Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:04:41 (3194): wrapper (7.7.26015): starting
03:04:41 (3194): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 03:04:41] Arguments: --nthreads 8
[2025-11-26 03:04:41] Threads: 8
[2025-11-26 03:04:41] Checking for CVMFS
[2025-11-26 03:04:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 03:04:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 03:04:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 03:04:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 03:04:43] 2.11.2.0 22643 145652 138964 153304 0 85 23651997 25165825 2124 130560 9 44835536 99.865 27481249 1902 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 03:04:43] CVMFS is ok
[2025-11-26 03:04:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 03:04:43] Checking for apptainer binary...
[2025-11-26 03:04:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 03:04:43] Running /usr/bin/apptainer --version
[2025-11-26 03:04:43] apptainer version 1.3.2-1.el7
[2025-11-26 03:04:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 03:05:01] cg-vwn227.simple-grid.lan
[2025-11-26 03:05:01] apptainer works
[2025-11-26 03:05:01] Set ATHENA_PROC_NUMBER=8
[2025-11-26 03:05:01] Set ATHENA_CORE_NUMBER=8
[2025-11-26 03:05:02] Starting ATLAS job with PandaID=6893876788
[2025-11-26 03:05:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 03:09:06]  *** The last 200 lines of the pilot log: ***
[2025-11-27 03:09:06] 2025-11-27 02:07:42,823 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:09:06] 2025-11-27 02:07:44,330 | INFO     | time since job start (86360s) is within the limit (172800.0s)
[2025-11-27 03:09:06] 2025-11-27 02:07:45,327 | INFO     | monitor loop #5819: job 0:6893876788 is in state 'finished'
[2025-11-27 03:09:06] 2025-11-27 02:07:45,328 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:09:06] 2025-11-27 02:07:46,341 | INFO     | time since job start (86362s) is within the limit (172800.0s)
[2025-11-27 03:09:06] 2025-11-27 02:07:47,832 | INFO     | monitor loop #5820: job 0:6893876788 is in state 'finished'
[2025-11-27 03:09:06] 2025-11-27 02:07:47,833 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:09:06] 2025-11-27 02:07:48,350 | INFO     | time since job start (86364s) is within the limit (172800.0s)
[2025-11-27 03:09:06] 2025-11-27 02:07:50,350 | INFO     | monitor loop #5821: job 0:6893876788 is in state 'finished'
[2025-11-27 03:09:06] 2025-11-27 02:07:50,351 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:09:06] 2025-11-27 02:07:50,356 | INFO     | time since job start (86366s) is within the limit (172800.0s)
[2025-11-27 03:09:06] 2025-11-27 02:07:52,373 | INFO     | time since job start (86368s) is within the limit (172800.0s)
[2025-11-27 03:09:06] 2025-11-27 02:07:52,373 | INFO     | 86373s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-27 03:09:06] 2025-11-27 02:07:52,855 | INFO     | monitor loop #5822: job 0:6893876788 is in state 'finished'
[2025-11-27 03:09:06] 2025-11-27 02:07:52,856 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:09:06] 2025-11-27 02:07:54,382 | INFO     | time since job start (86370s) is within the limit (172800.0s)
[2025-11-27 03:09:06] 2025-11-27 02:07:54,700 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 03:09:06] 2025-11-27 02:07:54,701 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 03:09:06] 2025-11-27 02:07:54,703 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6893876788/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 03:09:06] 2025-11-27 02:07:54,703 | INFO     | extracted standard info from prmon json
[2025-11-27 03:09:06] 2025-11-27 02:07:54,704 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 03:09:06] 2025-11-27 02:07:54,704 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 03:09:06] 2025-11-27 02:07:54,737 | INFO     | fitting pss+swap vs Time
[2025-11-27 03:09:06] 2025-11-27 02:07:54,739 | INFO     | sum of square deviations: 861854682865.6584
[2025-11-27 03:09:06] 2025-11-27 02:07:54,807 | INFO     | sum of deviations: 3585764315003.1943
[2025-11-27 03:09:06] 2025-11-27 02:07:54,807 | INFO     | mean x: 1764166284.5746799
[2025-11-27 03:09:06] 2025-11-27 02:07:54,808 | INFO     | mean y: 2844232.0839260314
[2025-11-27 03:09:06] 2025-11-27 02:07:54,808 | INFO     | intersect: -7337006249.352403
[2025-11-27 03:09:06] 2025-11-27 02:07:54,809 | INFO     | chi2: 19.81534577035414
[2025-11-27 03:09:06] 2025-11-27 02:07:54,811 | INFO     | sum of square deviations: 852693046347.3635
[2025-11-27 03:09:06] 2025-11-27 02:07:54,881 | INFO     | sum of deviations: 4047858161071.3667
[2025-11-27 03:09:06] 2025-11-27 02:07:54,881 | INFO     | mean x: 1764166132.0785153
[2025-11-27 03:09:06] 2025-11-27 02:07:54,881 | INFO     | mean y: 2851922.7694503926
[2025-11-27 03:09:06] 2025-11-27 02:07:54,882 | INFO     | intersect: -8371901812.832893
[2025-11-27 03:09:06] 2025-11-27 02:07:54,883 | INFO     | chi2: 16.693482469825998
[2025-11-27 03:09:06] 2025-11-27 02:07:54,883 | INFO     | current chi2=16.693482469825998 (change=15.754775802089608 %)
[2025-11-27 03:09:06] 2025-11-27 02:07:54,884 | INFO     | right removable region: 1400
[2025-11-27 03:09:06] 2025-11-27 02:07:54,886 | INFO     | sum of square deviations: 852692124637.3633
[2025-11-27 03:09:06] 2025-11-27 02:07:54,946 | INFO     | sum of deviations: 3006490495357.619
[2025-11-27 03:09:06] 2025-11-27 02:07:54,946 | INFO     | mean x: 1764166437.0785153
[2025-11-27 03:09:06] 2025-11-27 02:07:54,946 | INFO     | mean y: 2853872.721627409
[2025-11-27 03:09:06] 2025-11-27 02:07:54,947 | INFO     | intersect: -6217386085.00187
[2025-11-27 03:09:06] 2025-11-27 02:07:54,948 | INFO     | chi2: 15.263889047095777
[2025-11-27 03:09:06] 2025-11-27 02:07:54,948 | INFO     | current chi2=15.263889047095777 (change=22.96935302571315 %)
[2025-11-27 03:09:06] 2025-11-27 02:07:54,949 | INFO     | left removable region: 10
[2025-11-27 03:09:06] 2025-11-27 02:07:54,951 | INFO     | sum of square deviations: 832764652462.967
[2025-11-27 03:09:06] 2025-11-27 02:07:55,024 | INFO     | sum of deviations: 3113135664365.1577
[2025-11-27 03:09:06] 2025-11-27 02:07:55,024 | INFO     | mean x: 1764166406.5870504
[2025-11-27 03:09:06] 2025-11-27 02:07:55,024 | INFO     | mean y: 2871237.3086330937
[2025-11-27 03:09:06] 2025-11-27 02:07:55,024 | INFO     | intersect: -6592136538.270918
[2025-11-27 03:09:06] 2025-11-27 02:07:55,026 | INFO     | chi2: 8.507765531855142
[2025-11-27 03:09:06] 2025-11-27 02:07:55,026 | INFO     | current memory leak: 3.74 B/s (using 1390 data points, chi2=8.51)
[2025-11-27 03:09:06] 2025-11-27 02:07:55,028 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-27 03:09:06] 2025-11-27 02:07:55,028 | INFO     | ..............................
[2025-11-27 03:09:06] 2025-11-27 02:07:55,028 | INFO     | . Timing measurements:
[2025-11-27 03:09:06] 2025-11-27 02:07:55,028 | INFO     | . get job = 0 s
[2025-11-27 03:09:06] 2025-11-27 02:07:55,028 | INFO     | . initial setup = 5 s
[2025-11-27 03:09:06] 2025-11-27 02:07:55,029 | INFO     | . payload setup = 155 s
[2025-11-27 03:09:06] 2025-11-27 02:07:55,029 | INFO     | . stage-in = 0 s
[2025-11-27 03:09:06] 2025-11-27 02:07:55,029 | INFO     | . payload execution = 85898 s
[2025-11-27 03:09:06] 2025-11-27 02:07:55,029 | INFO     | . stage-out = 5 s
[2025-11-27 03:09:06] 2025-11-27 02:07:55,029 | INFO     | . log creation = 1 s
[2025-11-27 03:09:06] 2025-11-27 02:07:55,029 | INFO     | ..............................
[2025-11-27 03:09:06] 2025-11-27 02:07:55,173 | INFO     | 
[2025-11-27 03:09:06] 2025-11-27 02:07:55,174 | INFO     | job summary report
[2025-11-27 03:09:06] 2025-11-27 02:07:55,174 | INFO     | --------------------------------------------------
[2025-11-27 03:09:06] 2025-11-27 02:07:55,174 | INFO     | PanDA job id: 6893876788
[2025-11-27 03:09:06] 2025-11-27 02:07:55,174 | INFO     | task id: 47523449
[2025-11-27 03:09:06] 2025-11-27 02:07:55,174 | INFO     | errors: (none)
[2025-11-27 03:09:06] 2025-11-27 02:07:55,174 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 03:09:06] 2025-11-27 02:07:55,174 | INFO     | pilot state: finished 
[2025-11-27 03:09:06] 2025-11-27 02:07:55,174 | INFO     | transexitcode: 0
[2025-11-27 03:09:06] 2025-11-27 02:07:55,174 | INFO     | exeerrorcode: 0
[2025-11-27 03:09:06] 2025-11-27 02:07:55,174 | INFO     | exeerrordiag: 
[2025-11-27 03:09:06] 2025-11-27 02:07:55,174 | INFO     | exitcode: 0
[2025-11-27 03:09:06] 2025-11-27 02:07:55,175 | INFO     | exitmsg: OK
[2025-11-27 03:09:06] 2025-11-27 02:07:55,175 | INFO     | cpuconsumptiontime: 324159 s
[2025-11-27 03:09:06] 2025-11-27 02:07:55,175 | INFO     | nevents: 1000
[2025-11-27 03:09:06] 2025-11-27 02:07:55,175 | INFO     | neventsw: 0
[2025-11-27 03:09:06] 2025-11-27 02:07:55,175 | INFO     | pid: 13609
[2025-11-27 03:09:06] 2025-11-27 02:07:55,175 | INFO     | pgrp: 13609
[2025-11-27 03:09:06] 2025-11-27 02:07:55,175 | INFO     | corecount: 8
[2025-11-27 03:09:06] 2025-11-27 02:07:55,175 | INFO     | event service: False
[2025-11-27 03:09:06] 2025-11-27 02:07:55,175 | INFO     | sizes: {0: 2283435, 1: 2284036, 2: 2284319, 3: 2284319, 13: 2284347, 24: 2284403, 35: 2284559, 45: 2284587, 56: 2284615, 67: 2284643, 78: 2284671, 88: 2285007, 99:
[2025-11-27 03:09:06] 2025-11-27 02:07:55,175 | INFO     | --------------------------------------------------
[2025-11-27 03:09:06] 2025-11-27 02:07:55,175 | INFO     | 
[2025-11-27 03:09:06] 2025-11-27 02:07:55,175 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-27 03:09:06] 2025-11-27 02:07:55,448 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 03:09:06] 2025-11-27 02:07:55,449 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 03:09:06] 2025-11-27 02:07:55,449 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 03:09:06] 2025-11-27 02:07:55,449 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 03:09:06] 2025-11-27 02:07:55,449 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 03:09:06] 2025-11-27 02:07:55,449 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 03:09:06] 2025-11-27 02:07:55,449 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 03:09:06] 2025-11-27 02:07:55,449 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 03:09:06] 2025-11-27 02:07:55,449 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 03:09:06] 2025-11-27 02:07:55,449 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 03:09:06] 2025-11-27 02:07:55,449 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 03:09:06] 2025-11-27 02:07:55,449 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 03:09:06] 2025-11-27 02:07:55,450 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 03:09:06] 2025-11-27 02:07:55,450 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 03:09:06] 2025-11-27 02:07:55,450 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 03:09:06] 2025-11-27 02:07:55,450 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 03:09:06] 2025-11-27 02:07:55,450 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 03:09:06] 2025-11-27 02:07:55,450 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 03:09:06] 2025-11-27 02:07:55,450 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 03:09:06] 2025-11-27 02:07:55,450 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 03:09:06] 2025-11-27 02:07:55,450 | INFO     | job 6893876788 has completed (purged errors)
[2025-11-27 03:09:06] 2025-11-27 02:07:55,450 | INFO     | overall cleanup function is called
[2025-11-27 03:09:06] 2025-11-27 02:07:56,467 | INFO     | --- collectZombieJob: --- 10, [13609]
[2025-11-27 03:09:06] 2025-11-27 02:07:56,468 | INFO     | zombie collector waiting for pid 13609
[2025-11-27 03:09:06] 2025-11-27 02:07:56,468 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 03:09:06] 2025-11-27 02:07:56,468 | INFO     | collected zombie processes
[2025-11-27 03:09:06] 2025-11-27 02:07:56,468 | INFO     | will attempt to kill all subprocesses of pid=13609
[2025-11-27 03:09:06] 2025-11-27 02:07:56,633 | INFO     | process IDs to be killed: [13609] (in reverse order)
[2025-11-27 03:09:06] 2025-11-27 02:07:57,532 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 03:09:06] 2025-11-27 02:07:57,532 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 03:09:06] 2025-11-27 02:07:57,536 | INFO     | did not find any defunct processes belonging to 13609
[2025-11-27 03:09:06] 2025-11-27 02:07:57,539 | INFO     | did not find any defunct processes belonging to 13609
[2025-11-27 03:09:06] 2025-11-27 02:07:57,542 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 03:09:06] 2025-11-27 02:07:57,542 | INFO     | ready for new job
[2025-11-27 03:09:06] 2025-11-27 02:07:57,542 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 03:09:06] 2025-11-27 02:07:57,547 | INFO     | ***************************************
[2025-11-27 03:09:06] 2025-11-27 02:07:57,547 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 03:09:06] 2025-11-27 02:07:57,547 | INFO     | ***************************************
[2025-11-27 03:09:06] 2025-11-27 02:07:57,547 | INFO     | 
[2025-11-27 03:09:06] 2025-11-27 02:07:57,548 | INFO     | pilot is running in a VM
[2025-11-27 03:09:06] 2025-11-27 02:07:57,548 | INFO     | architecture information:
[2025-11-27 03:09:06] 2025-11-27 02:07:57,555 | INFO     | executing command: cat /etc/os-release
[2025-11-27 03:09:06] 2025-11-27 02:07:57,764 | INFO     | cat /etc/os-release:
[2025-11-27 03:09:06] NAME="CentOS Linux"
[2025-11-27 03:09:06] VERSION="7 (Core)"
[2025-11-27 03:09:06] ID="centos"
[2025-11-27 03:09:06] ID_LIKE="rhel fedora"
[2025-11-27 03:09:06] VERSION_ID="7"
[2025-11-27 03:09:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 03:09:06] ANSI_COLOR="0;31"
[2025-11-27 03:09:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 03:09:06] HOME_URL="https://www.centos.org/"
[2025-11-27 03:09:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 03:09:06] 
[2025-11-27 03:09:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 03:09:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 03:09:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 03:09:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 03:09:06] 
[2025-11-27 03:09:06] 2025-11-27 02:07:57,767 | INFO     | ***************************************
[2025-11-27 03:09:06] 2025-11-27 02:07:58,271 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-27 03:09:06] 2025-11-27 02:07:58,549 | INFO     | sufficient remaining disk space (495838035968 B)
[2025-11-27 03:09:06] 2025-11-27 02:07:58,549 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 03:09:06] 2025-11-27 02:07:58,550 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 03:09:06] 2025-11-27 02:07:58,550 | INFO     | update_server=False
[2025-11-27 03:09:06] 2025-11-27 02:07:58,550 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 03:09:06] 2025-11-27 02:07:58,671 | INFO     | all data control threads have been joined
[2025-11-27 03:09:06] 2025-11-27 02:07:58,881 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:09:06] 2025-11-27 02:07:58,882 | INFO     | aborting loop
[2025-11-27 03:09:06] 2025-11-27 02:07:59,556 | INFO     | [job] retrieve thread has finished
[2025-11-27 03:09:06] 2025-11-27 02:07:59,678 | INFO     | [data] control thread has finished
[2025-11-27 03:09:06] 2025-11-27 02:07:59,726 | INFO     | all payload control threads have been joined
[2025-11-27 03:09:06] 2025-11-27 02:07:59,888 | INFO     | [job] job monitor thread has finished
[2025-11-27 03:09:06] 2025-11-27 02:07:59,888 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 03:09:06] 2025-11-27 02:07:59,935 | INFO     | all job control threads have been joined
[2025-11-27 03:09:06] 2025-11-27 02:08:00,011 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 03:09:06] 2025-11-27 02:08:00,031 | INFO     | [data] copytool_in thread has finished
[2025-11-27 03:09:06] 2025-11-27 02:08:00,039 | INFO     | [job] validate thread has finished
[2025-11-27 03:09:06] 2025-11-27 02:08:00,059 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 03:09:06] 2025-11-27 02:08:00,184 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:09:06] 2025-11-27 02:08:00,385 | INFO     | [payload] validate_post thread has finished
[2025-11-27 03:09:06] 2025-11-27 02:08:00,500 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 03:09:06] 2025-11-27 02:08:00,733 | INFO     | [payload] control thread has finished
[2025-11-27 03:09:06] 2025-11-27 02:08:00,812 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 03:09:06] 2025-11-27 02:08:00,920 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 03:09:06] 2025-11-27 02:08:00,941 | INFO     | [job] control thread has finished
[2025-11-27 03:09:06] 2025-11-27 02:08:01,126 | INFO     | [payload] failed_post thread has finished
[2025-11-27 03:09:06] 2025-11-27 02:08:01,191 | INFO     | [job] queue monitor thread has finished
[2025-11-27 03:09:06] 2025-11-27 02:08:01,895 | INFO     | [data] copytool_out thread has finished
[2025-11-27 03:09:06] 2025-11-27 02:08:04,821 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 03:09:06] 2025-11-27 02:08:27,543 | INFO     | PID=7005 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 03:09:06] 2025-11-27 02:08:27,543 | INFO     | .. there are 9 such processes running
[2025-11-27 03:09:06] 2025-11-27 02:08:27,544 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 03:09:06] 2025-11-27 02:08:27,544 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 03:09:06] 2025-11-27 02:08:27,544 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 03:09:06] 2025-11-27 02:08:54,615 | INFO     | [monitor] cgroup control has ended
[2025-11-27 03:09:06] 2025-11-27 02:08:56,272 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139868276451136)>', '<ExcThread(monitor, started 139867614865152)>']
[2025-11-27 03:09:06] 2025-11-27 02:08:56,716 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 03:09:06] 2025-11-27 02:08:56,717 | INFO     | [monitor] control thread has ended
[2025-11-27 03:09:06] 2025-11-27 02:09:01,298 | INFO     | all workflow threads have been joined
[2025-11-27 03:09:06] 2025-11-27 02:09:01,299 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 03:09:06] 2025-11-27 02:09:01,299 | INFO     | traces error code: 0
[2025-11-27 03:09:06] 2025-11-27 02:09:01,299 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 03:09:06] 2025-11-27 02:09:01,666 [wrapper] ==== pilot stdout END ====
[2025-11-27 03:09:06] 2025-11-27 02:09:01,732 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 03:09:06] 2025-11-27 02:09:01,819 [wrapper] pilotpid: 7005
[2025-11-27 03:09:06] 2025-11-27 02:09:01,850 [wrapper] Pilot exit status: 0
[2025-11-27 03:09:06] 2025-11-27 02:09:02,177 [wrapper] pandaids: 6893876788
[2025-11-27 03:09:06] 2025-11-27 02:09:03,129 [wrapper] cleanup supervisor_pilot  6945 7006
[2025-11-27 03:09:06] 2025-11-27 02:09:03,236 [wrapper] Test setup, not cleaning
[2025-11-27 03:09:06] 2025-11-27 02:09:03,270 [wrapper] apfmon messages muted
[2025-11-27 03:09:06] 2025-11-27 02:09:03,329 [wrapper] ==== wrapper stdout END ====
[2025-11-27 03:09:06] 2025-11-27 02:09:03,362 [wrapper] ==== wrapper stderr END ====
[2025-11-27 03:09:06]  *** Error codes and diagnostics ***
[2025-11-27 03:09:06]     "exeErrorCode": 0,
[2025-11-27 03:09:06]     "exeErrorDiag": "",
[2025-11-27 03:09:06]     "pilotErrorCode": 0,
[2025-11-27 03:09:06]     "pilotErrorDiag": "",
[2025-11-27 03:09:06]  *** Listing of results directory ***
[2025-11-27 03:09:06] total 1344712
[2025-11-27 03:09:06] -rw-r--r--. 1 boinc boinc    576529 Nov 20 18:21 pilot3.tar.gz
[2025-11-27 03:09:06] -rwx------. 1 boinc boinc     36292 Nov 20 18:40 runpilot2-wrapper.sh
[2025-11-27 03:09:06] -rw-r--r--. 1 boinc boinc      5112 Nov 20 18:40 queuedata.json
[2025-11-27 03:09:06] -rw-r--r--. 1 boinc boinc       100 Nov 26 03:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 03:09:06] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 03:04 run_atlas
[2025-11-27 03:09:06] -rw-r--r--. 1 boinc boinc       105 Nov 26 03:04 job.xml
[2025-11-27 03:09:06] -rw-r--r--. 2 boinc boinc 413319051 Nov 26 03:04 EVNT.47493127._000773.pool.root.1
[2025-11-27 03:09:06] drwxrwx--x. 2 boinc boinc        68 Nov 26 03:04 shared
[2025-11-27 03:09:06] -rw-r--r--. 2 boinc boinc    590099 Nov 26 03:04 input.tar.gz
[2025-11-27 03:09:06] -rw-r--r--. 1 boinc boinc      6392 Nov 26 03:04 init_data.xml
[2025-11-27 03:09:06] -rw-r--r--. 2 boinc boinc     15847 Nov 26 03:04 start_atlas.sh
[2025-11-27 03:09:06] -rw-r--r--. 1 boinc boinc         0 Nov 26 03:04 boinc_lockfile
[2025-11-27 03:09:06] -rw-r--r--. 1 boinc boinc      2784 Nov 26 03:05 pandaJob.out
[2025-11-27 03:09:06] -rw-------. 1 boinc boinc    991877 Nov 26 03:08 agis_schedconf.cvmfs.json
[2025-11-27 03:09:06] drwx------. 5 boinc boinc      4096 Nov 26 03:08 pilot3
[2025-11-27 03:09:06] -rw-r--r--. 1 boinc boinc       533 Nov 27 02:47 boinc_task_state.xml
[2025-11-27 03:09:06] -rw-------. 1 boinc boinc 931803865 Nov 27 03:04 HITS.47523449._007725.pool.root.1
[2025-11-27 03:09:06] -rw-------. 1 boinc boinc      1029 Nov 27 03:06 memory_monitor_summary.json
[2025-11-27 03:09:06] -rw-------. 1 boinc boinc   1516240 Nov 27 03:06 agis_ddmendpoints.agis.ALL.json
[2025-11-27 03:09:06] -rw-------. 1 boinc boinc   2477885 Nov 27 03:06 log.47523449._007725.job.log.tgz.1
[2025-11-27 03:09:06] -rw-------. 1 boinc boinc        95 Nov 27 03:07 pilot_heartbeat.json
[2025-11-27 03:09:06] -rw-------. 1 boinc boinc      7945 Nov 27 03:07 heartbeat.json
[2025-11-27 03:09:06] -rw-r--r--. 1 boinc boinc        29 Nov 27 03:08 wrapper_checkpoint.txt
[2025-11-27 03:09:06] -rw-r--r--. 1 boinc boinc      8192 Nov 27 03:08 boinc_mmap_file
[2025-11-27 03:09:06] -rw-------. 1 boinc boinc      4883 Nov 27 03:09 pilotlog.txt
[2025-11-27 03:09:06] -rw-------. 1 boinc boinc  11502196 Nov 27 03:09 log.47523449._007725.job.log.1
[2025-11-27 03:09:06] -rw-------. 1 boinc boinc       353 Nov 27 03:09 output.list
[2025-11-27 03:09:06] -rw-r--r--. 1 boinc boinc       620 Nov 27 03:09 runtime_log
[2025-11-27 03:09:06] -rw-------. 1 boinc boinc  13998080 Nov 27 03:09 result.tar.gz
[2025-11-27 03:09:06] -rw-r--r--. 1 boinc boinc      8817 Nov 27 03:09 runtime_log.err
[2025-11-27 03:09:06] -rw-------. 1 boinc boinc       662 Nov 27 03:09 g16NDmapNg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3MIKDmNzKBBo.diag
[2025-11-27 03:09:06] -rw-r--r--. 1 boinc boinc     21455 Nov 27 03:09 stderr.txt
[2025-11-27 03:09:06] HITS file was successfully produced:
[2025-11-27 03:09:06] -rw-------. 1 boinc boinc 931803865 Nov 27 03:04 shared/HITS.pool.root.1
[2025-11-27 03:09:06]  *** Contents of shared directory: ***
[2025-11-27 03:09:06] total 1327868
[2025-11-27 03:09:06] -rw-r--r--. 2 boinc boinc 413319051 Nov 26 03:04 ATLAS.root_0
[2025-11-27 03:09:06] -rw-r--r--. 2 boinc boinc    590099 Nov 26 03:04 input.tar.gz
[2025-11-27 03:09:06] -rw-r--r--. 2 boinc boinc     15847 Nov 26 03:04 start_atlas.sh
[2025-11-27 03:09:06] -rw-------. 1 boinc boinc 931803865 Nov 27 03:04 HITS.pool.root.1
[2025-11-27 03:09:06] -rw-------. 1 boinc boinc  13998080 Nov 27 03:09 result.tar.gz
03:09:07 (3194): run_atlas exited; CPU time 324728.758074
03:09:07 (3194): called boinc_finish(0)

</stderr_txt>
]]>

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