Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:03:38 (27622): wrapper (7.7.26015): starting
02:03:38 (27622): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 02:03:38] Arguments: --nthreads 8
[2025-11-26 02:03:38] Threads: 8
[2025-11-26 02:03:38] Checking for CVMFS
[2025-11-26 02:03:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 02:03:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 02:03:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 02:03:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 02:03:41] 2.11.2.0 15591 87983 99672 153303 2 85 24083017 25165824 1338 130560 11 25419989 99.876 14028339 1782 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 02:03:41] CVMFS is ok
[2025-11-26 02:03:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 02:03:41] Checking for apptainer binary...
[2025-11-26 02:03:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 02:03:41] Running /usr/bin/apptainer --version
[2025-11-26 02:03:41] apptainer version 1.3.2-1.el7
[2025-11-26 02:03:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 02:03:56] cg-vwn260.simple-grid.lan
[2025-11-26 02:03:56] apptainer works
[2025-11-26 02:03:56] Set ATHENA_PROC_NUMBER=8
[2025-11-26 02:03:56] Set ATHENA_CORE_NUMBER=8
[2025-11-26 02:03:56] Starting ATLAS job with PandaID=6895345482
[2025-11-26 02:03:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 01:37:07]  *** The last 200 lines of the pilot log: ***
[2025-11-27 01:37:07] 2025-11-27 00:35:41,772 | INFO     | monitor loop #5684: job 0:6895345482 is in state 'finished'
[2025-11-27 01:37:07] 2025-11-27 00:35:41,773 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:37:07] 2025-11-27 00:35:42,527 | INFO     | time since job start (84493s) is within the limit (172800.0s)
[2025-11-27 01:37:07] 2025-11-27 00:35:44,276 | INFO     | monitor loop #5685: job 0:6895345482 is in state 'finished'
[2025-11-27 01:37:07] 2025-11-27 00:35:44,277 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:37:07] 2025-11-27 00:35:44,534 | INFO     | time since job start (84495s) is within the limit (172800.0s)
[2025-11-27 01:37:07] 2025-11-27 00:35:46,541 | INFO     | time since job start (84497s) is within the limit (172800.0s)
[2025-11-27 01:37:07] 2025-11-27 00:35:46,782 | INFO     | monitor loop #5686: job 0:6895345482 is in state 'finished'
[2025-11-27 01:37:07] 2025-11-27 00:35:46,783 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:37:07] 2025-11-27 00:35:48,548 | INFO     | time since job start (84499s) is within the limit (172800.0s)
[2025-11-27 01:37:07] 2025-11-27 00:35:49,291 | INFO     | monitor loop #5687: job 0:6895345482 is in state 'finished'
[2025-11-27 01:37:07] 2025-11-27 00:35:49,292 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:37:07] 2025-11-27 00:35:50,554 | INFO     | time since job start (84501s) is within the limit (172800.0s)
[2025-11-27 01:37:07] 2025-11-27 00:35:51,796 | INFO     | monitor loop #5688: job 0:6895345482 is in state 'finished'
[2025-11-27 01:37:07] 2025-11-27 00:35:51,797 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:37:07] 2025-11-27 00:35:52,561 | INFO     | time since job start (84503s) is within the limit (172800.0s)
[2025-11-27 01:37:07] 2025-11-27 00:35:52,731 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 01:37:07] 2025-11-27 00:35:52,732 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 01:37:07] 2025-11-27 00:35:52,734 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6895345482/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 01:37:07] 2025-11-27 00:35:52,735 | INFO     | extracted standard info from prmon json
[2025-11-27 01:37:07] 2025-11-27 00:35:52,735 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 01:37:07] 2025-11-27 00:35:52,735 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 01:37:07] 2025-11-27 00:35:52,761 | INFO     | fitting pss+swap vs Time
[2025-11-27 01:37:07] 2025-11-27 00:35:52,763 | INFO     | sum of square deviations: 807854315154.721
[2025-11-27 01:37:07] 2025-11-27 00:35:52,836 | INFO     | sum of deviations: 2887332249952.8447
[2025-11-27 01:37:07] 2025-11-27 00:35:52,836 | INFO     | mean x: 1764161712.605378
[2025-11-27 01:37:07] 2025-11-27 00:35:52,836 | INFO     | mean y: 2839890.211482558
[2025-11-27 01:37:07] 2025-11-27 00:35:52,836 | INFO     | intersect: -6302407122.007541
[2025-11-27 01:37:07] 2025-11-27 00:35:52,838 | INFO     | chi2: 25.28911345334276
[2025-11-27 01:37:07] 2025-11-27 00:35:52,840 | INFO     | sum of square deviations: 799080177323.5896
[2025-11-27 01:37:07] 2025-11-27 00:35:52,905 | INFO     | sum of deviations: 3342744751416.8076
[2025-11-27 01:37:07] 2025-11-27 00:35:52,906 | INFO     | mean x: 1764161560.109409
[2025-11-27 01:37:07] 2025-11-27 00:35:52,906 | INFO     | mean y: 2847803.9679066376
[2025-11-27 01:37:07] 2025-11-27 00:35:52,906 | INFO     | intersect: -7377064704.259602
[2025-11-27 01:37:07] 2025-11-27 00:35:52,908 | INFO     | chi2: 22.04678096209964
[2025-11-27 01:37:07] 2025-11-27 00:35:52,908 | INFO     | current chi2=22.04678096209964 (change=12.821060323941664 %)
[2025-11-27 01:37:07] 2025-11-27 00:35:52,908 | INFO     | right removable region: 1370
[2025-11-27 01:37:07] 2025-11-27 00:35:52,910 | INFO     | sum of square deviations: 799079249513.5884
[2025-11-27 01:37:07] 2025-11-27 00:35:52,964 | INFO     | sum of deviations: 2317463531684.6626
[2025-11-27 01:37:07] 2025-11-27 00:35:52,964 | INFO     | mean x: 1764161865.109409
[2025-11-27 01:37:07] 2025-11-27 00:35:52,965 | INFO     | mean y: 2849793.428884026
[2025-11-27 01:37:07] 2025-11-27 00:35:52,965 | INFO     | intersect: -5113514808.540835
[2025-11-27 01:37:07] 2025-11-27 00:35:52,966 | INFO     | chi2: 20.701984557028
[2025-11-27 01:37:07] 2025-11-27 00:35:52,967 | INFO     | current chi2=20.701984557028 (change=18.138749326969496 %)
[2025-11-27 01:37:07] 2025-11-27 00:35:52,967 | INFO     | left removable region: 10
[2025-11-27 01:37:07] 2025-11-27 00:35:52,969 | INFO     | sum of square deviations: 779999356630.9421
[2025-11-27 01:37:07] 2025-11-27 00:35:53,028 | INFO     | sum of deviations: 2394237729934.55
[2025-11-27 01:37:07] 2025-11-27 00:35:53,028 | INFO     | mean x: 1764161834.6183825
[2025-11-27 01:37:07] 2025-11-27 00:35:53,029 | INFO     | mean y: 2867903.713970588
[2025-11-27 01:37:07] 2025-11-27 00:35:53,029 | INFO     | intersect: -5412294032.313619
[2025-11-27 01:37:07] 2025-11-27 00:35:53,031 | INFO     | chi2: 13.57200158056476
[2025-11-27 01:37:07] 2025-11-27 00:35:53,031 | INFO     | current memory leak: 3.07 B/s (using 1360 data points, chi2=13.57)
[2025-11-27 01:37:07] 2025-11-27 00:35:53,032 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-27 01:37:07] 2025-11-27 00:35:53,032 | INFO     | ..............................
[2025-11-27 01:37:07] 2025-11-27 00:35:53,033 | INFO     | . Timing measurements:
[2025-11-27 01:37:07] 2025-11-27 00:35:53,033 | INFO     | . get job = 0 s
[2025-11-27 01:37:07] 2025-11-27 00:35:53,033 | INFO     | . initial setup = 4 s
[2025-11-27 01:37:07] 2025-11-27 00:35:53,033 | INFO     | . payload setup = 173 s
[2025-11-27 01:37:07] 2025-11-27 00:35:53,033 | INFO     | . stage-in = 0 s
[2025-11-27 01:37:07] 2025-11-27 00:35:53,033 | INFO     | . payload execution = 84041 s
[2025-11-27 01:37:07] 2025-11-27 00:35:53,033 | INFO     | . stage-out = 5 s
[2025-11-27 01:37:07] 2025-11-27 00:35:53,033 | INFO     | . log creation = 2 s
[2025-11-27 01:37:07] 2025-11-27 00:35:53,033 | INFO     | ..............................
[2025-11-27 01:37:07] 2025-11-27 00:35:53,194 | INFO     | 
[2025-11-27 01:37:07] 2025-11-27 00:35:53,195 | INFO     | job summary report
[2025-11-27 01:37:07] 2025-11-27 00:35:53,195 | INFO     | --------------------------------------------------
[2025-11-27 01:37:07] 2025-11-27 00:35:53,195 | INFO     | PanDA job id: 6895345482
[2025-11-27 01:37:07] 2025-11-27 00:35:53,195 | INFO     | task id: 47556149
[2025-11-27 01:37:07] 2025-11-27 00:35:53,195 | INFO     | errors: (none)
[2025-11-27 01:37:07] 2025-11-27 00:35:53,195 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 01:37:07] 2025-11-27 00:35:53,195 | INFO     | pilot state: finished 
[2025-11-27 01:37:07] 2025-11-27 00:35:53,195 | INFO     | transexitcode: 0
[2025-11-27 01:37:07] 2025-11-27 00:35:53,196 | INFO     | exeerrorcode: 0
[2025-11-27 01:37:07] 2025-11-27 00:35:53,196 | INFO     | exeerrordiag: 
[2025-11-27 01:37:07] 2025-11-27 00:35:53,196 | INFO     | exitcode: 0
[2025-11-27 01:37:07] 2025-11-27 00:35:53,196 | INFO     | exitmsg: OK
[2025-11-27 01:37:07] 2025-11-27 00:35:53,196 | INFO     | cpuconsumptiontime: 315951 s
[2025-11-27 01:37:07] 2025-11-27 00:35:53,196 | INFO     | nevents: 1000
[2025-11-27 01:37:07] 2025-11-27 00:35:53,196 | INFO     | neventsw: 0
[2025-11-27 01:37:07] 2025-11-27 00:35:53,196 | INFO     | pid: 5601
[2025-11-27 01:37:07] 2025-11-27 00:35:53,196 | INFO     | pgrp: 5601
[2025-11-27 01:37:07] 2025-11-27 00:35:53,197 | INFO     | corecount: 8
[2025-11-27 01:37:07] 2025-11-27 00:35:53,197 | INFO     | event service: False
[2025-11-27 01:37:07] 2025-11-27 00:35:53,197 | INFO     | sizes: {0: 2284034, 1: 2284118, 2: 2284317, 13: 2284317, 23: 2284373, 34: 2284401, 45: 2284557, 56: 2284585, 66: 2284613, 77: 2284641, 88: 2284697, 95: 2285267, 98
[2025-11-27 01:37:07] 2025-11-27 00:35:53,197 | INFO     | --------------------------------------------------
[2025-11-27 01:37:07] 2025-11-27 00:35:53,197 | INFO     | 
[2025-11-27 01:37:07] 2025-11-27 00:35:53,197 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-27 01:37:07] 2025-11-27 00:35:53,247 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 01:37:07] 2025-11-27 00:35:53,247 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 01:37:07] 2025-11-27 00:35:53,247 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 01:37:07] 2025-11-27 00:35:53,247 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 01:37:07] 2025-11-27 00:35:53,247 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 01:37:07] 2025-11-27 00:35:53,247 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 01:37:07] 2025-11-27 00:35:53,248 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 01:37:07] 2025-11-27 00:35:53,248 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 01:37:07] 2025-11-27 00:35:53,248 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 01:37:07] 2025-11-27 00:35:53,248 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 01:37:07] 2025-11-27 00:35:53,248 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 01:37:07] 2025-11-27 00:35:53,248 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 01:37:07] 2025-11-27 00:35:53,248 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 01:37:07] 2025-11-27 00:35:53,248 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 01:37:07] 2025-11-27 00:35:53,248 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 01:37:07] 2025-11-27 00:35:53,248 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 01:37:07] 2025-11-27 00:35:53,248 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 01:37:07] 2025-11-27 00:35:53,249 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 01:37:07] 2025-11-27 00:35:53,249 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 01:37:07] 2025-11-27 00:35:53,249 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 01:37:07] 2025-11-27 00:35:53,249 | INFO     | job 6895345482 has completed (purged errors)
[2025-11-27 01:37:07] 2025-11-27 00:35:53,249 | INFO     | overall cleanup function is called
[2025-11-27 01:37:07] 2025-11-27 00:35:54,265 | INFO     | --- collectZombieJob: --- 10, [5601]
[2025-11-27 01:37:07] 2025-11-27 00:35:54,266 | INFO     | zombie collector waiting for pid 5601
[2025-11-27 01:37:07] 2025-11-27 00:35:54,266 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 01:37:07] 2025-11-27 00:35:54,266 | INFO     | collected zombie processes
[2025-11-27 01:37:07] 2025-11-27 00:35:54,266 | INFO     | will attempt to kill all subprocesses of pid=5601
[2025-11-27 01:37:07] 2025-11-27 00:35:54,378 | INFO     | process IDs to be killed: [5601] (in reverse order)
[2025-11-27 01:37:07] 2025-11-27 00:35:54,886 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 01:37:07] 2025-11-27 00:35:54,886 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 01:37:07] 2025-11-27 00:35:54,890 | INFO     | did not find any defunct processes belonging to 5601
[2025-11-27 01:37:07] 2025-11-27 00:35:54,892 | INFO     | did not find any defunct processes belonging to 5601
[2025-11-27 01:37:07] 2025-11-27 00:35:54,901 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 01:37:07] 2025-11-27 00:35:54,901 | INFO     | ready for new job
[2025-11-27 01:37:07] 2025-11-27 00:35:54,901 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 01:37:07] 2025-11-27 00:35:54,906 | INFO     | ***************************************
[2025-11-27 01:37:07] 2025-11-27 00:35:54,906 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 01:37:07] 2025-11-27 00:35:54,906 | INFO     | ***************************************
[2025-11-27 01:37:07] 2025-11-27 00:35:54,906 | INFO     | 
[2025-11-27 01:37:07] 2025-11-27 00:35:54,907 | INFO     | pilot is running in a VM
[2025-11-27 01:37:07] 2025-11-27 00:35:54,907 | INFO     | architecture information:
[2025-11-27 01:37:07] 2025-11-27 00:35:54,913 | INFO     | executing command: cat /etc/os-release
[2025-11-27 01:37:07] 2025-11-27 00:35:55,177 | INFO     | cat /etc/os-release:
[2025-11-27 01:37:07] NAME="CentOS Linux"
[2025-11-27 01:37:07] VERSION="7 (Core)"
[2025-11-27 01:37:07] ID="centos"
[2025-11-27 01:37:07] ID_LIKE="rhel fedora"
[2025-11-27 01:37:07] VERSION_ID="7"
[2025-11-27 01:37:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 01:37:07] ANSI_COLOR="0;31"
[2025-11-27 01:37:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 01:37:07] HOME_URL="https://www.centos.org/"
[2025-11-27 01:37:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 01:37:07] 
[2025-11-27 01:37:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 01:37:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 01:37:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 01:37:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 01:37:07] 
[2025-11-27 01:37:07] 2025-11-27 00:35:55,177 | INFO     | ***************************************
[2025-11-27 01:37:07] 2025-11-27 00:35:55,680 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-27 01:37:07] 2025-11-27 00:35:55,963 | INFO     | sufficient remaining disk space (495781412864 B)
[2025-11-27 01:37:07] 2025-11-27 00:35:55,963 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 01:37:07] 2025-11-27 00:35:55,963 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 01:37:07] 2025-11-27 00:35:55,963 | INFO     | update_server=False
[2025-11-27 01:37:07] 2025-11-27 00:35:55,964 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 01:37:07] 2025-11-27 00:35:55,964 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:37:07] 2025-11-27 00:35:55,965 | INFO     | aborting loop
[2025-11-27 01:37:07] 2025-11-27 00:35:55,974 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 01:37:07] 2025-11-27 00:35:56,302 | INFO     | all data control threads have been joined
[2025-11-27 01:37:07] 2025-11-27 00:35:56,444 | INFO     | all job control threads have been joined
[2025-11-27 01:37:07] 2025-11-27 00:35:56,969 | INFO     | [job] retrieve thread has finished
[2025-11-27 01:37:07] 2025-11-27 00:35:56,972 | INFO     | [job] job monitor thread has finished
[2025-11-27 01:37:07] 2025-11-27 00:35:56,979 | INFO     | all payload control threads have been joined
[2025-11-27 01:37:07] 2025-11-27 00:35:57,074 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 01:37:07] 2025-11-27 00:35:57,308 | INFO     | [data] control thread has finished
[2025-11-27 01:37:07] 2025-11-27 00:35:57,422 | INFO     | [payload] validate_post thread has finished
[2025-11-27 01:37:07] 2025-11-27 00:35:57,450 | INFO     | [job] control thread has finished
[2025-11-27 01:37:07] 2025-11-27 00:35:57,608 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 01:37:07] 2025-11-27 00:35:57,812 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 01:37:07] 2025-11-27 00:35:57,981 | INFO     | [data] copytool_out thread has finished
[2025-11-27 01:37:07] 2025-11-27 00:35:57,985 | INFO     | [payload] control thread has finished
[2025-11-27 01:37:07] 2025-11-27 00:35:58,088 | INFO     | [data] copytool_in thread has finished
[2025-11-27 01:37:07] 2025-11-27 00:35:58,194 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:37:07] 2025-11-27 00:35:58,305 | INFO     | [payload] failed_post thread has finished
[2025-11-27 01:37:07] 2025-11-27 00:35:58,331 | INFO     | [job] validate thread has finished
[2025-11-27 01:37:07] 2025-11-27 00:35:58,402 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 01:37:07] 2025-11-27 00:35:58,499 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 01:37:07] 2025-11-27 00:35:59,200 | INFO     | [job] queue monitor thread has finished
[2025-11-27 01:37:07] 2025-11-27 00:36:02,508 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 01:37:07] 2025-11-27 00:36:25,742 | INFO     | PID=31407 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 01:37:07] 2025-11-27 00:36:25,742 | INFO     | .. there are 9 such processes running
[2025-11-27 01:37:07] 2025-11-27 00:36:25,743 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 01:37:07] 2025-11-27 00:36:25,743 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 01:37:07] 2025-11-27 00:36:25,743 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 01:37:07] 2025-11-27 00:36:55,925 | INFO     | [monitor] cgroup control has ended
[2025-11-27 01:37:07] 2025-11-27 00:36:57,433 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140153095010112)>', '<ExcThread(monitor, started 140152793966336)>']
[2025-11-27 01:37:07] 2025-11-27 00:36:57,933 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 01:37:07] 2025-11-27 00:36:57,934 | INFO     | [monitor] control thread has ended
[2025-11-27 01:37:07] 2025-11-27 00:37:02,459 | INFO     | all workflow threads have been joined
[2025-11-27 01:37:07] 2025-11-27 00:37:02,460 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 01:37:07] 2025-11-27 00:37:02,460 | INFO     | traces error code: 0
[2025-11-27 01:37:07] 2025-11-27 00:37:02,460 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 01:37:07] 2025-11-27 00:37:02,787 [wrapper] ==== pilot stdout END ====
[2025-11-27 01:37:07] 2025-11-27 00:37:02,822 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 01:37:07] 2025-11-27 00:37:02,902 [wrapper] pilotpid: 31407
[2025-11-27 01:37:07] 2025-11-27 00:37:02,992 [wrapper] Pilot exit status: 0
[2025-11-27 01:37:07] 2025-11-27 00:37:03,485 [wrapper] pandaids: 6895345482
[2025-11-27 01:37:07] 2025-11-27 00:37:04,346 [wrapper] cleanup supervisor_pilot  8467 31408
[2025-11-27 01:37:07] 2025-11-27 00:37:04,433 [wrapper] Test setup, not cleaning
[2025-11-27 01:37:07] 2025-11-27 00:37:04,502 [wrapper] apfmon messages muted
[2025-11-27 01:37:07] 2025-11-27 00:37:04,560 [wrapper] ==== wrapper stdout END ====
[2025-11-27 01:37:07] 2025-11-27 00:37:04,643 [wrapper] ==== wrapper stderr END ====
[2025-11-27 01:37:07]  *** Error codes and diagnostics ***
[2025-11-27 01:37:07]     "exeErrorCode": 0,
[2025-11-27 01:37:07]     "exeErrorDiag": "",
[2025-11-27 01:37:07]     "pilotErrorCode": 0,
[2025-11-27 01:37:07]     "pilotErrorDiag": "",
[2025-11-27 01:37:07]  *** Listing of results directory ***
[2025-11-27 01:37:07] total 1335520
[2025-11-27 01:37:07] -rw-r--r--. 1 boinc boinc    576529 Nov 22 18:17 pilot3.tar.gz
[2025-11-27 01:37:07] -rw-r--r--. 1 boinc boinc      5112 Nov 22 18:20 queuedata.json
[2025-11-27 01:37:07] -rwx------. 1 boinc boinc     36292 Nov 22 18:22 runpilot2-wrapper.sh
[2025-11-27 01:37:07] -rw-r--r--. 1 boinc boinc       100 Nov 26 02:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 01:37:07] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 02:03 run_atlas
[2025-11-27 01:37:07] -rw-r--r--. 1 boinc boinc       105 Nov 26 02:03 job.xml
[2025-11-27 01:37:07] -rw-r--r--. 1 boinc boinc      6392 Nov 26 02:03 init_data.xml
[2025-11-27 01:37:07] -rw-r--r--. 2 boinc boinc 409173813 Nov 26 02:03 EVNT.47483658._001103.pool.root.1
[2025-11-27 01:37:07] -rw-r--r--. 2 boinc boinc     15847 Nov 26 02:03 start_atlas.sh
[2025-11-27 01:37:07] drwxrwx--x. 2 boinc boinc        68 Nov 26 02:03 shared
[2025-11-27 01:37:07] -rw-r--r--. 2 boinc boinc    590102 Nov 26 02:03 input.tar.gz
[2025-11-27 01:37:07] -rw-r--r--. 1 boinc boinc         0 Nov 26 02:03 boinc_lockfile
[2025-11-27 01:37:07] -rw-r--r--. 1 boinc boinc      2783 Nov 26 02:03 pandaJob.out
[2025-11-27 01:37:07] -rw-------. 1 boinc boinc    991877 Nov 26 02:07 agis_schedconf.cvmfs.json
[2025-11-27 01:37:07] drwx------. 5 boinc boinc      4096 Nov 26 02:07 pilot3
[2025-11-27 01:37:07] -rw-r--r--. 1 boinc boinc       533 Nov 27 01:08 boinc_task_state.xml
[2025-11-27 01:37:07] -rw-------. 1 boinc boinc 927065399 Nov 27 01:32 HITS.47556149._000895.pool.root.1
[2025-11-27 01:37:07] -rw-------. 1 boinc boinc      1027 Nov 27 01:34 memory_monitor_summary.json
[2025-11-27 01:37:07] -rw-------. 1 boinc boinc   1516240 Nov 27 01:34 agis_ddmendpoints.agis.ALL.json
[2025-11-27 01:37:07] -rw-------. 1 boinc boinc   2460317 Nov 27 01:34 log.47556149._000895.job.log.tgz.1
[2025-11-27 01:37:07] -rw-------. 1 boinc boinc      8621 Nov 27 01:35 heartbeat.json
[2025-11-27 01:37:07] -rw-------. 1 boinc boinc        95 Nov 27 01:36 pilot_heartbeat.json
[2025-11-27 01:37:07] -rw-r--r--. 1 boinc boinc        29 Nov 27 01:36 wrapper_checkpoint.txt
[2025-11-27 01:37:07] -rw-r--r--. 1 boinc boinc      8192 Nov 27 01:36 boinc_mmap_file
[2025-11-27 01:37:07] -rw-------. 1 boinc boinc      4884 Nov 27 01:37 pilotlog.txt
[2025-11-27 01:37:07] -rw-------. 1 boinc boinc  11253176 Nov 27 01:37 log.47556149._000895.job.log.1
[2025-11-27 01:37:07] -rw-------. 1 boinc boinc       353 Nov 27 01:37 output.list
[2025-11-27 01:37:07] -rw-r--r--. 1 boinc boinc       620 Nov 27 01:37 runtime_log
[2025-11-27 01:37:07] -rw-------. 1 boinc boinc  13731840 Nov 27 01:37 result.tar.gz
[2025-11-27 01:37:07] -rw-------. 1 boinc boinc       662 Nov 27 01:37 tmaKDmOU6g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7IKKDmHO4KNo.diag
[2025-11-27 01:37:07] -rw-r--r--. 1 boinc boinc      8817 Nov 27 01:37 runtime_log.err
[2025-11-27 01:37:07] -rw-r--r--. 1 boinc boinc     21420 Nov 27 01:37 stderr.txt
[2025-11-27 01:37:07] HITS file was successfully produced:
[2025-11-27 01:37:07] -rw-------. 1 boinc boinc 927065399 Nov 27 01:32 shared/HITS.pool.root.1
[2025-11-27 01:37:07]  *** Contents of shared directory: ***
[2025-11-27 01:37:07] total 1318932
[2025-11-27 01:37:07] -rw-r--r--. 2 boinc boinc 409173813 Nov 26 02:03 ATLAS.root_0
[2025-11-27 01:37:07] -rw-r--r--. 2 boinc boinc     15847 Nov 26 02:03 start_atlas.sh
[2025-11-27 01:37:07] -rw-r--r--. 2 boinc boinc    590102 Nov 26 02:03 input.tar.gz
[2025-11-27 01:37:07] -rw-------. 1 boinc boinc 927065399 Nov 27 01:32 HITS.pool.root.1
[2025-11-27 01:37:07] -rw-------. 1 boinc boinc  13731840 Nov 27 01:37 result.tar.gz
01:37:08 (27622): run_atlas exited; CPU time 316526.335654
01:37:08 (27622): called boinc_finish(0)

</stderr_txt>
]]>

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