3432806): wrapper: running run_atlas (--nthreads 3)
[2025-11-23 16:31:19] Arguments: --nthreads 3
[2025-11-23 16:31:19] Threads: 3
[2025-11-23 16:31:19] Checking for CVMFS
[2025-11-23 16:31:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 16:31:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 16:31:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 16:31:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 16:31:19] 2.9.2.0 2932062 343 69316 153213 1 88 34867334 36864001 0 130560 0 1477086 99.998 14502 20058 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-23 16:31:19] CVMFS is ok
[2025-11-23 16:31:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 16:31:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 16:31:19] Further information can be found at the LHC@home message board.
[2025-11-23 16:31:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 16:31:19] Checking for apptainer binary...
[2025-11-23 16:31:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 16:31:19] Running /usr/bin/apptainer --version
[2025-11-23 16:31:19] apptainer version 1.4.1-1.1
[2025-11-23 16:31:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 16:31:20] thA335
[2025-11-23 16:31:20] apptainer works
[2025-11-23 16:31:20] Set ATHENA_PROC_NUMBER=3
[2025-11-23 16:31:20] Set ATHENA_CORE_NUMBER=3
[2025-11-23 16:31:20] Starting ATLAS job with PandaID=6894245895
[2025-11-23 16:31:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 16:35:36]  *** The last 200 lines of the pilot log: ***
[2025-11-23 16:35:36] 2025-11-23 15:34:41,286 | INFO     | architecture information:
[2025-11-23 16:35:36] 2025-11-23 15:34:41,287 | INFO     | executing command: cat /etc/os-release
[2025-11-23 16:35:36] 2025-11-23 15:34:41,310 | INFO     | cat /etc/os-release:
[2025-11-23 16:35:36] NAME="CentOS Linux"
[2025-11-23 16:35:36] VERSION="7 (Core)"
[2025-11-23 16:35:36] ID="centos"
[2025-11-23 16:35:36] ID_LIKE="rhel fedora"
[2025-11-23 16:35:36] VERSION_ID="7"
[2025-11-23 16:35:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 16:35:36] ANSI_COLOR="0;31"
[2025-11-23 16:35:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 16:35:36] HOME_URL="https://www.centos.org/"
[2025-11-23 16:35:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 16:35:36] 
[2025-11-23 16:35:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 16:35:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 16:35:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 16:35:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 16:35:36] 
[2025-11-23 16:35:36] 2025-11-23 15:34:41,310 | INFO     | ***************************************
[2025-11-23 16:35:36] 2025-11-23 15:34:41,814 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-23 16:35:36] 2025-11-23 15:34:41,827 | INFO     | sufficient remaining disk space (826761281536 B)
[2025-11-23 16:35:36] 2025-11-23 15:34:41,828 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 16:35:36] 2025-11-23 15:34:41,828 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 16:35:36] 2025-11-23 15:34:41,828 | INFO     | update_server=False
[2025-11-23 16:35:36] 2025-11-23 15:34:41,828 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 16:35:36] 2025-11-23 15:34:41,828 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 16:35:36] 2025-11-23 15:34:41,828 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-23 16:35:36] 2025-11-23 15:34:41,828 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 16:35:36] 2025-11-23 15:34:41,828 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 16:35:36] 2025-11-23 15:34:41,828 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 16:35:36] 2025-11-23 15:34:42,008 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 16:35:36] 2025-11-23 15:34:42,009 | INFO     | aborting loop
[2025-11-23 16:35:36] 2025-11-23 15:34:42,543 | INFO     | all data control threads have been joined
[2025-11-23 16:35:36] 2025-11-23 15:34:42,834 | INFO     | [job] queue monitor thread has finished
[2025-11-23 16:35:36] 2025-11-23 15:34:42,835 | INFO     | [job] retrieve thread has finished
[2025-11-23 16:35:36] 2025-11-23 15:34:42,855 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 16:35:36] 2025-11-23 15:34:43,014 | INFO     | [job] job monitor thread has finished
[2025-11-23 16:35:36] 2025-11-23 15:34:43,060 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 16:35:36] 2025-11-23 15:34:43,182 | INFO     | all payload control threads have been joined
[2025-11-23 16:35:36] 2025-11-23 15:34:43,285 | INFO     | all job control threads have been joined
[2025-11-23 16:35:36] 2025-11-23 15:34:43,327 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 16:35:36] 2025-11-23 15:34:43,370 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 16:35:36] 2025-11-23 15:34:43,456 | INFO     | [data] copytool_in thread has finished
[2025-11-23 16:35:36] 2025-11-23 15:34:43,549 | INFO     | [data] control thread has finished
[2025-11-23 16:35:36] 2025-11-23 15:34:43,604 | INFO     | [payload] validate_post thread has finished
[2025-11-23 16:35:36] 2025-11-23 15:34:43,738 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 16:35:36] 2025-11-23 15:34:44,188 | INFO     | [payload] control thread has finished
[2025-11-23 16:35:36] 2025-11-23 15:34:44,217 | INFO     | [job] validate thread has finished
[2025-11-23 16:35:36] 2025-11-23 15:34:44,291 | INFO     | [job] control thread has finished
[2025-11-23 16:35:36] 2025-11-23 15:34:44,303 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 16:35:36] 2025-11-23 15:34:44,314 | INFO     | [payload] failed_post thread has finished
[2025-11-23 16:35:36] 2025-11-23 15:34:45,334 | INFO     | [data] copytool_out thread has finished
[2025-11-23 16:35:36] 2025-11-23 15:34:47,377 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 16:35:36] 2025-11-23 15:35:30,473 | INFO     | [monitor] cgroup control has ended
[2025-11-23 16:35:36] 2025-11-23 15:35:31,427 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140563736856384)>', '<ExcThread(monitor, started 140563240171264)>']
[2025-11-23 16:35:36] 2025-11-23 15:35:32,090 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 16:35:36] 2025-11-23 15:35:32,090 | INFO     | [monitor] control thread has ended
[2025-11-23 16:35:36] 2025-11-23 15:35:36,453 | INFO     | all workflow threads have been joined
[2025-11-23 16:35:36] 2025-11-23 15:35:36,454 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 16:35:36] 2025-11-23 15:35:36,454 | INFO     | traces error code: 0
[2025-11-23 16:35:36] 2025-11-23 15:35:36,455 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 16:35:36] 2025-11-23 15:35:36,501 [wrapper] ==== pilot stdout END ====
[2025-11-23 16:35:36] 2025-11-23 15:35:36,504 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 16:35:36] 2025-11-23 15:35:36,507 [wrapper] pilotpid: 3436540
[2025-11-23 16:35:36] 2025-11-23 15:35:36,510 [wrapper] Pilot exit status: 0
[2025-11-23 16:35:36] 2025-11-23 15:35:36,517 [wrapper] pandaids: 6894245895
[2025-11-23 16:35:36] 2025-11-23 15:35:36,535 [wrapper] cleanup supervisor_pilot 3436546 3436541
[2025-11-23 16:35:36] 2025-11-23 15:35:36,538 [wrapper] Test setup, not cleaning
[2025-11-23 16:35:36] 2025-11-23 15:35:36,541 [wrapper] apfmon messages muted
[2025-11-23 16:35:36] 2025-11-23 15:35:36,543 [wrapper] ==== wrapper stdout END ====
[2025-11-23 16:35:36] 2025-11-23 15:35:36,545 [wrapper] ==== wrapper stderr END ====
[2025-11-23 16:35:36]  *** Error codes and diagnostics ***
[2025-11-23 16:35:36]     "exeErrorCode": 65,
[2025-11-23 16:35:36]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-23 16:35:36]     "pilotErrorCode": 1305,
[2025-11-23 16:35:36]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-23 16:35:36]  *** Listing of results directory ***
[2025-11-23 16:35:36] total 402908
[2025-11-23 16:35:36] -rw-r--r-- 1 boinc boinc    576529 Nov 21 02:08 pilot3.tar.gz
[2025-11-23 16:35:36] -rwx------ 1 boinc boinc     36292 Nov 21 02:24 runpilot2-wrapper.sh
[2025-11-23 16:35:36] -rw-r--r-- 1 boinc boinc      5112 Nov 21 02:24 queuedata.json
[2025-11-23 16:35:36] -rw-r--r-- 1 boinc boinc       100 Nov 23 16:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 16:35:36] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 16:31 run_atlas
[2025-11-23 16:35:36] -rw-r--r-- 1 boinc boinc       105 Nov 23 16:31 job.xml
[2025-11-23 16:35:36] -rw-r--r-- 2 boinc boinc 408380354 Nov 23 16:31 EVNT.47493127._002087.pool.root.1
[2025-11-23 16:35:36] -rw-r--r-- 2 boinc boinc    590101 Nov 23 16:31 input.tar.gz
[2025-11-23 16:35:36] -rw-r--r-- 2 boinc boinc     15847 Nov 23 16:31 start_atlas.sh
[2025-11-23 16:35:36] drwxrwx--x 2 boinc boinc      4096 Nov 23 16:31 shared
[2025-11-23 16:35:36] -rw-r--r-- 1 boinc boinc         0 Nov 23 16:31 boinc_setup_complete
[2025-11-23 16:35:36] -rw-r--r-- 1 boinc boinc      6194 Nov 23 16:31 init_data.xml
[2025-11-23 16:35:36] -rw-r--r-- 1 boinc boinc         0 Nov 23 16:31 boinc_lockfile
[2025-11-23 16:35:36] -rw-r--r-- 1 boinc boinc      2785 Nov 23 16:31 pandaJob.out
[2025-11-23 16:35:36] -rw------- 1 boinc boinc    989785 Nov 23 16:31 agis_schedconf.cvmfs.json
[2025-11-23 16:35:36] -rw------- 1 boinc boinc   1526164 Nov 23 16:31 agis_ddmendpoints.agis.ALL.json
[2025-11-23 16:35:36] drwx------ 5 boinc boinc      4096 Nov 23 16:31 pilot3
[2025-11-23 16:35:36] -rw-r--r-- 1 boinc boinc       523 Nov 23 16:32 boinc_task_state.xml
[2025-11-23 16:35:36] -rw------- 1 boinc boinc       967 Nov 23 16:32 memory_monitor_summary.json
[2025-11-23 16:35:36] -rw------- 1 boinc boinc     55711 Nov 23 16:32 log.47533967._000586.job.log.tgz.1
[2025-11-23 16:35:36] -rw------- 1 boinc boinc        95 Nov 23 16:34 pilot_heartbeat.json
[2025-11-23 16:35:36] -rw------- 1 boinc boinc      8383 Nov 23 16:34 heartbeat.json
[2025-11-23 16:35:36] -rw-r--r-- 1 boinc boinc        22 Nov 23 16:35 wrapper_checkpoint.txt
[2025-11-23 16:35:36] -rw-r--r-- 1 boinc boinc      8192 Nov 23 16:35 boinc_mmap_file
[2025-11-23 16:35:36] -rw------- 1 boinc boinc      4556 Nov 23 16:35 pilotlog.txt
[2025-11-23 16:35:36] -rw------- 1 boinc boinc     91456 Nov 23 16:35 log.47533967._000586.job.log.1
[2025-11-23 16:35:36] -rw------- 1 boinc boinc       186 Nov 23 16:35 output.list
[2025-11-23 16:35:36] -rw-r--r-- 1 boinc boinc       620 Nov 23 16:35 runtime_log
[2025-11-23 16:35:36] -rw------- 1 boinc boinc    163840 Nov 23 16:35 result.tar.gz
[2025-11-23 16:35:36] -rw-r--r-- 1 boinc boinc      8744 Nov 23 16:35 runtime_log.err
[2025-11-23 16:35:36] -rw------- 1 boinc boinc       649 Nov 23 16:35 GL6KDmZ4Ug8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmKoIKDmCBiUZm.diag
[2025-11-23 16:35:36] -rw-r--r-- 1 boinc boinc      9267 Nov 23 16:35 stderr.txt
[2025-11-23 16:35:36] No HITS result produced
[2025-11-23 16:35:36]  *** Contents of shared directory: ***
[2025-11-23 16:35:36] total 399572
[2025-11-23 16:35:36] -rw-r--r-- 2 boinc boinc 408380354 Nov 23 16:31 ATLAS.root_0
[2025-11-23 16:35:36] -rw-r--r-- 2 boinc boinc    590101 Nov 23 16:31 input.tar.gz
[2025-11-23 16:35:36] -rw-r--r-- 2 boinc boinc     15847 Nov 23 16:31 start_atlas.sh
[2025-11-23 16:35:36] -rw------- 1 boinc boinc    163840 Nov 23 16:35 result.tar.gz
16:35:38 (3432806): run_atlas exited; CPU time 30.574673
16:35:38 (3432806): called boinc_finish(0)

</stderr_txt>
]]>

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