Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:35:56 (1318): wrapper (7.7.26015): starting
10:35:56 (1318): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 10:35:56] Arguments: --nthreads 8
[2025-11-23 10:35:56] Threads: 8
[2025-11-23 10:35:56] Checking for CVMFS
[2025-11-23 10:35:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 10:35:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 10:35:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 10:35:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 10:35:56] 2.11.2.0 6491 4814 65988 153213 1 82 11203652 18432000 1885 130560 0 4332564 99.992 171451 12545 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 10:35:56] CVMFS is ok
[2025-11-23 10:35:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 10:35:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 10:35:56] Further information can be found at the LHC@home message board.
[2025-11-23 10:35:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 10:35:56] Checking for apptainer binary...
[2025-11-23 10:35:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 10:35:56] Running /usr/bin/apptainer --version
[2025-11-23 10:35:56] apptainer version 1.3.2-1.el7
[2025-11-23 10:35:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 10:35:57] c-206-29.aglt2.org
[2025-11-23 10:35:57] apptainer works
[2025-11-23 10:35:57] Set ATHENA_PROC_NUMBER=8
[2025-11-23 10:35:57] Set ATHENA_CORE_NUMBER=8
[2025-11-23 10:35:57] Starting ATLAS job with PandaID=6895325341
[2025-11-23 10:35:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:12:51 (16601): wrapper (7.7.26015): starting
18:12:51 (16601): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 18:12:51] Arguments: --nthreads 8
[2025-11-23 18:12:51] Threads: 8
[2025-11-23 18:12:51] This job has been restarted, cleaning up previous attempt
[2025-11-23 18:12:51] Checking for CVMFS
[2025-11-23 18:12:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 18:12:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 18:12:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 18:12:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 18:12:51] 2.11.2.0 6491 5271 62480 153225 1 1 11250821 18432001 1 130560 0 4697628 99.992 187303 13266 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 18:12:51] CVMFS is ok
[2025-11-23 18:12:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 18:12:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 18:12:51] Further information can be found at the LHC@home message board.
[2025-11-23 18:12:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 18:12:51] Checking for apptainer binary...
[2025-11-23 18:12:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 18:12:51] Running /usr/bin/apptainer --version
[2025-11-23 18:12:51] apptainer version 1.3.2-1.el7
[2025-11-23 18:12:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 18:12:52] c-206-29.aglt2.org
[2025-11-23 18:12:52] apptainer works
[2025-11-23 18:12:52] Set ATHENA_PROC_NUMBER=8
[2025-11-23 18:12:52] Set ATHENA_CORE_NUMBER=8
[2025-11-23 18:12:52] Starting ATLAS job with PandaID=6895325341
[2025-11-23 18:12:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 14:19:29]  *** The last 200 lines of the pilot log: ***
[2025-11-24 14:19:29] 2025-11-24 19:18:55,689 | INFO     | monitor loop #5146: job 0:6895325341 is in state 'finished'
[2025-11-24 14:19:29] 2025-11-24 19:18:55,690 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 14:19:29] 2025-11-24 19:18:57,145 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 14:19:29] 2025-11-24 19:18:57,148 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 1840.0416666666667
[2025-11-24 14:19:29] 2025-11-24 19:18:57,151 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895325341/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 14:19:29] 2025-11-24 19:18:57,151 | INFO     | extracted standard info from prmon json
[2025-11-24 14:19:29] 2025-11-24 19:18:57,151 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 14:19:29] 2025-11-24 19:18:57,152 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 14:19:29] 2025-11-24 19:18:57,167 | INFO     | fitting pss+swap vs Time
[2025-11-24 14:19:29] 2025-11-24 19:18:57,168 | INFO     | sum of square deviations: 517286739895.06586
[2025-11-24 14:19:29] 2025-11-24 19:18:57,194 | INFO     | sum of deviations: 2454194900210.521
[2025-11-24 14:19:29] 2025-11-24 19:18:57,194 | INFO     | mean x: 1763975755.32715
[2025-11-24 14:19:29] 2025-11-24 19:18:57,194 | INFO     | mean y: 2861534.570826307
[2025-11-24 14:19:29] 2025-11-24 19:18:57,194 | INFO     | intersect: -8366075785.757704
[2025-11-24 14:19:29] 2025-11-24 19:18:57,195 | INFO     | chi2: 5.6947862828317035
[2025-11-24 14:19:29] 2025-11-24 19:18:57,196 | INFO     | sum of square deviations: 510772154154.13
[2025-11-24 14:19:29] 2025-11-24 19:18:57,222 | INFO     | sum of deviations: 2798804886635.4155
[2025-11-24 14:19:29] 2025-11-24 19:18:57,222 | INFO     | mean x: 1763975602.830652
[2025-11-24 14:19:29] 2025-11-24 19:18:57,222 | INFO     | mean y: 2869595.4470787467
[2025-11-24 14:19:29] 2025-11-24 19:18:57,222 | INFO     | intersect: -9662934417.076069
[2025-11-24 14:19:29] 2025-11-24 19:18:57,223 | INFO     | chi2: 3.0612287588058704
[2025-11-24 14:19:29] 2025-11-24 19:18:57,223 | INFO     | current chi2=3.0612287588058704 (change=46.24506334794903 %)
[2025-11-24 14:19:29] 2025-11-24 19:18:57,224 | INFO     | sum of square deviations: 504312499675.66504
[2025-11-24 14:19:29] 2025-11-24 19:18:57,249 | INFO     | sum of deviations: 2949877613132.7305
[2025-11-24 14:19:29] 2025-11-24 19:18:57,249 | INFO     | mean x: 1763975450.3341837
[2025-11-24 14:19:29] 2025-11-24 19:18:57,249 | INFO     | mean y: 2873160.606292517
[2025-11-24 14:19:29] 2025-11-24 19:18:57,249 | INFO     | intersect: -10315157216.19982
[2025-11-24 14:19:29] 2025-11-24 19:18:57,250 | INFO     | chi2: 2.473362405759062
[2025-11-24 14:19:29] 2025-11-24 19:18:57,250 | INFO     | current chi2=2.473362405759062 (change=19.20360741926795 %)
[2025-11-24 14:19:29] 2025-11-24 19:18:57,250 | INFO     | right removable region: 1175
[2025-11-24 14:19:29] 2025-11-24 19:18:57,251 | INFO     | sum of square deviations: 510771555744.1297
[2025-11-24 14:19:29] 2025-11-24 19:18:57,277 | INFO     | sum of deviations: 2160677498603.619
[2025-11-24 14:19:29] 2025-11-24 19:18:57,277 | INFO     | mean x: 1763975907.830652
[2025-11-24 14:19:29] 2025-11-24 19:18:57,277 | INFO     | mean y: 2868396.1430990687
[2025-11-24 14:19:29] 2025-11-24 19:18:57,277 | INFO     | intersect: -7459142769.6428995
[2025-11-24 14:19:29] 2025-11-24 19:18:57,278 | INFO     | chi2: 3.683183112924228
[2025-11-24 14:19:29] 2025-11-24 19:18:57,279 | INFO     | current chi2=3.683183112924228 (change=35.32359372241826 %)
[2025-11-24 14:19:29] 2025-11-24 19:18:57,280 | INFO     | sum of square deviations: 504311591266.3262
[2025-11-24 14:19:29] 2025-11-24 19:18:57,307 | INFO     | sum of deviations: 2065542336575.8801
[2025-11-24 14:19:29] 2025-11-24 19:18:57,307 | INFO     | mean x: 1763976060.3307824
[2025-11-24 14:19:29] 2025-11-24 19:18:57,307 | INFO     | mean y: 2870641.6275510206
[2025-11-24 14:19:29] 2025-11-24 19:18:57,307 | INFO     | intersect: -7221962767.754462
[2025-11-24 14:19:29] 2025-11-24 19:18:57,308 | INFO     | chi2: 3.5932948194797976
[2025-11-24 14:19:29] 2025-11-24 19:18:57,308 | INFO     | current chi2=3.5932948194797976 (change=2.4405056900107343 %)
[2025-11-24 14:19:29] 2025-11-24 19:18:57,308 | INFO     | left removable region: 20
[2025-11-24 14:19:29] 2025-11-24 19:18:57,310 | INFO     | sum of square deviations: 477775227722.0728
[2025-11-24 14:19:29] 2025-11-24 19:18:57,335 | INFO     | sum of deviations: 2433405787898.3247
[2025-11-24 14:19:29] 2025-11-24 19:18:57,335 | INFO     | mean x: 1763976029.8363636
[2025-11-24 14:19:29] 2025-11-24 19:18:57,336 | INFO     | mean y: 2886249.2874458875
[2025-11-24 14:19:29] 2025-11-24 19:18:57,336 | INFO     | intersect: -8981400150.79082
[2025-11-24 14:19:29] 2025-11-24 19:18:57,337 | INFO     | chi2: 0.25946761610144853
[2025-11-24 14:19:29] 2025-11-24 19:18:57,337 | INFO     | current memory leak: 5.09 B/s (using 1155 data points, chi2=0.26)
[2025-11-24 14:19:29] 2025-11-24 19:18:57,338 | INFO     | could have reported an average CPU frequency of 2568 MHz (43 samples)
[2025-11-24 14:19:29] 2025-11-24 19:18:57,338 | INFO     | ..............................
[2025-11-24 14:19:29] 2025-11-24 19:18:57,338 | INFO     | . Timing measurements:
[2025-11-24 14:19:29] 2025-11-24 19:18:57,338 | INFO     | . get job = 0 s
[2025-11-24 14:19:29] 2025-11-24 19:18:57,338 | INFO     | . initial setup = 2 s
[2025-11-24 14:19:29] 2025-11-24 19:18:57,338 | INFO     | . payload setup = 6 s
[2025-11-24 14:19:29] 2025-11-24 19:18:57,338 | INFO     | . stage-in = 0 s
[2025-11-24 14:19:29] 2025-11-24 19:18:57,339 | INFO     | . payload execution = 72314 s
[2025-11-24 14:19:29] 2025-11-24 19:18:57,339 | INFO     | . stage-out = 3 s
[2025-11-24 14:19:29] 2025-11-24 19:18:57,339 | INFO     | . log creation = 0 s
[2025-11-24 14:19:29] 2025-11-24 19:18:57,339 | INFO     | ..............................
[2025-11-24 14:19:29] 2025-11-24 19:18:57,423 | INFO     | 
[2025-11-24 14:19:29] 2025-11-24 19:18:57,423 | INFO     | job summary report
[2025-11-24 14:19:29] 2025-11-24 19:18:57,423 | INFO     | --------------------------------------------------
[2025-11-24 14:19:29] 2025-11-24 19:18:57,423 | INFO     | PanDA job id: 6895325341
[2025-11-24 14:19:29] 2025-11-24 19:18:57,423 | INFO     | task id: 47556137
[2025-11-24 14:19:29] 2025-11-24 19:18:57,424 | INFO     | errors: (none)
[2025-11-24 14:19:29] 2025-11-24 19:18:57,424 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 14:19:29] 2025-11-24 19:18:57,424 | INFO     | pilot state: finished 
[2025-11-24 14:19:29] 2025-11-24 19:18:57,424 | INFO     | transexitcode: 0
[2025-11-24 14:19:29] 2025-11-24 19:18:57,424 | INFO     | exeerrorcode: 0
[2025-11-24 14:19:29] 2025-11-24 19:18:57,424 | INFO     | exeerrordiag: 
[2025-11-24 14:19:29] 2025-11-24 19:18:57,424 | INFO     | exitcode: 0
[2025-11-24 14:19:29] 2025-11-24 19:18:57,424 | INFO     | exitmsg: OK
[2025-11-24 14:19:29] 2025-11-24 19:18:57,424 | INFO     | cpuconsumptiontime: 556186 s
[2025-11-24 14:19:29] 2025-11-24 19:18:57,424 | INFO     | nevents: 1000
[2025-11-24 14:19:29] 2025-11-24 19:18:57,425 | INFO     | neventsw: 0
[2025-11-24 14:19:29] 2025-11-24 19:18:57,425 | INFO     | pid: 14684
[2025-11-24 14:19:29] 2025-11-24 19:18:57,425 | INFO     | pgrp: 14684
[2025-11-24 14:19:29] 2025-11-24 19:18:57,425 | INFO     | corecount: 8
[2025-11-24 14:19:29] 2025-11-24 19:18:57,425 | INFO     | event service: False
[2025-11-24 14:19:29] 2025-11-24 19:18:57,425 | INFO     | sizes: {0: 2298632, 1: 2298831, 5: 2299093, 11: 2299149, 72324: 2357285, 72329: 2367070, 72331: 2367254, 72336: 2367500}
[2025-11-24 14:19:29] 2025-11-24 19:18:57,425 | INFO     | --------------------------------------------------
[2025-11-24 14:19:29] 2025-11-24 19:18:57,425 | INFO     | 
[2025-11-24 14:19:29] 2025-11-24 19:18:57,425 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-24 14:19:29] 2025-11-24 19:18:57,442 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 14:19:29] 2025-11-24 19:18:57,443 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 14:19:29] 2025-11-24 19:18:57,443 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 14:19:29] 2025-11-24 19:18:57,443 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 14:19:29] 2025-11-24 19:18:57,443 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 14:19:29] 2025-11-24 19:18:57,443 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 14:19:29] 2025-11-24 19:18:57,443 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 14:19:29] 2025-11-24 19:18:57,443 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 14:19:29] 2025-11-24 19:18:57,443 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 14:19:29] 2025-11-24 19:18:57,444 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 14:19:29] 2025-11-24 19:18:57,444 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 14:19:29] 2025-11-24 19:18:57,444 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 14:19:29] 2025-11-24 19:18:57,444 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 14:19:29] 2025-11-24 19:18:57,444 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 14:19:29] 2025-11-24 19:18:57,444 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 14:19:29] 2025-11-24 19:18:57,444 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 14:19:29] 2025-11-24 19:18:57,444 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 14:19:29] 2025-11-24 19:18:57,444 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 14:19:29] 2025-11-24 19:18:57,445 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 14:19:29] 2025-11-24 19:18:57,445 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 14:19:29] 2025-11-24 19:18:57,445 | INFO     | job 6895325341 has completed (purged errors)
[2025-11-24 14:19:29] 2025-11-24 19:18:57,445 | INFO     | overall cleanup function is called
[2025-11-24 14:19:29] 2025-11-24 19:18:58,458 | INFO     | --- collectZombieJob: --- 10, [14684]
[2025-11-24 14:19:29] 2025-11-24 19:18:58,458 | INFO     | zombie collector waiting for pid 14684
[2025-11-24 14:19:29] 2025-11-24 19:18:58,458 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 14:19:29] 2025-11-24 19:18:58,458 | INFO     | collected zombie processes
[2025-11-24 14:19:29] 2025-11-24 19:18:58,458 | INFO     | will attempt to kill all subprocesses of pid=14684
[2025-11-24 14:19:29] 2025-11-24 19:18:58,572 | INFO     | process IDs to be killed: [14684] (in reverse order)
[2025-11-24 14:19:29] 2025-11-24 19:18:58,617 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 14:19:29] 2025-11-24 19:18:58,617 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 14:19:29] 2025-11-24 19:18:58,620 | INFO     | did not find any defunct processes belonging to 14684
[2025-11-24 14:19:29] 2025-11-24 19:18:58,622 | INFO     | did not find any defunct processes belonging to 14684
[2025-11-24 14:19:29] 2025-11-24 19:18:58,624 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 14:19:29] 2025-11-24 19:18:58,624 | INFO     | ready for new job
[2025-11-24 14:19:29] 2025-11-24 19:18:58,624 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 14:19:29] 2025-11-24 19:18:58,628 | INFO     | ***************************************
[2025-11-24 14:19:29] 2025-11-24 19:18:58,628 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 14:19:29] 2025-11-24 19:18:58,628 | INFO     | ***************************************
[2025-11-24 14:19:29] 2025-11-24 19:18:58,628 | INFO     | 
[2025-11-24 14:19:29] 2025-11-24 19:18:58,629 | INFO     | architecture information:
[2025-11-24 14:19:29] 2025-11-24 19:18:58,641 | INFO     | executing command: cat /etc/os-release
[2025-11-24 14:19:29] 2025-11-24 19:18:58,652 | INFO     | cat /etc/os-release:
[2025-11-24 14:19:29] NAME="CentOS Linux"
[2025-11-24 14:19:29] VERSION="7 (Core)"
[2025-11-24 14:19:29] ID="centos"
[2025-11-24 14:19:29] ID_LIKE="rhel fedora"
[2025-11-24 14:19:29] VERSION_ID="7"
[2025-11-24 14:19:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 14:19:29] ANSI_COLOR="0;31"
[2025-11-24 14:19:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 14:19:29] HOME_URL="https://www.centos.org/"
[2025-11-24 14:19:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 14:19:29] 
[2025-11-24 14:19:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 14:19:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 14:19:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 14:19:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 14:19:29] 
[2025-11-24 14:19:29] 2025-11-24 19:18:58,652 | INFO     | ***************************************
[2025-11-24 14:19:29] 2025-11-24 19:18:59,155 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-24 14:19:29] 2025-11-24 19:18:59,169 | INFO     | sufficient remaining disk space (23565697024 B)
[2025-11-24 14:19:29] 2025-11-24 19:18:59,169 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 14:19:29] 2025-11-24 19:18:59,169 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 14:19:29] 2025-11-24 19:18:59,169 | INFO     | update_server=False
[2025-11-24 14:19:29] 2025-11-24 19:18:59,169 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 14:19:29] 2025-11-24 19:18:59,170 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 14:19:29] 2025-11-24 19:18:59,170 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 14:19:29] 2025-11-24 19:18:59,170 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 14:19:29] 2025-11-24 19:18:59,198 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 14:19:29] 2025-11-24 19:18:59,198 | INFO     | aborting loop
[2025-11-24 14:19:29] 2025-11-24 19:18:59,389 | INFO     | all payload control threads have been joined
[2025-11-24 14:19:29] 2025-11-24 19:18:59,786 | INFO     | all data control threads have been joined
[2025-11-24 14:19:29] 2025-11-24 19:19:00,174 | INFO     | [job] queue monitor thread has finished
[2025-11-24 14:19:29] 2025-11-24 19:19:00,175 | INFO     | [job] retrieve thread has finished
[2025-11-24 14:19:29] 2025-11-24 19:19:00,203 | INFO     | [job] job monitor thread has finished
[2025-11-24 14:19:29] 2025-11-24 19:19:00,395 | INFO     | [payload] control thread has finished
[2025-11-24 14:19:29] 2025-11-24 19:19:00,595 | INFO     | all job control threads have been joined
[2025-11-24 14:19:29] 2025-11-24 19:19:00,789 | INFO     | [data] control thread has finished
[2025-11-24 14:19:29] 2025-11-24 19:19:00,856 | INFO     | [data] copytool_in thread has finished
[2025-11-24 14:19:29] 2025-11-24 19:19:00,865 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 14:19:29] 2025-11-24 19:19:00,889 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 14:19:29] 2025-11-24 19:19:00,992 | INFO     | [job] validate thread has finished
[2025-11-24 14:19:29] 2025-11-24 19:19:01,160 | INFO     | [payload] validate_post thread has finished
[2025-11-24 14:19:29] 2025-11-24 19:19:01,176 | INFO     | [data] copytool_out thread has finished
[2025-11-24 14:19:29] 2025-11-24 19:19:01,288 | INFO     | [payload] failed_post thread has finished
[2025-11-24 14:19:29] 2025-11-24 19:19:01,601 | INFO     | [job] control thread has finished
[2025-11-24 14:19:29] 2025-11-24 19:19:01,676 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 14:19:29] 2025-11-24 19:19:03,176 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 14:19:29] 2025-11-24 19:19:05,746 | INFO     | [monitor] cgroup control has ended
[2025-11-24 14:19:29] 2025-11-24 19:19:09,357 | INFO     | job.realtimelogging is not enabled
[2025-11-24 14:19:29] 2025-11-24 19:19:10,363 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 14:19:29] 2025-11-24 19:19:10,566 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140371718108992)>', '<ExcThread(monitor, started 140371141064448)>']
[2025-11-24 14:19:29] 2025-11-24 19:19:15,571 | INFO     | all workflow threads have been joined
[2025-11-24 14:19:29] 2025-11-24 19:19:15,572 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 14:19:29] 2025-11-24 19:19:15,572 | INFO     | traces error code: 0
[2025-11-24 14:19:29] 2025-11-24 19:19:15,572 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 14:19:29] 2025-11-24 19:19:28,847 | INFO     | PID=27806 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 14:19:29] 2025-11-24 19:19:28,847 | INFO     | .. there are 3 such processes running
[2025-11-24 14:19:29] 2025-11-24 19:19:28,847 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 14:19:29] 2025-11-24 19:19:28,847 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 14:19:29] 2025-11-24 19:19:28,848 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 14:19:29] 2025-11-24 19:19:28,848 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 14:19:29] 2025-11-24 19:19:28,848 | INFO     | [monitor] control thread has ended
[2025-11-24 14:19:29] 2025-11-24 19:19:28,938 [wrapper] ==== pilot stdout END ====
[2025-11-24 14:19:29] 2025-11-24 19:19:28,942 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 14:19:29] 2025-11-24 19:19:28,945 [wrapper] pilotpid: 27806
[2025-11-24 14:19:29] 2025-11-24 19:19:28,948 [wrapper] Pilot exit status: 0
[2025-11-24 14:19:29] 2025-11-24 19:19:28,960 [wrapper] pandaids: 6895325341 6895325341
[2025-11-24 14:19:29] 2025-11-24 19:19:28,995 [wrapper] cleanup supervisor_pilot 23667 27808
[2025-11-24 14:19:29] 2025-11-24 19:19:28,999 [wrapper] Test setup, not cleaning
[2025-11-24 14:19:29] 2025-11-24 19:19:29,002 [wrapper] apfmon messages muted
[2025-11-24 14:19:29] 2025-11-24 19:19:29,005 [wrapper] ==== wrapper stdout END ====
[2025-11-24 14:19:29] 2025-11-24 19:19:29,008 [wrapper] ==== wrapper stderr END ====
[2025-11-24 14:19:29]  *** Error codes and diagnostics ***
[2025-11-24 14:19:29]     "exeErrorCode": 0,
[2025-11-24 14:19:29]     "exeErrorDiag": "",
[2025-11-24 14:19:29]     "pilotErrorCode": 0,
[2025-11-24 14:19:29]     "pilotErrorDiag": "",
[2025-11-24 14:19:29]  *** Listing of results directory ***
[2025-11-24 14:19:29] total 1707096
[2025-11-24 14:19:29] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-24 14:19:29] -rwx------ 1 boincer umatlas     36292 Nov 21 09:45 runpilot2-wrapper.sh
[2025-11-24 14:19:29] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 09:45 pilot3.tar.gz
[2025-11-24 14:19:29] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 09:45 queuedata.json
[2025-11-24 14:19:29] -rw-r--r-- 1 boincer umatlas       100 Nov 23 10:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 14:19:29] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 10:35 run_atlas
[2025-11-24 14:19:29] -rw-r--r-- 1 boincer umatlas       105 Nov 23 10:35 job.xml
[2025-11-24 14:19:29] -rw-r--r-- 3 boincer umatlas 407997339 Nov 23 10:35 EVNT.47483658._000034.pool.root.1
[2025-11-24 14:19:29] -rw-r--r-- 3 boincer umatlas 407997339 Nov 23 10:35 ATLAS.root_0
[2025-11-24 14:19:29] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 10:35 start_atlas.sh
[2025-11-24 14:19:29] drwxrwx--x 2 boincer umatlas      4096 Nov 23 10:35 shared
[2025-11-24 14:19:29] -rw-r--r-- 2 boincer umatlas    590097 Nov 23 10:35 input.tar.gz
[2025-11-24 14:19:29] -rw-r--r-- 1 boincer umatlas         0 Nov 23 10:35 boinc_lockfile
[2025-11-24 14:19:29] -rw-r--r-- 1 boincer umatlas      2784 Nov 23 18:12 pandaJob.out
[2025-11-24 14:19:29] -rw------- 1 boincer umatlas        57 Nov 23 18:12 setup.sh.local
[2025-11-24 14:19:29] -rw------- 1 boincer umatlas    989786 Nov 23 18:13 agis_schedconf.cvmfs.json
[2025-11-24 14:19:29] -rw-r--r-- 1 boincer umatlas       533 Nov 24 14:05 boinc_task_state.xml
[2025-11-24 14:19:29] -rw-r--r-- 1 boincer umatlas      5954 Nov 24 14:11 init_data.xml
[2025-11-24 14:19:29] -rw------- 1 boincer umatlas 903469810 Nov 24 14:18 HITS.47556137._000333.pool.root.1
[2025-11-24 14:19:29] -rw------- 1 boincer umatlas      1065 Nov 24 14:18 memory_monitor_summary.json
[2025-11-24 14:19:29] -rw------- 1 boincer umatlas        96 Nov 24 14:18 pilot_heartbeat.json
[2025-11-24 14:19:29] -rw------- 1 boincer umatlas   1516227 Nov 24 14:18 agis_ddmendpoints.agis.ALL.json
[2025-11-24 14:19:29] -rw------- 1 boincer umatlas   2336665 Nov 24 14:18 log.47556137._000333.job.log.tgz.1
[2025-11-24 14:19:29] -rw------- 1 boincer umatlas      8660 Nov 24 14:18 heartbeat.json
[2025-11-24 14:19:29] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 14:19 boinc_mmap_file
[2025-11-24 14:19:29] -rw-r--r-- 1 boincer umatlas        29 Nov 24 14:19 wrapper_checkpoint.txt
[2025-11-24 14:19:29] -rw------- 1 boincer umatlas       820 Nov 24 14:19 pilotlog.txt
[2025-11-24 14:19:29] -rw------- 1 boincer umatlas  10005095 Nov 24 14:19 log.47556137._000333.job.log.1
[2025-11-24 14:19:29] -rw------- 1 boincer umatlas       353 Nov 24 14:19 output.list
[2025-11-24 14:19:29] -rw-r--r-- 1 boincer umatlas       620 Nov 24 14:19 runtime_log
[2025-11-24 14:19:29] -rw------- 1 boincer umatlas  12359680 Nov 24 14:19 result.tar.gz
[2025-11-24 14:19:29] -rw-r--r-- 1 boincer umatlas      9428 Nov 24 14:19 runtime_log.err
[2025-11-24 14:19:29] -rw------- 1 boincer umatlas       793 Nov 24 14:19 fSOKDmBZhg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmMgHKDmyTSRom.diag
[2025-11-24 14:19:29] -rw-r--r-- 1 boincer umatlas     23419 Nov 24 14:19 stderr.txt
[2025-11-24 14:19:29] HITS file was successfully produced:
[2025-11-24 14:19:29] -rw------- 1 boincer umatlas 903469810 Nov 24 14:18 shared/HITS.pool.root.1
[2025-11-24 14:19:29]  *** Contents of shared directory: ***
[2025-11-24 14:19:29] total 1293408
[2025-11-24 14:19:29] -rw-r--r-- 3 boincer umatlas 407997339 Nov 23 10:35 ATLAS.root_0
[2025-11-24 14:19:29] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 10:35 start_atlas.sh
[2025-11-24 14:19:29] -rw-r--r-- 2 boincer umatlas    590097 Nov 23 10:35 input.tar.gz
[2025-11-24 14:19:29] -rw------- 1 boincer umatlas 903469810 Nov 24 14:18 HITS.pool.root.1
[2025-11-24 14:19:29] -rw------- 1 boincer umatlas  12359680 Nov 24 14:19 result.tar.gz
14:19:31 (16601): run_atlas exited; CPU time 554678.576852
14:19:31 (16601): called boinc_finish(0)

</stderr_txt>
]]>

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