Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:46:31 (1442120): wrapper (7.7.26015): starting
09:46:31 (1442120): wrapper: running run_atlas (--nthreads 9)
[2025-11-23 09:46:31] Arguments: --nthreads 9
[2025-11-23 09:46:31] Threads: 9
[2025-11-23 09:46:31] Checking for CVMFS
[2025-11-23 09:46:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 09:46:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 09:46:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 09:46:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 09:46:32] 2.13.3.0 12161 25868 323592 153211 3 446 25540450 40960001 18547 16776704 0 65154975 99.553 77803521 39005 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 09:46:32] CVMFS is ok
[2025-11-23 09:46:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 09:46:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 09:46:32] Further information can be found at the LHC@home message board.
[2025-11-23 09:46:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 09:46:32] Checking for apptainer binary...
[2025-11-23 09:46:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 09:46:32] Running /usr/bin/apptainer --version
[2025-11-23 09:46:32] apptainer version 1.4.4-1.el9
[2025-11-23 09:46:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 09:46:32] c6-5-7-1.aglt2.org
[2025-11-23 09:46:32] apptainer works
[2025-11-23 09:46:32] Set ATHENA_PROC_NUMBER=9
[2025-11-23 09:46:32] Set ATHENA_CORE_NUMBER=9
[2025-11-23 09:46:32] Starting ATLAS job with PandaID=6895345480
[2025-11-23 09:46:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 15:00:13]  *** The last 200 lines of the pilot log: ***
[2025-11-24 15:00:13] 2025-11-24 18:15:41,232 | INFO     | monitor loop #5785: job 0:6895345480 is in state 'finished'
[2025-11-24 15:00:13] 2025-11-24 18:15:41,232 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 15:00:13] 2025-11-24 18:15:42,581 | INFO     | time since job start (98930s) is within the limit (172800.0s)
[2025-11-24 15:00:13] 2025-11-24 18:15:43,738 | INFO     | monitor loop #5786: job 0:6895345480 is in state 'finished'
[2025-11-24 15:00:13] 2025-11-24 18:15:43,738 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 15:00:13] 2025-11-24 18:15:44,689 | INFO     | time since job start (98932s) is within the limit (172800.0s)
[2025-11-24 15:00:13] 2025-11-24 18:15:46,245 | INFO     | monitor loop #5787: job 0:6895345480 is in state 'finished'
[2025-11-24 15:00:13] 2025-11-24 18:15:46,250 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 15:00:13] 2025-11-24 18:15:46,700 | INFO     | time since job start (98934s) is within the limit (172800.0s)
[2025-11-24 15:00:13] 2025-11-24 18:15:48,707 | INFO     | time since job start (98936s) is within the limit (172800.0s)
[2025-11-24 15:00:13] 2025-11-24 18:15:48,810 | INFO     | monitor loop #5788: job 0:6895345480 is in state 'finished'
[2025-11-24 15:00:13] 2025-11-24 18:15:48,810 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 15:00:13] 2025-11-24 18:15:51,418 | INFO     | monitor loop #5789: job 0:6895345480 is in state 'finished'
[2025-11-24 15:00:13] 2025-11-24 18:15:51,418 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 15:00:13] 2025-11-24 18:15:51,741 | INFO     | PID=1445999 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 15:00:13] 2025-11-24 18:15:51,741 | INFO     | .. there are 26 such processes running
[2025-11-24 15:00:13] 2025-11-24 18:15:52,573 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 15:00:13] 2025-11-24 18:15:52,705 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2827.056982142857
[2025-11-24 15:00:13] 2025-11-24 18:15:52,742 | INFO     | time since job start (98940s) is within the limit (172800.0s)
[2025-11-24 15:00:13] 2025-11-24 18:15:52,778 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895345480/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 15:00:13] 2025-11-24 18:15:52,778 | INFO     | extracted standard info from prmon json
[2025-11-24 15:00:13] 2025-11-24 18:15:52,779 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 15:00:13] 2025-11-24 18:15:52,779 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 15:00:13] 2025-11-24 18:15:53,044 | INFO     | fitting pss+swap vs Time
[2025-11-24 15:00:13] 2025-11-24 18:15:53,086 | INFO     | sum of square deviations: 1320958482448.5237
[2025-11-24 15:00:13] 2025-11-24 18:15:53,276 | INFO     | sum of deviations: 8239197767091.443
[2025-11-24 15:00:13] 2025-11-24 18:15:53,277 | INFO     | mean x: 1763958668.541024
[2025-11-24 15:00:13] 2025-11-24 18:15:53,277 | INFO     | mean y: 3010630.5194324492
[2025-11-24 15:00:13] 2025-11-24 18:15:53,277 | INFO     | intersect: -10999306638.487665
[2025-11-24 15:00:13] 2025-11-24 18:15:53,279 | INFO     | chi2: 25.29415202073504
[2025-11-24 15:00:13] 2025-11-24 18:15:53,285 | INFO     | sum of square deviations: 1308776573420.096
[2025-11-24 15:00:13] 2025-11-24 18:15:53,456 | INFO     | sum of deviations: 8796636724259.51
[2025-11-24 15:00:13] 2025-11-24 18:15:53,456 | INFO     | mean x: 1763958516.0550742
[2025-11-24 15:00:13] 2025-11-24 18:15:53,457 | INFO     | mean y: 3017607.207920792
[2025-11-24 15:00:13] 2025-11-24 18:15:53,457 | INFO     | intersect: -11853018463.067692
[2025-11-24 15:00:13] 2025-11-24 18:15:53,459 | INFO     | chi2: 22.058157593104713
[2025-11-24 15:00:13] 2025-11-24 18:15:53,459 | INFO     | current chi2=22.058157593104713 (change=12.793448956017977 %)
[2025-11-24 15:00:13] 2025-11-24 18:15:53,460 | INFO     | right removable region: 1615
[2025-11-24 15:00:13] 2025-11-24 18:15:53,561 | INFO     | sum of square deviations: 1308772083210.0996
[2025-11-24 15:00:13] 2025-11-24 18:15:53,647 | INFO     | sum of deviations: 7605819116333.437
[2025-11-24 15:00:13] 2025-11-24 18:15:53,648 | INFO     | mean x: 1763958821.0550742
[2025-11-24 15:00:13] 2025-11-24 18:15:53,648 | INFO     | mean y: 3018556.714108911
[2025-11-24 15:00:13] 2025-11-24 18:15:53,648 | INFO     | intersect: -10248080082.782103
[2025-11-24 15:00:13] 2025-11-24 18:15:53,649 | INFO     | chi2: 21.7763268952651
[2025-11-24 15:00:13] 2025-11-24 18:15:53,650 | INFO     | current chi2=21.7763268952651 (change=13.907661828655812 %)
[2025-11-24 15:00:13] 2025-11-24 18:15:53,650 | INFO     | left removable region: 10
[2025-11-24 15:00:13] 2025-11-24 18:15:53,651 | INFO     | sum of square deviations: 1282231643671.3008
[2025-11-24 15:00:13] 2025-11-24 18:15:53,697 | INFO     | sum of deviations: 7684144275881.858
[2025-11-24 15:00:13] 2025-11-24 18:15:53,697 | INFO     | mean x: 1763958790.5862927
[2025-11-24 15:00:13] 2025-11-24 18:15:53,697 | INFO     | mean y: 3034316.5750778816
[2025-11-24 15:00:13] 2025-11-24 18:15:53,697 | INFO     | intersect: -10567999326.586079
[2025-11-24 15:00:13] 2025-11-24 18:15:53,699 | INFO     | chi2: 15.053884149990067
[2025-11-24 15:00:13] 2025-11-24 18:15:53,699 | INFO     | current memory leak: 5.99 B/s (using 1605 data points, chi2=15.05)
[2025-11-24 15:00:13] 2025-11-24 18:15:53,705 | INFO     | could have reported an average CPU frequency of 2911 MHz (57 samples)
[2025-11-24 15:00:13] 2025-11-24 18:15:53,705 | INFO     | ..............................
[2025-11-24 15:00:13] 2025-11-24 18:15:53,705 | INFO     | . Timing measurements:
[2025-11-24 15:00:13] 2025-11-24 18:15:53,705 | INFO     | . get job = 0 s
[2025-11-24 15:00:13] 2025-11-24 18:15:53,705 | INFO     | . initial setup = 3 s
[2025-11-24 15:00:13] 2025-11-24 18:15:53,705 | INFO     | . payload setup = 12 s
[2025-11-24 15:00:13] 2025-11-24 18:15:53,706 | INFO     | . stage-in = 0 s
[2025-11-24 15:00:13] 2025-11-24 18:15:53,706 | INFO     | . payload execution = 98854 s
[2025-11-24 15:00:13] 2025-11-24 18:15:53,706 | INFO     | . stage-out = 9 s
[2025-11-24 15:00:13] 2025-11-24 18:15:53,706 | INFO     | . log creation = 2 s
[2025-11-24 15:00:13] 2025-11-24 18:15:53,706 | INFO     | ..............................
[2025-11-24 15:00:13] 2025-11-24 18:15:54,065 | INFO     | 
[2025-11-24 15:00:13] 2025-11-24 18:15:54,066 | INFO     | job summary report
[2025-11-24 15:00:13] 2025-11-24 18:15:54,066 | INFO     | --------------------------------------------------
[2025-11-24 15:00:13] 2025-11-24 18:15:54,066 | INFO     | PanDA job id: 6895345480
[2025-11-24 15:00:13] 2025-11-24 18:15:54,066 | INFO     | task id: 47556149
[2025-11-24 15:00:13] 2025-11-24 18:15:54,066 | INFO     | errors: (none)
[2025-11-24 15:00:13] 2025-11-24 18:15:54,066 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 15:00:13] 2025-11-24 18:15:54,066 | INFO     | pilot state: finished 
[2025-11-24 15:00:13] 2025-11-24 18:15:54,066 | INFO     | transexitcode: 0
[2025-11-24 15:00:13] 2025-11-24 18:15:54,066 | INFO     | exeerrorcode: 0
[2025-11-24 15:00:13] 2025-11-24 18:15:54,066 | INFO     | exeerrordiag: 
[2025-11-24 15:00:13] 2025-11-24 18:15:54,066 | INFO     | exitcode: 0
[2025-11-24 15:00:13] 2025-11-24 18:15:54,066 | INFO     | exitmsg: OK
[2025-11-24 15:00:13] 2025-11-24 18:15:54,066 | INFO     | cpuconsumptiontime: 245659 s
[2025-11-24 15:00:13] 2025-11-24 18:15:54,067 | INFO     | nevents: 1000
[2025-11-24 15:00:13] 2025-11-24 18:15:54,067 | INFO     | neventsw: 0
[2025-11-24 15:00:13] 2025-11-24 18:15:54,067 | INFO     | pid: 1452410
[2025-11-24 15:00:13] 2025-11-24 18:15:54,067 | INFO     | pgrp: 1452410
[2025-11-24 15:00:13] 2025-11-24 18:15:54,067 | INFO     | corecount: 9
[2025-11-24 15:00:13] 2025-11-24 18:15:54,067 | INFO     | event service: False
[2025-11-24 15:00:13] 2025-11-24 18:15:54,067 | INFO     | sizes: {0: 2298582, 1: 2298781, 9: 2299043, 12: 2299071, 98872: 2369075, 98882: 2379044, 98922: 2379234}
[2025-11-24 15:00:13] 2025-11-24 18:15:54,067 | INFO     | --------------------------------------------------
[2025-11-24 15:00:13] 2025-11-24 18:15:54,067 | INFO     | 
[2025-11-24 15:00:13] 2025-11-24 18:15:54,067 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-24 15:00:13] 2025-11-24 18:15:54,247 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 15:00:13] 2025-11-24 18:15:54,247 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 15:00:13] 2025-11-24 18:15:54,247 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 15:00:13] 2025-11-24 18:15:54,247 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 15:00:13] 2025-11-24 18:15:54,247 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 15:00:13] 2025-11-24 18:15:54,247 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 15:00:13] 2025-11-24 18:15:54,247 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 15:00:13] 2025-11-24 18:15:54,248 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 15:00:13] 2025-11-24 18:15:54,248 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 15:00:13] 2025-11-24 18:15:54,248 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 15:00:13] 2025-11-24 18:15:54,248 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 15:00:13] 2025-11-24 18:15:54,248 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 15:00:13] 2025-11-24 18:15:54,248 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 15:00:13] 2025-11-24 18:15:54,248 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 15:00:13] 2025-11-24 18:15:54,248 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 15:00:13] 2025-11-24 18:15:54,248 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 15:00:13] 2025-11-24 18:15:54,248 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 15:00:13] 2025-11-24 18:15:54,248 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 15:00:13] 2025-11-24 18:15:54,248 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 15:00:13] 2025-11-24 18:15:54,248 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 15:00:13] 2025-11-24 18:15:54,249 | INFO     | job 6895345480 has completed (purged errors)
[2025-11-24 15:00:13] 2025-11-24 18:15:54,249 | INFO     | overall cleanup function is called
[2025-11-24 15:00:13] 2025-11-24 18:15:55,330 | INFO     | --- collectZombieJob: --- 10, [1452410]
[2025-11-24 15:00:13] 2025-11-24 18:15:55,330 | INFO     | zombie collector waiting for pid 1452410
[2025-11-24 15:00:13] 2025-11-24 18:15:55,330 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 15:00:13] 2025-11-24 18:15:55,330 | INFO     | collected zombie processes
[2025-11-24 15:00:13] 2025-11-24 18:15:55,330 | INFO     | will attempt to kill all subprocesses of pid=1452410
[2025-11-24 15:00:13] 2025-11-24 18:15:56,270 | INFO     | process IDs to be killed: [1452410] (in reverse order)
[2025-11-24 15:00:13] 2025-11-24 18:15:56,582 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 15:00:13] 2025-11-24 18:15:56,582 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 15:00:13] 2025-11-24 18:15:56,607 | INFO     | did not find any defunct processes belonging to 1452410
[2025-11-24 15:00:13] 2025-11-24 18:15:56,637 | INFO     | did not find any defunct processes belonging to 1452410
[2025-11-24 15:00:13] 2025-11-24 18:15:56,643 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 15:00:13] 2025-11-24 18:15:56,643 | INFO     | ready for new job
[2025-11-24 15:00:13] 2025-11-24 18:15:56,644 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 15:00:13] 2025-11-24 18:15:56,656 | INFO     | ***************************************
[2025-11-24 15:00:13] 2025-11-24 18:15:56,656 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 15:00:13] 2025-11-24 18:15:56,656 | INFO     | ***************************************
[2025-11-24 15:00:13] 2025-11-24 18:15:56,656 | INFO     | 
[2025-11-24 15:00:13] 2025-11-24 18:15:56,659 | INFO     | architecture information:
[2025-11-24 15:00:13] 2025-11-24 18:15:56,666 | INFO     | executing command: cat /etc/os-release
[2025-11-24 15:00:13] 2025-11-24 18:15:56,724 | INFO     | cat /etc/os-release:
[2025-11-24 15:00:13] NAME="CentOS Linux"
[2025-11-24 15:00:13] VERSION="7 (Core)"
[2025-11-24 15:00:13] ID="centos"
[2025-11-24 15:00:13] ID_LIKE="rhel fedora"
[2025-11-24 15:00:13] VERSION_ID="7"
[2025-11-24 15:00:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 15:00:13] ANSI_COLOR="0;31"
[2025-11-24 15:00:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 15:00:13] HOME_URL="https://www.centos.org/"
[2025-11-24 15:00:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 15:00:13] 
[2025-11-24 15:00:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 15:00:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 15:00:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 15:00:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 15:00:13] 
[2025-11-24 15:00:13] 2025-11-24 18:15:56,725 | INFO     | ***************************************
[2025-11-24 15:00:13] 2025-11-24 18:15:57,229 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-24 15:00:13] 2025-11-24 18:15:57,274 | INFO     | sufficient remaining disk space (69391613952 B)
[2025-11-24 15:00:13] 2025-11-24 18:15:57,275 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 15:00:13] 2025-11-24 18:15:57,275 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 15:00:13] 2025-11-24 18:15:57,275 | INFO     | update_server=False
[2025-11-24 15:00:13] 2025-11-24 18:15:57,275 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 15:00:13] 2025-11-24 18:15:57,276 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 15:00:13] 2025-11-24 18:15:57,287 | INFO     | all data control threads have been joined
[2025-11-24 15:00:13] 2025-11-24 18:15:57,292 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 15:00:13] 2025-11-24 18:15:57,490 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 15:00:13] 2025-11-24 18:15:57,490 | INFO     | aborting loop
[2025-11-24 15:00:13] 2025-11-24 18:15:58,283 | INFO     | [job] retrieve thread has finished
[2025-11-24 15:00:13] 2025-11-24 18:15:58,295 | INFO     | [data] control thread has finished
[2025-11-24 15:00:13] 2025-11-24 18:15:58,500 | INFO     | [job] job monitor thread has finished
[2025-11-24 15:00:13] 2025-11-24 18:15:58,531 | INFO     | all payload control threads have been joined
[2025-11-24 15:00:13] 2025-11-24 18:15:58,736 | INFO     | all job control threads have been joined
[2025-11-24 15:00:13] 2025-11-24 18:15:58,783 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 15:00:13] 2025-11-24 18:15:58,784 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 15:00:13] 2025-11-24 18:15:58,855 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 15:00:13] 2025-11-24 18:15:58,856 | INFO     | [job] validate thread has finished
[2025-11-24 15:00:13] 2025-11-24 18:15:58,896 | INFO     | [data] copytool_in thread has finished
[2025-11-24 15:00:13] 2025-11-24 18:15:59,087 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 15:00:13] 2025-11-24 18:15:59,313 | INFO     | [data] copytool_out thread has finished
[2025-11-24 15:00:13] 2025-11-24 18:15:59,536 | INFO     | [payload] control thread has finished
[2025-11-24 15:00:13] 2025-11-24 18:15:59,672 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 15:00:13] 2025-11-24 18:15:59,716 | INFO     | [payload] failed_post thread has finished
[2025-11-24 15:00:13] 2025-11-24 18:15:59,742 | INFO     | [job] control thread has finished
[2025-11-24 15:00:13] 2025-11-24 18:15:59,881 | INFO     | [payload] validate_post thread has finished
[2025-11-24 15:00:13] 2025-11-24 18:16:00,093 | INFO     | [job] queue monitor thread has finished
[2025-11-24 15:00:13] 2025-11-24 18:16:01,351 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 15:00:13] 2025-11-24 18:16:02,994 | INFO     | [monitor] cgroup control has ended
[2025-11-24 15:00:13] 2025-11-24 18:16:04,289 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140407861237568)>', '<ExcThread(monitor, started 140407354672896)>']
[2025-11-24 15:00:13] 2025-11-24 18:16:09,315 | INFO     | all workflow threads have been joined
[2025-11-24 15:00:13] 2025-11-24 18:16:09,316 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 15:00:13] 2025-11-24 18:16:09,316 | INFO     | traces error code: 0
[2025-11-24 15:00:13] 2025-11-24 18:16:09,317 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 15:00:13] 2025-11-24 18:16:28,268 | INFO     | PID=1445999 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 15:00:13] 2025-11-24 18:16:28,269 | INFO     | .. there are 26 such processes running
[2025-11-24 15:00:13] 2025-11-24 18:16:28,269 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 15:00:13] 2025-11-24 18:16:28,269 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 15:00:13] 2025-11-24 18:16:28,269 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 15:00:13] 2025-11-24 18:16:28,269 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 15:00:13] 2025-11-24 18:16:28,270 | INFO     | [monitor] control thread has ended
[2025-11-24 15:00:13] 2025-11-24 18:16:29,662 [wrapper] ==== pilot stdout END ====
[2025-11-24 15:00:13] 2025-11-24 18:16:29,678 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 15:00:13] 2025-11-24 18:16:29,705 [wrapper] pilotpid: 1445999
[2025-11-24 15:00:13] 2025-11-24 18:16:29,741 [wrapper] Pilot exit status: 0
[2025-11-24 15:00:13] 2025-11-24 18:16:29,844 [wrapper] pandaids: 6895345480
[2025-11-24 15:00:13] 2025-11-24 18:16:30,200 [wrapper] cleanup supervisor_pilot 1846935 1446000
[2025-11-24 15:00:13] 2025-11-24 18:16:30,253 [wrapper] Test setup, not cleaning
[2025-11-24 15:00:13] 2025-11-24 18:16:30,296 [wrapper] apfmon messages muted
[2025-11-24 15:00:13] 2025-11-24 18:16:30,355 [wrapper] ==== wrapper stdout END ====
[2025-11-24 15:00:13] 2025-11-24 18:16:30,415 [wrapper] ==== wrapper stderr END ====
[2025-11-24 15:00:13]  *** Error codes and diagnostics ***
[2025-11-24 15:00:13]     "exeErrorCode": 0,
[2025-11-24 15:00:13]     "exeErrorDiag": "",
[2025-11-24 15:00:13]     "pilotErrorCode": 0,
[2025-11-24 15:00:13]     "pilotErrorDiag": "",
[2025-11-24 15:00:13]  *** Listing of results directory ***
[2025-11-24 15:00:13] total 1318944
[2025-11-24 15:00:13] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 12:17 pilot3.tar.gz
[2025-11-24 15:00:13] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 12:20 queuedata.json
[2025-11-24 15:00:13] -rwx------. 1 boincer umatlas     36292 Nov 22 12:22 runpilot2-wrapper.sh
[2025-11-24 15:00:13] -rw-r--r--. 1 boincer umatlas       100 Nov 23 09:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 15:00:13] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 09:46 run_atlas
[2025-11-24 15:00:13] -rw-r--r--. 1 boincer umatlas       105 Nov 23 09:46 job.xml
[2025-11-24 15:00:13] -rw-r--r--. 2 boincer umatlas 409173813 Nov 23 09:46 EVNT.47483658._001103.pool.root.1
[2025-11-24 15:00:13] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 09:46 start_atlas.sh
[2025-11-24 15:00:13] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 09:46 shared
[2025-11-24 15:00:13] -rw-r--r--. 2 boincer umatlas    590105 Nov 23 09:46 input.tar.gz
[2025-11-24 15:00:13] -rw-r--r--. 1 boincer umatlas         0 Nov 23 09:46 boinc_lockfile
[2025-11-24 15:00:13] -rw-r--r--. 1 boincer umatlas      2783 Nov 23 09:46 pandaJob.out
[2025-11-24 15:00:13] -rw-------. 1 boincer umatlas        57 Nov 23 09:46 setup.sh.local
[2025-11-24 15:00:13] -rw-------. 1 boincer umatlas    989785 Nov 23 09:46 agis_schedconf.cvmfs.json
[2025-11-24 15:00:13] drwx------. 5 boincer umatlas      4096 Nov 23 09:46 pilot3
[2025-11-24 15:00:13] -rw-r--r--. 1 boincer umatlas       533 Nov 24 12:45 boinc_task_state.xml
[2025-11-24 15:00:13] -rw-------. 1 boincer umatlas 907488438 Nov 24 13:13 HITS.47556149._000893.pool.root.1
[2025-11-24 15:00:13] -rw-------. 1 boincer umatlas      1058 Nov 24 13:15 memory_monitor_summary.json
[2025-11-24 15:00:13] -rw-------. 1 boincer umatlas   1516227 Nov 24 13:15 agis_ddmendpoints.agis.ALL.json
[2025-11-24 15:00:13] -rw-------. 1 boincer umatlas   2705041 Nov 24 13:15 log.47556149._000893.job.log.tgz.1
[2025-11-24 15:00:13] -rw-------. 1 boincer umatlas      8627 Nov 24 13:15 heartbeat.json
[2025-11-24 15:00:13] -rw-------. 1 boincer umatlas       823 Nov 24 13:16 pilotlog.txt
[2025-11-24 15:00:13] -rw-------. 1 boincer umatlas        95 Nov 24 13:16 pilot_heartbeat.json
[2025-11-24 15:00:13] -rw-------. 1 boincer umatlas  12306657 Nov 24 13:16 log.47556149._000893.job.log.1
[2025-11-24 15:00:13] -rw-------. 1 boincer umatlas       353 Nov 24 13:16 output.list
[2025-11-24 15:00:13] -rw-r--r--. 1 boincer umatlas       620 Nov 24 13:16 runtime_log
[2025-11-24 15:00:13] -rw-------. 1 boincer umatlas  15032320 Nov 24 13:16 result.tar.gz
[2025-11-24 15:00:13] -rw-r--r--. 1 boincer umatlas      9343 Nov 24 13:16 runtime_log.err
[2025-11-24 15:00:13] -rw-------. 1 boincer umatlas       660 Nov 24 13:16 1IXKDmOU6g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5IKKDmKKLZSn.diag
[2025-11-24 15:00:13] -rw-r--r--. 1 boincer umatlas      6840 Nov 24 15:00 init_data.xml
[2025-11-24 15:00:13] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 15:00 boinc_mmap_file
[2025-11-24 15:00:13] -rw-r--r--. 1 boincer umatlas        29 Nov 24 15:00 wrapper_checkpoint.txt
[2025-11-24 15:00:13] -rw-r--r--. 1 boincer umatlas     21837 Nov 24 15:00 stderr.txt
[2025-11-24 15:00:13] HITS file was successfully produced:
[2025-11-24 15:00:13] -rw-------. 1 boincer umatlas 907488438 Nov 24 13:13 shared/HITS.pool.root.1
[2025-11-24 15:00:13]  *** Contents of shared directory: ***
[2025-11-24 15:00:13] total 1301088
[2025-11-24 15:00:13] -rw-r--r--. 2 boincer umatlas 409173813 Nov 23 09:46 ATLAS.root_0
[2025-11-24 15:00:13] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 09:46 start_atlas.sh
[2025-11-24 15:00:13] -rw-r--r--. 2 boincer umatlas    590105 Nov 23 09:46 input.tar.gz
[2025-11-24 15:00:13] -rw-------. 1 boincer umatlas 907488438 Nov 24 13:13 HITS.pool.root.1
[2025-11-24 15:00:13] -rw-------. 1 boincer umatlas  15032320 Nov 24 13:16 result.tar.gz
15:00:15 (1442120): run_atlas exited; CPU time 247630.642282
15:00:15 (1442120): called boinc_finish(0)

</stderr_txt>
]]>

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