Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:40:18 (3619172): wrapper (7.7.26015): starting
12:40:18 (3619172): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 12:40:18] Arguments: --nthreads 8
[2025-11-23 12:40:18] Threads: 8
[2025-11-23 12:40:18] Checking for CVMFS
[2025-11-23 12:40:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 12:40:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 12:40:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 12:40:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 12:40:19] 2.13.2.0 6926 27320 248800 153216 1 603 29372640 40960000 25079 16776704 0 140788993 99.677 112324040 38604 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 12:40:19] CVMFS is ok
[2025-11-23 12:40:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 12:40:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 12:40:19] Further information can be found at the LHC@home message board.
[2025-11-23 12:40:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 12:40:19] Checking for apptainer binary...
[2025-11-23 12:40:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 12:40:19] Running /usr/bin/apptainer --version
[2025-11-23 12:40:19] apptainer version 1.4.4-1.el9
[2025-11-23 12:40:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 12:40:41] c-212-11.aglt2.org
[2025-11-23 12:40:41] apptainer works
[2025-11-23 12:40:41] Set ATHENA_PROC_NUMBER=8
[2025-11-23 12:40:41] Set ATHENA_CORE_NUMBER=8
[2025-11-23 12:40:41] Starting ATLAS job with PandaID=6895336160
[2025-11-23 12:40:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 12:40:12]  *** The last 200 lines of the pilot log: ***
[2025-11-24 12:40:12] 2025-11-24 17:39:19,318 | INFO     | time since job start (86292s) is within the limit (172800.0s)
[2025-11-24 12:40:12] 2025-11-24 17:39:20,032 | INFO     | monitor loop #5549: job 0:6895336160 is in state 'finished'
[2025-11-24 12:40:12] 2025-11-24 17:39:20,032 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:40:12] 2025-11-24 17:39:21,326 | INFO     | time since job start (86294s) is within the limit (172800.0s)
[2025-11-24 12:40:12] 2025-11-24 17:39:22,559 | INFO     | monitor loop #5550: job 0:6895336160 is in state 'finished'
[2025-11-24 12:40:12] 2025-11-24 17:39:22,559 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:40:12] 2025-11-24 17:39:23,341 | INFO     | time since job start (86296s) is within the limit (172800.0s)
[2025-11-24 12:40:12] 2025-11-24 17:39:25,099 | INFO     | monitor loop #5551: job 0:6895336160 is in state 'finished'
[2025-11-24 12:40:12] 2025-11-24 17:39:25,099 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:40:12] 2025-11-24 17:39:25,348 | INFO     | time since job start (86298s) is within the limit (172800.0s)
[2025-11-24 12:40:12] 2025-11-24 17:39:27,604 | INFO     | monitor loop #5552: job 0:6895336160 is in state 'finished'
[2025-11-24 12:40:12] 2025-11-24 17:39:27,604 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:40:12] 2025-11-24 17:39:29,898 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 12:40:12] 2025-11-24 17:39:29,971 | INFO     | PID=3623518 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 12:40:12] 2025-11-24 17:39:29,971 | INFO     | .. there are 27 such processes running
[2025-11-24 12:40:12] 2025-11-24 17:39:29,982 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2986.517333333333
[2025-11-24 12:40:12] 2025-11-24 17:39:30,051 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895336160/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 12:40:12] 2025-11-24 17:39:30,051 | INFO     | extracted standard info from prmon json
[2025-11-24 12:40:12] 2025-11-24 17:39:30,051 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 12:40:12] 2025-11-24 17:39:30,052 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 12:40:12] 2025-11-24 17:39:30,207 | INFO     | monitor loop #5553: job 0:6895336160 is in state 'finished'
[2025-11-24 12:40:12] 2025-11-24 17:39:30,207 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:40:12] 2025-11-24 17:39:30,226 | INFO     | fitting pss+swap vs Time
[2025-11-24 12:40:12] 2025-11-24 17:39:30,227 | INFO     | sum of square deviations: 874750847993.6313
[2025-11-24 12:40:12] 2025-11-24 17:39:30,268 | INFO     | sum of deviations: 3851701008816.3604
[2025-11-24 12:40:12] 2025-11-24 17:39:30,268 | INFO     | mean x: 1763962794.4493985
[2025-11-24 12:40:12] 2025-11-24 17:39:30,268 | INFO     | mean y: 2863527.501769285
[2025-11-24 12:40:12] 2025-11-24 17:39:30,268 | INFO     | intersect: -7764213567.054807
[2025-11-24 12:40:12] 2025-11-24 17:39:30,270 | INFO     | chi2: 20.32293721963064
[2025-11-24 12:40:12] 2025-11-24 17:39:30,271 | INFO     | sum of square deviations: 865498185878.5272
[2025-11-24 12:40:12] 2025-11-24 17:39:30,398 | INFO     | sum of deviations: 4350269351511.489
[2025-11-24 12:40:12] 2025-11-24 17:39:30,398 | INFO     | mean x: 1763962641.9580965
[2025-11-24 12:40:12] 2025-11-24 17:39:30,398 | INFO     | mean y: 2871742.6015625
[2025-11-24 12:40:12] 2025-11-24 17:39:30,399 | INFO     | intersect: -8863365926.90009
[2025-11-24 12:40:12] 2025-11-24 17:39:30,423 | INFO     | chi2: 16.630072839337608
[2025-11-24 12:40:12] 2025-11-24 17:39:30,423 | INFO     | current chi2=16.630072839337608 (change=18.170918604845976 %)
[2025-11-24 12:40:12] 2025-11-24 17:39:30,424 | INFO     | right removable region: 1407
[2025-11-24 12:40:12] 2025-11-24 17:39:30,425 | INFO     | sum of square deviations: 865496074668.5283
[2025-11-24 12:40:12] 2025-11-24 17:39:30,624 | INFO     | sum of deviations: 3343284154873.5376
[2025-11-24 12:40:12] 2025-11-24 17:39:30,624 | INFO     | mean x: 1763962946.9580965
[2025-11-24 12:40:12] 2025-11-24 17:39:30,624 | INFO     | mean y: 2871903.6363636362
[2025-11-24 12:40:12] 2025-11-24 17:39:30,624 | INFO     | intersect: -6811057752.379302
[2025-11-24 12:40:12] 2025-11-24 17:39:30,669 | INFO     | chi2: 17.061844144051964
[2025-11-24 12:40:12] 2025-11-24 17:39:30,669 | INFO     | current chi2=17.061844144051964 (change=16.04636692194606 %)
[2025-11-24 12:40:12] 2025-11-24 17:39:30,669 | INFO     | left removable region: 10
[2025-11-24 12:40:12] 2025-11-24 17:39:30,671 | INFO     | sum of square deviations: 845368388030.4941
[2025-11-24 12:40:12] 2025-11-24 17:39:30,960 | INFO     | sum of deviations: 3629307827728.2466
[2025-11-24 12:40:12] 2025-11-24 17:39:30,961 | INFO     | mean x: 1763962916.4767358
[2025-11-24 12:40:12] 2025-11-24 17:39:30,961 | INFO     | mean y: 2886741.31496063
[2025-11-24 12:40:12] 2025-11-24 17:39:30,961 | INFO     | intersect: -7570100977.69167
[2025-11-24 12:40:12] 2025-11-24 17:39:30,962 | INFO     | chi2: 11.294779000378623
[2025-11-24 12:40:12] 2025-11-24 17:39:30,962 | INFO     | current memory leak: 4.29 B/s (using 1397 data points, chi2=11.29)
[2025-11-24 12:40:12] 2025-11-24 17:39:31,017 | INFO     | time since job start (86304s) is within the limit (172800.0s)
[2025-11-24 12:40:12] 2025-11-24 17:39:31,018 | INFO     | could have reported an average CPU frequency of 3030 MHz (51 samples)
[2025-11-24 12:40:12] 2025-11-24 17:39:31,018 | INFO     | ..............................
[2025-11-24 12:40:12] 2025-11-24 17:39:31,019 | INFO     | . Timing measurements:
[2025-11-24 12:40:12] 2025-11-24 17:39:31,019 | INFO     | . get job = 0 s
[2025-11-24 12:40:12] 2025-11-24 17:39:31,019 | INFO     | . initial setup = 3 s
[2025-11-24 12:40:12] 2025-11-24 17:39:31,019 | INFO     | . payload setup = 16 s
[2025-11-24 12:40:12] 2025-11-24 17:39:31,019 | INFO     | . stage-in = 0 s
[2025-11-24 12:40:12] 2025-11-24 17:39:31,019 | INFO     | . payload execution = 86198 s
[2025-11-24 12:40:12] 2025-11-24 17:39:31,019 | INFO     | . stage-out = 17 s
[2025-11-24 12:40:12] 2025-11-24 17:39:31,019 | INFO     | . log creation = 3 s
[2025-11-24 12:40:12] 2025-11-24 17:39:31,019 | INFO     | ..............................
[2025-11-24 12:40:12] 2025-11-24 17:39:31,739 | INFO     | 
[2025-11-24 12:40:12] 2025-11-24 17:39:31,739 | INFO     | job summary report
[2025-11-24 12:40:12] 2025-11-24 17:39:31,739 | INFO     | --------------------------------------------------
[2025-11-24 12:40:12] 2025-11-24 17:39:31,739 | INFO     | PanDA job id: 6895336160
[2025-11-24 12:40:12] 2025-11-24 17:39:31,739 | INFO     | task id: 47556137
[2025-11-24 12:40:12] 2025-11-24 17:39:31,740 | INFO     | errors: (none)
[2025-11-24 12:40:12] 2025-11-24 17:39:31,740 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 12:40:12] 2025-11-24 17:39:31,740 | INFO     | pilot state: finished 
[2025-11-24 12:40:12] 2025-11-24 17:39:31,740 | INFO     | transexitcode: 0
[2025-11-24 12:40:12] 2025-11-24 17:39:31,740 | INFO     | exeerrorcode: 0
[2025-11-24 12:40:12] 2025-11-24 17:39:31,740 | INFO     | exeerrordiag: 
[2025-11-24 12:40:12] 2025-11-24 17:39:31,740 | INFO     | exitcode: 0
[2025-11-24 12:40:12] 2025-11-24 17:39:31,740 | INFO     | exitmsg: OK
[2025-11-24 12:40:12] 2025-11-24 17:39:31,740 | INFO     | cpuconsumptiontime: 220544 s
[2025-11-24 12:40:12] 2025-11-24 17:39:31,740 | INFO     | nevents: 1000
[2025-11-24 12:40:12] 2025-11-24 17:39:31,740 | INFO     | neventsw: 0
[2025-11-24 12:40:12] 2025-11-24 17:39:31,740 | INFO     | pid: 3632307
[2025-11-24 12:40:12] 2025-11-24 17:39:31,740 | INFO     | pgrp: 3632307
[2025-11-24 12:40:12] 2025-11-24 17:39:31,741 | INFO     | corecount: 8
[2025-11-24 12:40:12] 2025-11-24 17:39:31,741 | INFO     | event service: False
[2025-11-24 12:40:12] 2025-11-24 17:39:31,741 | INFO     | sizes: {0: 2298806, 11: 2298806, 12: 2299096, 22: 2299124, 86217: 2364145, 86218: 2364144, 86236: 2374113, 86238: 2374169, 86274: 2374415}
[2025-11-24 12:40:12] 2025-11-24 17:39:31,741 | INFO     | --------------------------------------------------
[2025-11-24 12:40:12] 2025-11-24 17:39:31,741 | INFO     | 
[2025-11-24 12:40:12] 2025-11-24 17:39:31,741 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 12:40:12] 2025-11-24 17:39:31,966 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 12:40:12] 2025-11-24 17:39:31,967 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 12:40:12] 2025-11-24 17:39:31,967 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 12:40:12] 2025-11-24 17:39:31,967 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 12:40:12] 2025-11-24 17:39:31,967 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 12:40:12] 2025-11-24 17:39:31,967 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 12:40:12] 2025-11-24 17:39:31,967 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 12:40:12] 2025-11-24 17:39:31,967 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 12:40:12] 2025-11-24 17:39:31,967 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 12:40:12] 2025-11-24 17:39:31,967 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 12:40:12] 2025-11-24 17:39:31,968 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 12:40:12] 2025-11-24 17:39:31,968 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 12:40:12] 2025-11-24 17:39:31,968 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 12:40:12] 2025-11-24 17:39:31,968 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 12:40:12] 2025-11-24 17:39:31,968 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 12:40:12] 2025-11-24 17:39:31,968 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 12:40:12] 2025-11-24 17:39:31,968 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 12:40:12] 2025-11-24 17:39:31,968 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 12:40:12] 2025-11-24 17:39:31,968 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 12:40:12] 2025-11-24 17:39:31,968 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 12:40:12] 2025-11-24 17:39:31,968 | INFO     | job 6895336160 has completed (purged errors)
[2025-11-24 12:40:12] 2025-11-24 17:39:31,969 | INFO     | overall cleanup function is called
[2025-11-24 12:40:12] 2025-11-24 17:39:33,051 | INFO     | --- collectZombieJob: --- 10, [3632307]
[2025-11-24 12:40:12] 2025-11-24 17:39:33,051 | INFO     | zombie collector waiting for pid 3632307
[2025-11-24 12:40:12] 2025-11-24 17:39:33,051 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 12:40:12] 2025-11-24 17:39:33,051 | INFO     | collected zombie processes
[2025-11-24 12:40:12] 2025-11-24 17:39:33,051 | INFO     | will attempt to kill all subprocesses of pid=3632307
[2025-11-24 12:40:12] 2025-11-24 17:39:34,717 | INFO     | process IDs to be killed: [3632307] (in reverse order)
[2025-11-24 12:40:12] 2025-11-24 17:39:35,417 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 12:40:12] 2025-11-24 17:39:35,417 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 12:40:12] 2025-11-24 17:39:35,436 | INFO     | did not find any defunct processes belonging to 3632307
[2025-11-24 12:40:12] 2025-11-24 17:39:35,498 | INFO     | did not find any defunct processes belonging to 3632307
[2025-11-24 12:40:12] 2025-11-24 17:39:35,513 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 12:40:12] 2025-11-24 17:39:35,514 | INFO     | ready for new job
[2025-11-24 12:40:12] 2025-11-24 17:39:35,514 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 12:40:12] 2025-11-24 17:39:35,525 | INFO     | ***************************************
[2025-11-24 12:40:12] 2025-11-24 17:39:35,525 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 12:40:12] 2025-11-24 17:39:35,525 | INFO     | ***************************************
[2025-11-24 12:40:12] 2025-11-24 17:39:35,526 | INFO     | 
[2025-11-24 12:40:12] 2025-11-24 17:39:35,535 | INFO     | architecture information:
[2025-11-24 12:40:12] 2025-11-24 17:39:35,603 | INFO     | executing command: cat /etc/os-release
[2025-11-24 12:40:12] 2025-11-24 17:39:35,809 | INFO     | cat /etc/os-release:
[2025-11-24 12:40:12] NAME="CentOS Linux"
[2025-11-24 12:40:12] VERSION="7 (Core)"
[2025-11-24 12:40:12] ID="centos"
[2025-11-24 12:40:12] ID_LIKE="rhel fedora"
[2025-11-24 12:40:12] VERSION_ID="7"
[2025-11-24 12:40:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 12:40:12] ANSI_COLOR="0;31"
[2025-11-24 12:40:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 12:40:12] HOME_URL="https://www.centos.org/"
[2025-11-24 12:40:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 12:40:12] 
[2025-11-24 12:40:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 12:40:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 12:40:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 12:40:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 12:40:12] 
[2025-11-24 12:40:12] 2025-11-24 17:39:35,809 | INFO     | ***************************************
[2025-11-24 12:40:12] 2025-11-24 17:39:36,313 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 12:40:12] 2025-11-24 17:39:36,423 | INFO     | sufficient remaining disk space (119220994048 B)
[2025-11-24 12:40:12] 2025-11-24 17:39:36,424 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 12:40:12] 2025-11-24 17:39:36,424 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 12:40:12] 2025-11-24 17:39:36,424 | INFO     | update_server=False
[2025-11-24 12:40:12] 2025-11-24 17:39:36,424 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 12:40:12] 2025-11-24 17:39:36,425 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 12:40:12] 2025-11-24 17:39:36,425 | INFO     | aborting loop
[2025-11-24 12:40:12] 2025-11-24 17:39:36,692 | INFO     | [monitor] cgroup control has ended
[2025-11-24 12:40:12] 2025-11-24 17:39:36,764 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 12:40:12] 2025-11-24 17:39:36,812 | INFO     | all data control threads have been joined
[2025-11-24 12:40:12] 2025-11-24 17:39:36,966 | INFO     | all job control threads have been joined
[2025-11-24 12:40:12] 2025-11-24 17:39:37,430 | INFO     | [job] retrieve thread has finished
[2025-11-24 12:40:12] 2025-11-24 17:39:37,431 | INFO     | [job] job monitor thread has finished
[2025-11-24 12:40:12] 2025-11-24 17:39:37,504 | INFO     | all payload control threads have been joined
[2025-11-24 12:40:12] 2025-11-24 17:39:37,549 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 12:40:12] 2025-11-24 17:39:37,770 | INFO     | [job] queue monitor thread has finished
[2025-11-24 12:40:12] 2025-11-24 17:39:37,786 | INFO     | [payload] validate_post thread has finished
[2025-11-24 12:40:12] 2025-11-24 17:39:37,818 | INFO     | [data] control thread has finished
[2025-11-24 12:40:12] 2025-11-24 17:39:37,972 | INFO     | [job] control thread has finished
[2025-11-24 12:40:12] 2025-11-24 17:39:38,104 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 12:40:12] 2025-11-24 17:39:38,167 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 12:40:12] 2025-11-24 17:39:38,167 | INFO     | [data] copytool_in thread has finished
[2025-11-24 12:40:12] 2025-11-24 17:39:38,168 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 12:40:12] 2025-11-24 17:39:38,168 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 12:40:12] 2025-11-24 17:39:38,222 | INFO     | [job] validate thread has finished
[2025-11-24 12:40:12] 2025-11-24 17:39:38,296 | INFO     | [payload] failed_post thread has finished
[2025-11-24 12:40:12] 2025-11-24 17:39:38,510 | INFO     | [payload] control thread has finished
[2025-11-24 12:40:12] 2025-11-24 17:39:38,649 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 12:40:12] 2025-11-24 17:39:39,556 | INFO     | [data] copytool_out thread has finished
[2025-11-24 12:40:12] 2025-11-24 17:39:42,658 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 12:40:12] 2025-11-24 17:39:43,845 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140695961540416)>', '<ExcThread(monitor, started 140695461418752)>']
[2025-11-24 12:40:12] 2025-11-24 17:39:48,879 | INFO     | all workflow threads have been joined
[2025-11-24 12:40:12] 2025-11-24 17:39:48,879 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 12:40:12] 2025-11-24 17:39:48,879 | INFO     | traces error code: 0
[2025-11-24 12:40:12] 2025-11-24 17:39:48,879 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 12:40:12] 2025-11-24 17:40:09,324 | INFO     | PID=3623518 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 12:40:12] 2025-11-24 17:40:09,324 | INFO     | .. there are 27 such processes running
[2025-11-24 12:40:12] 2025-11-24 17:40:09,324 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 12:40:12] 2025-11-24 17:40:09,325 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 12:40:12] 2025-11-24 17:40:09,325 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 12:40:12] 2025-11-24 17:40:09,338 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 12:40:12] 2025-11-24 17:40:09,338 | INFO     | [monitor] control thread has ended
[2025-11-24 12:40:12] 2025-11-24 17:40:10,166 [wrapper] ==== pilot stdout END ====
[2025-11-24 12:40:12] 2025-11-24 17:40:10,199 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 12:40:12] 2025-11-24 17:40:10,244 [wrapper] pilotpid: 3623518
[2025-11-24 12:40:12] 2025-11-24 17:40:10,284 [wrapper] Pilot exit status: 0
[2025-11-24 12:40:12] 2025-11-24 17:40:10,565 [wrapper] pandaids: 6895336160
[2025-11-24 12:40:12] 2025-11-24 17:40:10,874 [wrapper] cleanup supervisor_pilot 3154652 3623519
[2025-11-24 12:40:12] 2025-11-24 17:40:10,900 [wrapper] Test setup, not cleaning
[2025-11-24 12:40:12] 2025-11-24 17:40:10,919 [wrapper] apfmon messages muted
[2025-11-24 12:40:12] 2025-11-24 17:40:10,959 [wrapper] ==== wrapper stdout END ====
[2025-11-24 12:40:12] 2025-11-24 17:40:10,983 [wrapper] ==== wrapper stderr END ====
[2025-11-24 12:40:12]  *** Error codes and diagnostics ***
[2025-11-24 12:40:12]     "exeErrorCode": 0,
[2025-11-24 12:40:12]     "exeErrorDiag": "",
[2025-11-24 12:40:12]     "pilotErrorCode": 0,
[2025-11-24 12:40:12]     "pilotErrorDiag": "",
[2025-11-24 12:40:12]  *** Listing of results directory ***
[2025-11-24 12:40:12] total 1332852
[2025-11-24 12:40:12] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 00:12 pilot3.tar.gz
[2025-11-24 12:40:12] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 00:12 queuedata.json
[2025-11-24 12:40:12] -rwx------. 1 boincer umatlas     36292 Nov 22 00:14 runpilot2-wrapper.sh
[2025-11-24 12:40:12] -rw-r--r--. 1 boincer umatlas       100 Nov 23 12:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 12:40:12] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 12:40 run_atlas
[2025-11-24 12:40:12] -rw-r--r--. 1 boincer umatlas       105 Nov 23 12:40 job.xml
[2025-11-24 12:40:12] -rw-r--r--. 2 boincer umatlas 410365095 Nov 23 12:40 EVNT.47483658._000273.pool.root.1
[2025-11-24 12:40:12] -rw-r--r--. 2 boincer umatlas    590104 Nov 23 12:40 input.tar.gz
[2025-11-24 12:40:12] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 12:40 start_atlas.sh
[2025-11-24 12:40:12] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 12:40 shared
[2025-11-24 12:40:12] -rw-r--r--. 1 boincer umatlas         0 Nov 23 12:40 boinc_lockfile
[2025-11-24 12:40:12] -rw-r--r--. 1 boincer umatlas      2785 Nov 23 12:40 pandaJob.out
[2025-11-24 12:40:12] -rw-------. 1 boincer umatlas        57 Nov 23 12:40 setup.sh.local
[2025-11-24 12:40:12] -rw-------. 1 boincer umatlas    989786 Nov 23 12:41 agis_schedconf.cvmfs.json
[2025-11-24 12:40:12] drwx------. 5 boincer umatlas      4096 Nov 23 12:41 pilot3
[2025-11-24 12:40:12] -rw-r--r--. 1 boincer umatlas       533 Nov 24 12:06 boinc_task_state.xml
[2025-11-24 12:40:12] -rw-------. 1 boincer umatlas 923006828 Nov 24 12:36 HITS.47556137._002694.pool.root.1
[2025-11-24 12:40:12] -rw-------. 1 boincer umatlas      1082 Nov 24 12:38 memory_monitor_summary.json
[2025-11-24 12:40:12] -rw-------. 1 boincer umatlas   1516227 Nov 24 12:38 agis_ddmendpoints.agis.ALL.json
[2025-11-24 12:40:12] -rw-------. 1 boincer umatlas   2471735 Nov 24 12:38 log.47556137._002694.job.log.tgz.1
[2025-11-24 12:40:12] -rw-r--r--. 1 boincer umatlas      6949 Nov 24 12:38 init_data.xml
[2025-11-24 12:40:12] -rw-------. 1 boincer umatlas        95 Nov 24 12:39 pilot_heartbeat.json
[2025-11-24 12:40:12] -rw-------. 1 boincer umatlas      8630 Nov 24 12:39 heartbeat.json
[2025-11-24 12:40:12] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 12:40 boinc_mmap_file
[2025-11-24 12:40:12] -rw-r--r--. 1 boincer umatlas        29 Nov 24 12:40 wrapper_checkpoint.txt
[2025-11-24 12:40:12] -rw-------. 1 boincer umatlas       823 Nov 24 12:40 pilotlog.txt
[2025-11-24 12:40:12] -rw-------. 1 boincer umatlas  11306393 Nov 24 12:40 log.47556137._002694.job.log.1
[2025-11-24 12:40:12] -rw-------. 1 boincer umatlas       353 Nov 24 12:40 output.list
[2025-11-24 12:40:12] -rw-r--r--. 1 boincer umatlas       620 Nov 24 12:40 runtime_log
[2025-11-24 12:40:12] -rw-------. 1 boincer umatlas  13793280 Nov 24 12:40 result.tar.gz
[2025-11-24 12:40:12] -rw-r--r--. 1 boincer umatlas      9343 Nov 24 12:40 runtime_log.err
[2025-11-24 12:40:12] -rw-------. 1 boincer umatlas       666 Nov 24 12:40 AZ7KDmF8ug8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm3xHKDmbbE7tm.diag
[2025-11-24 12:40:12] -rw-r--r--. 1 boincer umatlas     21564 Nov 24 12:40 stderr.txt
[2025-11-24 12:40:12] HITS file was successfully produced:
[2025-11-24 12:40:12] -rw-------. 1 boincer umatlas 923006828 Nov 24 12:36 shared/HITS.pool.root.1
[2025-11-24 12:40:12]  *** Contents of shared directory: ***
[2025-11-24 12:40:12] total 1316200
[2025-11-24 12:40:12] -rw-r--r--. 2 boincer umatlas 410365095 Nov 23 12:40 ATLAS.root_0
[2025-11-24 12:40:12] -rw-r--r--. 2 boincer umatlas    590104 Nov 23 12:40 input.tar.gz
[2025-11-24 12:40:12] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 12:40 start_atlas.sh
[2025-11-24 12:40:12] -rw-------. 1 boincer umatlas 923006828 Nov 24 12:36 HITS.pool.root.1
[2025-11-24 12:40:12] -rw-------. 1 boincer umatlas  13793280 Nov 24 12:40 result.tar.gz
12:40:13 (3619172): run_atlas exited; CPU time 221589.181738
12:40:13 (3619172): called boinc_finish(0)

</stderr_txt>
]]>

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