Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:57:25 (875901): wrapper (7.7.26015): starting
09:57:25 (875901): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 09:57:25] Arguments: --nthreads 8
[2025-11-23 09:57:25] Threads: 8
[2025-11-23 09:57:25] Checking for CVMFS
[2025-11-23 09:57:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 09:57:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 09:57:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 09:57:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 09:57:27] 2.13.3.0 17216 25743 496012 153211 3 724 26834269 32935937 52143 16776704 0 457256632 99.680 354892019 48206 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 09:57:27] CVMFS is ok
[2025-11-23 09:57:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 09:57:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 09:57:27] Further information can be found at the LHC@home message board.
[2025-11-23 09:57:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 09:57:27] Checking for apptainer binary...
[2025-11-23 09:57:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 09:57:27] Running /usr/bin/apptainer --version
[2025-11-23 09:57:27] apptainer version 1.4.4-1.el9
[2025-11-23 09:57:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 09:57:27] c7-9-14.aglt2.org
[2025-11-23 09:57:27] apptainer works
[2025-11-23 09:57:27] Set ATHENA_PROC_NUMBER=8
[2025-11-23 09:57:27] Set ATHENA_CORE_NUMBER=8
[2025-11-23 09:57:27] Starting ATLAS job with PandaID=6893860085
[2025-11-23 09:57:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 22:42:35]  *** The last 200 lines of the pilot log: ***
[2025-11-23 22:42:35] 2025-11-24 03:41:11,013 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 22:42:35] 2025-11-24 03:41:11,766 | INFO     | time since job start (45743s) is within the limit (172800.0s)
[2025-11-23 22:42:35] 2025-11-24 03:41:13,518 | INFO     | monitor loop #2684: job 0:6893860085 is in state 'finished'
[2025-11-23 22:42:35] 2025-11-24 03:41:13,518 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 22:42:35] 2025-11-24 03:41:13,775 | INFO     | time since job start (45745s) is within the limit (172800.0s)
[2025-11-23 22:42:35] 2025-11-24 03:41:15,787 | INFO     | time since job start (45747s) is within the limit (172800.0s)
[2025-11-23 22:42:35] 2025-11-24 03:41:16,029 | INFO     | monitor loop #2685: job 0:6893860085 is in state 'finished'
[2025-11-23 22:42:35] 2025-11-24 03:41:16,030 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 22:42:35] 2025-11-24 03:41:17,796 | INFO     | time since job start (45749s) is within the limit (172800.0s)
[2025-11-23 22:42:35] 2025-11-24 03:41:18,536 | INFO     | monitor loop #2686: job 0:6893860085 is in state 'finished'
[2025-11-23 22:42:35] 2025-11-24 03:41:18,536 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 22:42:35] 2025-11-24 03:41:20,116 | INFO     | PID=892718 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-23 22:42:35] 2025-11-24 03:41:20,116 | INFO     | .. there are 71 such processes running
[2025-11-23 22:42:35] 2025-11-24 03:41:21,041 | INFO     | monitor loop #2687: job 0:6893860085 is in state 'finished'
[2025-11-23 22:42:35] 2025-11-24 03:41:21,041 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 22:42:35] 2025-11-24 03:41:21,126 | INFO     | time since job start (45753s) is within the limit (172800.0s)
[2025-11-23 22:42:35] 2025-11-24 03:41:23,133 | INFO     | time since job start (45755s) is within the limit (172800.0s)
[2025-11-23 22:42:35] 2025-11-24 03:41:23,233 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-23 22:42:35] 2025-11-24 03:41:23,248 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3787.7795781249993
[2025-11-23 22:42:35] 2025-11-24 03:41:23,291 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6893860085/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 22:42:35] 2025-11-24 03:41:23,292 | INFO     | extracted standard info from prmon json
[2025-11-23 22:42:35] 2025-11-24 03:41:23,292 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 22:42:35] 2025-11-24 03:41:23,292 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 22:42:35] 2025-11-24 03:41:23,310 | INFO     | fitting pss+swap vs Time
[2025-11-23 22:42:35] 2025-11-24 03:41:23,310 | INFO     | sum of square deviations: 129248926664.06673
[2025-11-23 22:42:35] 2025-11-24 03:41:23,330 | INFO     | sum of deviations: 842767839979.1637
[2025-11-23 22:42:35] 2025-11-24 03:41:23,330 | INFO     | mean x: 1763932861.1713521
[2025-11-23 22:42:35] 2025-11-24 03:41:23,330 | INFO     | mean y: 2820029.858099063
[2025-11-23 22:42:35] 2025-11-24 03:41:23,330 | INFO     | intersect: -11498907107.431477
[2025-11-23 22:42:35] 2025-11-24 03:41:23,331 | INFO     | chi2: 20.286650643743368
[2025-11-23 22:42:35] 2025-11-24 03:41:23,339 | INFO     | sum of square deviations: 126671089379.66026
[2025-11-23 22:42:35] 2025-11-24 03:41:23,354 | INFO     | sum of deviations: 1099770916165.187
[2025-11-23 22:42:35] 2025-11-24 03:41:23,354 | INFO     | mean x: 1763932708.6792452
[2025-11-23 22:42:35] 2025-11-24 03:41:23,355 | INFO     | mean y: 2835231.6940700808
[2025-11-23 22:42:35] 2025-11-24 03:41:23,355 | INFO     | intersect: -15311802864.32446
[2025-11-23 22:42:35] 2025-11-24 03:41:23,355 | INFO     | chi2: 16.64053221670264
[2025-11-23 22:42:35] 2025-11-24 03:41:23,363 | INFO     | current chi2=16.64053221670264 (change=17.972993625565458 %)
[2025-11-23 22:42:35] 2025-11-24 03:41:23,363 | INFO     | right removable region: 741
[2025-11-23 22:42:35] 2025-11-24 03:41:23,364 | INFO     | sum of square deviations: 126670555629.66026
[2025-11-23 22:42:35] 2025-11-24 03:41:23,378 | INFO     | sum of deviations: 546272211151.50964
[2025-11-23 22:42:35] 2025-11-24 03:41:23,379 | INFO     | mean x: 1763933013.6792452
[2025-11-23 22:42:35] 2025-11-24 03:41:23,379 | INFO     | mean y: 2837562.766846361
[2025-11-23 22:42:35] 2025-11-24 03:41:23,379 | INFO     | intersect: -7604199312.660585
[2025-11-23 22:42:35] 2025-11-24 03:41:23,387 | INFO     | chi2: 16.0578220211169
[2025-11-23 22:42:35] 2025-11-24 03:41:23,388 | INFO     | current chi2=16.0578220211169 (change=20.845376089377712 %)
[2025-11-23 22:42:35] 2025-11-24 03:41:23,388 | INFO     | left removable region: 10
[2025-11-23 22:42:35] 2025-11-24 03:41:23,388 | INFO     | sum of square deviations: 121119935613.63362
[2025-11-23 22:42:35] 2025-11-24 03:41:23,403 | INFO     | sum of deviations: 604553688882.5736
[2025-11-23 22:42:35] 2025-11-24 03:41:23,403 | INFO     | mean x: 1763932983.1969905
[2025-11-23 22:42:35] 2025-11-24 03:41:23,403 | INFO     | mean y: 2871835.169630643
[2025-11-23 22:42:35] 2025-11-24 03:41:23,403 | INFO     | intersect: -8801559793.122509
[2025-11-23 22:42:35] 2025-11-24 03:41:23,411 | INFO     | chi2: 8.49242259307326
[2025-11-23 22:42:35] 2025-11-24 03:41:23,411 | INFO     | current memory leak: 4.99 B/s (using 731 data points, chi2=8.49)
[2025-11-23 22:42:35] 2025-11-24 03:41:23,412 | INFO     | could have reported an average CPU frequency of 3798 MHz (28 samples)
[2025-11-23 22:42:35] 2025-11-24 03:41:23,412 | INFO     | ..............................
[2025-11-23 22:42:35] 2025-11-24 03:41:23,412 | INFO     | . Timing measurements:
[2025-11-23 22:42:35] 2025-11-24 03:41:23,412 | INFO     | . get job = 0 s
[2025-11-23 22:42:35] 2025-11-24 03:41:23,412 | INFO     | . initial setup = 4 s
[2025-11-23 22:42:35] 2025-11-24 03:41:23,412 | INFO     | . payload setup = 54 s
[2025-11-23 22:42:35] 2025-11-24 03:41:23,412 | INFO     | . stage-in = 0 s
[2025-11-23 22:42:35] 2025-11-24 03:41:23,412 | INFO     | . payload execution = 45580 s
[2025-11-23 22:42:35] 2025-11-24 03:41:23,413 | INFO     | . stage-out = 5 s
[2025-11-23 22:42:35] 2025-11-24 03:41:23,413 | INFO     | . log creation = 1 s
[2025-11-23 22:42:35] 2025-11-24 03:41:23,413 | INFO     | ..............................
[2025-11-23 22:42:35] 2025-11-24 03:41:23,545 | INFO     | 
[2025-11-23 22:42:35] 2025-11-24 03:41:23,545 | INFO     | job summary report
[2025-11-23 22:42:35] 2025-11-24 03:41:23,545 | INFO     | --------------------------------------------------
[2025-11-23 22:42:35] 2025-11-24 03:41:23,545 | INFO     | PanDA job id: 6893860085
[2025-11-23 22:42:35] 2025-11-24 03:41:23,545 | INFO     | task id: 47523449
[2025-11-23 22:42:35] 2025-11-24 03:41:23,545 | INFO     | errors: (none)
[2025-11-23 22:42:35] 2025-11-24 03:41:23,545 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 22:42:35] 2025-11-24 03:41:23,545 | INFO     | pilot state: finished 
[2025-11-23 22:42:35] 2025-11-24 03:41:23,545 | INFO     | transexitcode: 0
[2025-11-23 22:42:35] 2025-11-24 03:41:23,545 | INFO     | exeerrorcode: 0
[2025-11-23 22:42:35] 2025-11-24 03:41:23,545 | INFO     | exeerrordiag: 
[2025-11-23 22:42:35] 2025-11-24 03:41:23,545 | INFO     | exitcode: 0
[2025-11-23 22:42:35] 2025-11-24 03:41:23,545 | INFO     | exitmsg: OK
[2025-11-23 22:42:35] 2025-11-24 03:41:23,545 | INFO     | cpuconsumptiontime: 137755 s
[2025-11-23 22:42:35] 2025-11-24 03:41:23,545 | INFO     | nevents: 1000
[2025-11-23 22:42:35] 2025-11-24 03:41:23,546 | INFO     | neventsw: 0
[2025-11-23 22:42:35] 2025-11-24 03:41:23,546 | INFO     | pid: 939698
[2025-11-23 22:42:35] 2025-11-24 03:41:23,546 | INFO     | pgrp: 939698
[2025-11-23 22:42:35] 2025-11-24 03:41:23,546 | INFO     | corecount: 8
[2025-11-23 22:42:35] 2025-11-24 03:41:23,546 | INFO     | event service: False
[2025-11-23 22:42:35] 2025-11-24 03:41:23,546 | INFO     | sizes: {0: 2298806, 11: 2298806, 22: 2298834, 32: 2299124, 33: 2299152, 45638: 2344802, 45639: 2344929, 45645: 2353979, 45647: 2354035, 45685: 2354281}
[2025-11-23 22:42:35] 2025-11-24 03:41:23,546 | INFO     | --------------------------------------------------
[2025-11-23 22:42:35] 2025-11-24 03:41:23,546 | INFO     | 
[2025-11-23 22:42:35] 2025-11-24 03:41:23,546 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-23 22:42:35] 2025-11-24 03:41:23,643 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 22:42:35] 2025-11-24 03:41:23,643 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 22:42:35] 2025-11-24 03:41:23,643 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 22:42:35] 2025-11-24 03:41:23,643 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 22:42:35] 2025-11-24 03:41:23,643 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 22:42:35] 2025-11-24 03:41:23,643 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 22:42:35] 2025-11-24 03:41:23,643 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 22:42:35] 2025-11-24 03:41:23,643 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 22:42:35] 2025-11-24 03:41:23,643 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 22:42:35] 2025-11-24 03:41:23,643 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 22:42:35] 2025-11-24 03:41:23,643 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 22:42:35] 2025-11-24 03:41:23,643 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 22:42:35] 2025-11-24 03:41:23,643 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 22:42:35] 2025-11-24 03:41:23,643 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 22:42:35] 2025-11-24 03:41:23,643 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 22:42:35] 2025-11-24 03:41:23,643 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 22:42:35] 2025-11-24 03:41:23,643 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 22:42:35] 2025-11-24 03:41:23,643 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 22:42:35] 2025-11-24 03:41:23,644 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 22:42:35] 2025-11-24 03:41:23,644 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 22:42:35] 2025-11-24 03:41:23,644 | INFO     | job 6893860085 has completed (purged errors)
[2025-11-23 22:42:35] 2025-11-24 03:41:23,644 | INFO     | overall cleanup function is called
[2025-11-23 22:42:35] 2025-11-24 03:41:24,665 | INFO     | --- collectZombieJob: --- 10, [939698]
[2025-11-23 22:42:35] 2025-11-24 03:41:24,665 | INFO     | zombie collector waiting for pid 939698
[2025-11-23 22:42:35] 2025-11-24 03:41:24,666 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 22:42:35] 2025-11-24 03:41:24,666 | INFO     | collected zombie processes
[2025-11-23 22:42:35] 2025-11-24 03:41:24,666 | INFO     | will attempt to kill all subprocesses of pid=939698
[2025-11-23 22:42:35] 2025-11-24 03:41:25,970 | INFO     | process IDs to be killed: [939698] (in reverse order)
[2025-11-23 22:42:35] 2025-11-24 03:41:26,244 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 22:42:35] 2025-11-24 03:41:26,244 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 22:42:35] 2025-11-24 03:41:26,295 | INFO     | did not find any defunct processes belonging to 939698
[2025-11-23 22:42:35] 2025-11-24 03:41:26,337 | INFO     | did not find any defunct processes belonging to 939698
[2025-11-23 22:42:35] 2025-11-24 03:41:26,350 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 22:42:35] 2025-11-24 03:41:26,351 | INFO     | ready for new job
[2025-11-23 22:42:35] 2025-11-24 03:41:26,351 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 22:42:35] 2025-11-24 03:41:26,353 | INFO     | ***************************************
[2025-11-23 22:42:35] 2025-11-24 03:41:26,354 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 22:42:35] 2025-11-24 03:41:26,354 | INFO     | ***************************************
[2025-11-23 22:42:35] 2025-11-24 03:41:26,354 | INFO     | 
[2025-11-23 22:42:35] 2025-11-24 03:41:26,358 | INFO     | architecture information:
[2025-11-23 22:42:35] 2025-11-24 03:41:26,364 | INFO     | executing command: cat /etc/os-release
[2025-11-23 22:42:35] 2025-11-24 03:41:26,404 | INFO     | cat /etc/os-release:
[2025-11-23 22:42:35] NAME="CentOS Linux"
[2025-11-23 22:42:35] VERSION="7 (Core)"
[2025-11-23 22:42:35] ID="centos"
[2025-11-23 22:42:35] ID_LIKE="rhel fedora"
[2025-11-23 22:42:35] VERSION_ID="7"
[2025-11-23 22:42:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 22:42:35] ANSI_COLOR="0;31"
[2025-11-23 22:42:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 22:42:35] HOME_URL="https://www.centos.org/"
[2025-11-23 22:42:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 22:42:35] 
[2025-11-23 22:42:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 22:42:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 22:42:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 22:42:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 22:42:35] 
[2025-11-23 22:42:35] 2025-11-24 03:41:26,405 | INFO     | ***************************************
[2025-11-23 22:42:35] 2025-11-24 03:41:26,908 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-23 22:42:35] 2025-11-24 03:41:26,960 | INFO     | sufficient remaining disk space (63122178048 B)
[2025-11-23 22:42:35] 2025-11-24 03:41:26,960 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 22:42:35] 2025-11-24 03:41:26,960 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 22:42:35] 2025-11-24 03:41:26,960 | INFO     | update_server=False
[2025-11-23 22:42:35] 2025-11-24 03:41:26,960 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 22:42:35] 2025-11-24 03:41:26,962 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 22:42:35] 2025-11-24 03:41:27,087 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 22:42:35] 2025-11-24 03:41:27,087 | INFO     | aborting loop
[2025-11-23 22:42:35] 2025-11-24 03:41:27,328 | INFO     | all data control threads have been joined
[2025-11-23 22:42:35] 2025-11-24 03:41:27,764 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 22:42:35] 2025-11-24 03:41:27,810 | INFO     | all payload control threads have been joined
[2025-11-23 22:42:35] 2025-11-24 03:41:27,967 | INFO     | [job] retrieve thread has finished
[2025-11-23 22:42:35] 2025-11-24 03:41:27,978 | INFO     | all job control threads have been joined
[2025-11-23 22:42:35] 2025-11-24 03:41:28,062 | INFO     | [payload] failed_post thread has finished
[2025-11-23 22:42:35] 2025-11-24 03:41:28,093 | INFO     | [job] job monitor thread has finished
[2025-11-23 22:42:35] 2025-11-24 03:41:28,106 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 22:42:35] 2025-11-24 03:41:28,107 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 22:42:35] 2025-11-24 03:41:28,139 | INFO     | [job] validate thread has finished
[2025-11-23 22:42:35] 2025-11-24 03:41:28,140 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 22:42:35] 2025-11-24 03:41:28,334 | INFO     | [data] control thread has finished
[2025-11-23 22:42:35] 2025-11-24 03:41:28,555 | INFO     | [data] copytool_in thread has finished
[2025-11-23 22:42:35] 2025-11-24 03:41:28,581 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 22:42:35] 2025-11-24 03:41:28,817 | INFO     | [payload] control thread has finished
[2025-11-23 22:42:35] 2025-11-24 03:41:28,971 | INFO     | [data] copytool_out thread has finished
[2025-11-23 22:42:35] 2025-11-24 03:41:28,988 | INFO     | [job] control thread has finished
[2025-11-23 22:42:35] 2025-11-24 03:41:29,130 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 22:42:35] 2025-11-24 03:41:29,145 | INFO     | [payload] validate_post thread has finished
[2025-11-23 22:42:35] 2025-11-24 03:41:29,588 | INFO     | [job] queue monitor thread has finished
[2025-11-23 22:42:35] 2025-11-24 03:41:31,774 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 22:42:35] 2025-11-24 03:41:57,837 | INFO     | PID=892718 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-23 22:42:35] 2025-11-24 03:41:57,837 | INFO     | .. there are 71 such processes running
[2025-11-23 22:42:35] 2025-11-24 03:41:57,837 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 22:42:35] 2025-11-24 03:41:57,837 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 22:42:35] 2025-11-24 03:41:57,837 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 22:42:35] 2025-11-24 03:42:08,801 | INFO     | [monitor] cgroup control has ended
[2025-11-23 22:42:35] 2025-11-24 03:42:08,955 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140619792996160)>', '<ExcThread(monitor, started 140619267680000)>']
[2025-11-23 22:42:35] 2025-11-24 03:42:09,923 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 22:42:35] 2025-11-24 03:42:09,923 | INFO     | [monitor] control thread has ended
[2025-11-23 22:42:35] 2025-11-24 03:42:13,983 | INFO     | all workflow threads have been joined
[2025-11-23 22:42:35] 2025-11-24 03:42:13,983 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 22:42:35] 2025-11-24 03:42:13,984 | INFO     | traces error code: 0
[2025-11-23 22:42:35] 2025-11-24 03:42:13,984 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 22:42:35] 2025-11-24 03:42:14,357 [wrapper] ==== pilot stdout END ====
[2025-11-23 22:42:35] 2025-11-24 03:42:14,373 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 22:42:35] 2025-11-24 03:42:14,389 [wrapper] pilotpid: 892718
[2025-11-23 22:42:35] 2025-11-24 03:42:14,410 [wrapper] Pilot exit status: 0
[2025-11-23 22:42:35] 2025-11-24 03:42:14,476 [wrapper] pandaids: 6893860085
[2025-11-23 22:42:35] 2025-11-24 03:42:14,785 [wrapper] cleanup supervisor_pilot 3063532 892719
[2025-11-23 22:42:35] 2025-11-24 03:42:14,808 [wrapper] Test setup, not cleaning
[2025-11-23 22:42:35] 2025-11-24 03:42:14,830 [wrapper] apfmon messages muted
[2025-11-23 22:42:35] 2025-11-24 03:42:14,852 [wrapper] ==== wrapper stdout END ====
[2025-11-23 22:42:35] 2025-11-24 03:42:14,902 [wrapper] ==== wrapper stderr END ====
[2025-11-23 22:42:35]  *** Error codes and diagnostics ***
[2025-11-23 22:42:36]     "exeErrorCode": 0,
[2025-11-23 22:42:36]     "exeErrorDiag": "",
[2025-11-23 22:42:36]     "pilotErrorCode": 0,
[2025-11-23 22:42:36]     "pilotErrorDiag": "",
[2025-11-23 22:42:36]  *** Listing of results directory ***
[2025-11-23 22:42:36] total 1313816
[2025-11-23 22:42:36] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 08:12 pilot3.tar.gz
[2025-11-23 22:42:36] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 08:37 queuedata.json
[2025-11-23 22:42:36] -rwx------. 1 boincer umatlas     36292 Nov 20 08:39 runpilot2-wrapper.sh
[2025-11-23 22:42:36] -rw-r--r--. 1 boincer umatlas       100 Nov 23 09:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 22:42:36] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 09:57 run_atlas
[2025-11-23 22:42:36] -rw-r--r--. 1 boincer umatlas       105 Nov 23 09:57 job.xml
[2025-11-23 22:42:36] -rw-r--r--. 2 boincer umatlas 409631899 Nov 23 09:57 EVNT.47493127._000543.pool.root.1
[2025-11-23 22:42:36] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 09:57 start_atlas.sh
[2025-11-23 22:42:36] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 09:57 shared
[2025-11-23 22:42:36] -rw-r--r--. 2 boincer umatlas    590101 Nov 23 09:57 input.tar.gz
[2025-11-23 22:42:36] -rw-r--r--. 1 boincer umatlas         0 Nov 23 09:57 boinc_lockfile
[2025-11-23 22:42:36] -rw-r--r--. 1 boincer umatlas      2785 Nov 23 09:57 pandaJob.out
[2025-11-23 22:42:36] -rw-------. 1 boincer umatlas        57 Nov 23 09:57 setup.sh.local
[2025-11-23 22:42:36] -rw-------. 1 boincer umatlas    989785 Nov 23 09:58 agis_schedconf.cvmfs.json
[2025-11-23 22:42:36] drwx------. 5 boincer umatlas      4096 Nov 23 09:58 pilot3
[2025-11-23 22:42:36] -rw-r--r--. 1 boincer umatlas       532 Nov 23 22:22 boinc_task_state.xml
[2025-11-23 22:42:36] -rw-------. 1 boincer umatlas 916565487 Nov 23 22:39 HITS.47523449._005424.pool.root.1
[2025-11-23 22:42:36] -rw-r--r--. 1 boincer umatlas      7171 Nov 23 22:40 init_data.xml
[2025-11-23 22:42:36] -rw-------. 1 boincer umatlas      1053 Nov 23 22:40 memory_monitor_summary.json
[2025-11-23 22:42:36] -rw-------. 1 boincer umatlas   1526164 Nov 23 22:40 agis_ddmendpoints.agis.ALL.json
[2025-11-23 22:42:36] -rw-------. 1 boincer umatlas   1930261 Nov 23 22:40 log.47523449._005424.job.log.tgz.1
[2025-11-23 22:42:36] -rw-------. 1 boincer umatlas        95 Nov 23 22:41 pilot_heartbeat.json
[2025-11-23 22:42:36] -rw-------. 1 boincer umatlas      8584 Nov 23 22:41 heartbeat.json
[2025-11-23 22:42:36] -rw-------. 1 boincer umatlas      4823 Nov 23 22:42 pilotlog.txt
[2025-11-23 22:42:36] -rw-------. 1 boincer umatlas   5681961 Nov 23 22:42 log.47523449._005424.job.log.1
[2025-11-23 22:42:36] -rw-------. 1 boincer umatlas       353 Nov 23 22:42 output.list
[2025-11-23 22:42:36] -rw-r--r--. 1 boincer umatlas       620 Nov 23 22:42 runtime_log
[2025-11-23 22:42:36] -rw-------. 1 boincer umatlas   7628800 Nov 23 22:42 result.tar.gz
[2025-11-23 22:42:36] -rw-------. 1 boincer umatlas       659 Nov 23 22:42 T4kLDmR3Jg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmSyHKDmWS1YUo.diag
[2025-11-23 22:42:36] -rw-r--r--. 1 boincer umatlas      9338 Nov 23 22:42 runtime_log.err
[2025-11-23 22:42:36] -rw-r--r--. 1 boincer umatlas        29 Nov 23 22:42 wrapper_checkpoint.txt
[2025-11-23 22:42:36] -rw-r--r--. 1 boincer umatlas      8192 Nov 23 22:42 boinc_mmap_file
[2025-11-23 22:42:36] -rw-r--r--. 1 boincer umatlas     21870 Nov 23 22:42 stderr.txt
[2025-11-23 22:42:36] HITS file was successfully produced:
[2025-11-23 22:42:36] -rw-------. 1 boincer umatlas 916565487 Nov 23 22:39 shared/HITS.pool.root.1
[2025-11-23 22:42:36]  *** Contents of shared directory: ***
[2025-11-23 22:42:36] total 1303172
[2025-11-23 22:42:36] -rw-r--r--. 2 boincer umatlas 409631899 Nov 23 09:57 ATLAS.root_0
[2025-11-23 22:42:36] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 09:57 start_atlas.sh
[2025-11-23 22:42:36] -rw-r--r--. 2 boincer umatlas    590101 Nov 23 09:57 input.tar.gz
[2025-11-23 22:42:36] -rw-------. 1 boincer umatlas 916565487 Nov 23 22:39 HITS.pool.root.1
[2025-11-23 22:42:36] -rw-------. 1 boincer umatlas   7628800 Nov 23 22:42 result.tar.gz
22:42:37 (875901): run_atlas exited; CPU time 138701.016222
22:42:37 (875901): called boinc_finish(0)

</stderr_txt>
]]>

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