Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:18:58 (3279308): wrapper (7.7.26015): starting
20:18:58 (3279308): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 20:18:58] Arguments: --nthreads 8
[2025-11-23 20:18:58] Threads: 8
[2025-11-23 20:18:58] Checking for CVMFS
[2025-11-23 20:18:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 20:19:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 20:19:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 20:19:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 20:19:01] 2.13.3.0 12161 26501 320588 153227 0 447 34471256 40960000 17673 16776704 0 67042571 99.549 80830227 38978 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 20:19:01] CVMFS is ok
[2025-11-23 20:19:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 20:19:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 20:19:01] Further information can be found at the LHC@home message board.
[2025-11-23 20:19:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 20:19:01] Checking for apptainer binary...
[2025-11-23 20:19:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 20:19:01] Running /usr/bin/apptainer --version
[2025-11-23 20:19:01] apptainer version 1.4.4-1.el9
[2025-11-23 20:19:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 20:19:02] c6-5-7-1.aglt2.org
[2025-11-23 20:19:02] apptainer works
[2025-11-23 20:19:02] Set ATHENA_PROC_NUMBER=8
[2025-11-23 20:19:02] Set ATHENA_CORE_NUMBER=8
[2025-11-23 20:19:02] Starting ATLAS job with PandaID=6895336001
[2025-11-23 20:19:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 11:31:19]  *** The last 200 lines of the pilot log: ***
[2025-11-25 11:31:19] 2025-11-25 16:29:44,007 | INFO     | job 6895336001 has finished - writing final server update
[2025-11-25 11:31:19] 2025-11-25 16:29:44,007 | INFO     | total number of processed events: 1000 (read)
[2025-11-25 11:31:19] 2025-11-25 16:29:44,008 | INFO     | executing command: lscpu
[2025-11-25 11:31:19] 2025-11-25 16:29:44,021 | INFO     | time since job start (140961s) is within the limit (172800.0s)
[2025-11-25 11:31:19] 2025-11-25 16:29:44,088 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-25 11:31:19] 2025-11-25 16:29:45,523 | INFO     | PID=3285367 has CPU usage=14.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-25 11:31:19] 2025-11-25 16:29:45,523 | INFO     | .. there are 25 such processes running
[2025-11-25 11:31:19] 2025-11-25 16:29:46,504 | INFO     | monitor loop #8114: job 0:6895336001 is in state 'finished'
[2025-11-25 11:31:19] 2025-11-25 16:29:46,505 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 11:31:19] 2025-11-25 16:29:46,524 | INFO     | time since job start (140963s) is within the limit (172800.0s)
[2025-11-25 11:31:19] 2025-11-25 16:29:48,535 | INFO     | time since job start (140965s) is within the limit (172800.0s)
[2025-11-25 11:31:19] 2025-11-25 16:29:49,010 | INFO     | monitor loop #8115: job 0:6895336001 is in state 'finished'
[2025-11-25 11:31:19] 2025-11-25 16:29:49,010 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 11:31:19] 2025-11-25 16:29:50,541 | INFO     | time since job start (140967s) is within the limit (172800.0s)
[2025-11-25 11:31:19] 2025-11-25 16:29:51,515 | INFO     | monitor loop #8116: job 0:6895336001 is in state 'finished'
[2025-11-25 11:31:19] 2025-11-25 16:29:51,515 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 11:31:19] 2025-11-25 16:29:52,395 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 11:31:19] 2025-11-25 16:29:52,413 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2875.233375
[2025-11-25 11:31:19] 2025-11-25 16:29:52,424 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895336001/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 11:31:19] 2025-11-25 16:29:52,426 | INFO     | extracted standard info from prmon json
[2025-11-25 11:31:19] 2025-11-25 16:29:52,426 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 11:31:19] 2025-11-25 16:29:52,426 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 11:31:19] 2025-11-25 16:29:52,461 | INFO     | fitting pss+swap vs Time
[2025-11-25 11:31:19] 2025-11-25 16:29:52,464 | INFO     | sum of square deviations: 3817210452691.4937
[2025-11-25 11:31:19] 2025-11-25 16:29:52,550 | INFO     | sum of deviations: 10242808338128.744
[2025-11-25 11:31:19] 2025-11-25 16:29:52,551 | INFO     | mean x: 1764017774.6881766
[2025-11-25 11:31:19] 2025-11-25 16:29:52,551 | INFO     | mean y: 2937847.2065829365
[2025-11-25 11:31:19] 2025-11-25 16:29:52,551 | INFO     | intersect: -4730491497.367116
[2025-11-25 11:31:19] 2025-11-25 16:29:52,553 | INFO     | chi2: 22.41754890788073
[2025-11-25 11:31:19] 2025-11-25 16:29:52,556 | INFO     | sum of square deviations: 3792468660473.324
[2025-11-25 11:31:19] 2025-11-25 16:29:52,563 | INFO     | time since job start (140969s) is within the limit (172800.0s)
[2025-11-25 11:31:19] 2025-11-25 16:29:52,643 | INFO     | sum of deviations: 11016751455839.389
[2025-11-25 11:31:19] 2025-11-25 16:29:52,643 | INFO     | mean x: 1764017622.1961806
[2025-11-25 11:31:19] 2025-11-25 16:29:52,644 | INFO     | mean y: 2942616.842013889
[2025-11-25 11:31:19] 2025-11-25 16:29:52,644 | INFO     | intersect: -5121356473.616562
[2025-11-25 11:31:19] 2025-11-25 16:29:52,646 | INFO     | chi2: 19.360064880038056
[2025-11-25 11:31:19] 2025-11-25 16:29:52,646 | INFO     | current chi2=19.360064880038056 (change=13.638797178079699 %)
[2025-11-25 11:31:19] 2025-11-25 16:29:52,646 | INFO     | right removable region: 2303
[2025-11-25 11:31:19] 2025-11-25 16:29:52,648 | INFO     | sum of square deviations: 3792463465713.333
[2025-11-25 11:31:19] 2025-11-25 16:29:52,734 | INFO     | sum of deviations: 9275861421708.32
[2025-11-25 11:31:19] 2025-11-25 16:29:52,734 | INFO     | mean x: 1764017927.1961806
[2025-11-25 11:31:19] 2025-11-25 16:29:52,734 | INFO     | mean y: 2943805.8111979165
[2025-11-25 11:31:19] 2025-11-25 16:29:52,734 | INFO     | intersect: -4311609514.48116
[2025-11-25 11:31:19] 2025-11-25 16:29:52,737 | INFO     | chi2: 18.067032069236223
[2025-11-25 11:31:19] 2025-11-25 16:29:52,737 | INFO     | current chi2=18.067032069236223 (change=19.40674627954135 %)
[2025-11-25 11:31:19] 2025-11-25 16:29:52,737 | INFO     | left removable region: 10
[2025-11-25 11:31:19] 2025-11-25 16:29:52,739 | INFO     | sum of square deviations: 3738403361148.76
[2025-11-25 11:31:19] 2025-11-25 16:29:52,825 | INFO     | sum of deviations: 9390767036808.402
[2025-11-25 11:31:19] 2025-11-25 16:29:52,825 | INFO     | mean x: 1764017896.7134757
[2025-11-25 11:31:19] 2025-11-25 16:29:52,825 | INFO     | mean y: 2955004.207588312
[2025-11-25 11:31:19] 2025-11-25 16:29:52,825 | INFO     | intersect: -4428209724.819044
[2025-11-25 11:31:19] 2025-11-25 16:29:52,827 | INFO     | chi2: 10.91308989267523
[2025-11-25 11:31:19] 2025-11-25 16:29:52,828 | INFO     | current memory leak: 2.51 B/s (using 2293 data points, chi2=10.91)
[2025-11-25 11:31:19] 2025-11-25 16:29:52,830 | INFO     | could have reported an average CPU frequency of 2932 MHz (80 samples)
[2025-11-25 11:31:19] 2025-11-25 16:29:52,831 | INFO     | ..............................
[2025-11-25 11:31:19] 2025-11-25 16:29:52,831 | INFO     | . Timing measurements:
[2025-11-25 11:31:19] 2025-11-25 16:29:52,831 | INFO     | . get job = 0 s
[2025-11-25 11:31:19] 2025-11-25 16:29:52,831 | INFO     | . initial setup = 6 s
[2025-11-25 11:31:19] 2025-11-25 16:29:52,831 | INFO     | . payload setup = 50 s
[2025-11-25 11:31:19] 2025-11-25 16:29:52,831 | INFO     | . stage-in = 0 s
[2025-11-25 11:31:19] 2025-11-25 16:29:52,831 | INFO     | . payload execution = 140826 s
[2025-11-25 11:31:19] 2025-11-25 16:29:52,831 | INFO     | . stage-out = 5 s
[2025-11-25 11:31:19] 2025-11-25 16:29:52,831 | INFO     | . log creation = 1 s
[2025-11-25 11:31:19] 2025-11-25 16:29:52,831 | INFO     | ..............................
[2025-11-25 11:31:19] 2025-11-25 16:29:52,932 | INFO     | 
[2025-11-25 11:31:19] 2025-11-25 16:29:52,933 | INFO     | job summary report
[2025-11-25 11:31:19] 2025-11-25 16:29:52,933 | INFO     | --------------------------------------------------
[2025-11-25 11:31:19] 2025-11-25 16:29:52,933 | INFO     | PanDA job id: 6895336001
[2025-11-25 11:31:19] 2025-11-25 16:29:52,933 | INFO     | task id: 47556137
[2025-11-25 11:31:19] 2025-11-25 16:29:52,933 | INFO     | errors: (none)
[2025-11-25 11:31:19] 2025-11-25 16:29:52,933 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 11:31:19] 2025-11-25 16:29:52,933 | INFO     | pilot state: finished 
[2025-11-25 11:31:19] 2025-11-25 16:29:52,933 | INFO     | transexitcode: 0
[2025-11-25 11:31:19] 2025-11-25 16:29:52,933 | INFO     | exeerrorcode: 0
[2025-11-25 11:31:19] 2025-11-25 16:29:52,933 | INFO     | exeerrordiag: 
[2025-11-25 11:31:19] 2025-11-25 16:29:52,933 | INFO     | exitcode: 0
[2025-11-25 11:31:19] 2025-11-25 16:29:52,933 | INFO     | exitmsg: OK
[2025-11-25 11:31:19] 2025-11-25 16:29:52,933 | INFO     | cpuconsumptiontime: 243719 s
[2025-11-25 11:31:19] 2025-11-25 16:29:52,934 | INFO     | nevents: 1000
[2025-11-25 11:31:19] 2025-11-25 16:29:52,934 | INFO     | neventsw: 0
[2025-11-25 11:31:19] 2025-11-25 16:29:52,934 | INFO     | pid: 3294148
[2025-11-25 11:31:19] 2025-11-25 16:29:52,934 | INFO     | pgrp: 3294148
[2025-11-25 11:31:19] 2025-11-25 16:29:52,934 | INFO     | corecount: 8
[2025-11-25 11:31:19] 2025-11-25 16:29:52,934 | INFO     | event service: False
[2025-11-25 11:31:19] 2025-11-25 16:29:52,934 | INFO     | sizes: {0: 2297928, 1: 2298529, 2: 2298812, 3: 2298840, 14: 2298840, 25: 2298868, 35: 2299286, 36: 2299314, 140881: 2388671, 140888: 2398517, 140898: 2398707}
[2025-11-25 11:31:19] 2025-11-25 16:29:52,934 | INFO     | --------------------------------------------------
[2025-11-25 11:31:19] 2025-11-25 16:29:52,934 | INFO     | 
[2025-11-25 11:31:19] 2025-11-25 16:29:52,934 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 11:31:19] 2025-11-25 16:29:52,958 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 11:31:19] 2025-11-25 16:29:52,959 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 11:31:19] 2025-11-25 16:29:52,959 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 11:31:19] 2025-11-25 16:29:52,959 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 11:31:19] 2025-11-25 16:29:52,959 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 11:31:19] 2025-11-25 16:29:52,959 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 11:31:19] 2025-11-25 16:29:52,959 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 11:31:19] 2025-11-25 16:29:52,959 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 11:31:19] 2025-11-25 16:29:52,959 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 11:31:19] 2025-11-25 16:29:52,960 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 11:31:19] 2025-11-25 16:29:52,960 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 11:31:19] 2025-11-25 16:29:52,960 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 11:31:19] 2025-11-25 16:29:52,960 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 11:31:19] 2025-11-25 16:29:52,960 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 11:31:19] 2025-11-25 16:29:52,960 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 11:31:19] 2025-11-25 16:29:52,960 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 11:31:19] 2025-11-25 16:29:52,960 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 11:31:19] 2025-11-25 16:29:52,960 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 11:31:19] 2025-11-25 16:29:52,960 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 11:31:19] 2025-11-25 16:29:52,960 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 11:31:19] 2025-11-25 16:29:52,961 | INFO     | job 6895336001 has completed (purged errors)
[2025-11-25 11:31:19] 2025-11-25 16:29:52,961 | INFO     | overall cleanup function is called
[2025-11-25 11:31:19] 2025-11-25 16:29:53,976 | INFO     | --- collectZombieJob: --- 10, [3294148]
[2025-11-25 11:31:19] 2025-11-25 16:29:53,976 | INFO     | zombie collector waiting for pid 3294148
[2025-11-25 11:31:19] 2025-11-25 16:29:53,976 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 11:31:19] 2025-11-25 16:29:53,977 | INFO     | collected zombie processes
[2025-11-25 11:31:19] 2025-11-25 16:29:53,977 | INFO     | will attempt to kill all subprocesses of pid=3294148
[2025-11-25 11:31:19] 2025-11-25 16:29:54,331 | INFO     | process IDs to be killed: [3294148] (in reverse order)
[2025-11-25 11:31:19] 2025-11-25 16:29:54,534 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 11:31:19] 2025-11-25 16:29:54,535 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 11:31:19] 2025-11-25 16:29:54,548 | INFO     | did not find any defunct processes belonging to 3294148
[2025-11-25 11:31:19] 2025-11-25 16:29:54,561 | INFO     | did not find any defunct processes belonging to 3294148
[2025-11-25 11:31:19] 2025-11-25 16:29:54,562 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 11:31:19] 2025-11-25 16:29:54,563 | INFO     | ready for new job
[2025-11-25 11:31:19] 2025-11-25 16:29:54,563 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 11:31:19] 2025-11-25 16:29:54,574 | INFO     | ***************************************
[2025-11-25 11:31:19] 2025-11-25 16:29:54,574 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 11:31:19] 2025-11-25 16:29:54,574 | INFO     | ***************************************
[2025-11-25 11:31:19] 2025-11-25 16:29:54,574 | INFO     | 
[2025-11-25 11:31:19] 2025-11-25 16:29:54,578 | INFO     | architecture information:
[2025-11-25 11:31:19] 2025-11-25 16:29:54,581 | INFO     | executing command: cat /etc/os-release
[2025-11-25 11:31:19] 2025-11-25 16:29:54,628 | INFO     | cat /etc/os-release:
[2025-11-25 11:31:19] NAME="CentOS Linux"
[2025-11-25 11:31:19] VERSION="7 (Core)"
[2025-11-25 11:31:19] ID="centos"
[2025-11-25 11:31:19] ID_LIKE="rhel fedora"
[2025-11-25 11:31:19] VERSION_ID="7"
[2025-11-25 11:31:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 11:31:19] ANSI_COLOR="0;31"
[2025-11-25 11:31:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 11:31:19] HOME_URL="https://www.centos.org/"
[2025-11-25 11:31:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 11:31:19] 
[2025-11-25 11:31:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 11:31:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 11:31:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 11:31:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 11:31:19] 
[2025-11-25 11:31:19] 2025-11-25 16:29:54,628 | INFO     | ***************************************
[2025-11-25 11:31:19] 2025-11-25 16:29:55,132 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 11:31:19] 2025-11-25 16:29:55,228 | INFO     | sufficient remaining disk space (68006445056 B)
[2025-11-25 11:31:19] 2025-11-25 16:29:55,228 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 11:31:19] 2025-11-25 16:29:55,228 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 11:31:19] 2025-11-25 16:29:55,228 | INFO     | update_server=False
[2025-11-25 11:31:19] 2025-11-25 16:29:55,228 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 11:31:19] 2025-11-25 16:29:55,228 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 11:31:19] 2025-11-25 16:29:55,229 | INFO     | aborting loop
[2025-11-25 11:31:19] 2025-11-25 16:29:55,254 | INFO     | all payload control threads have been joined
[2025-11-25 11:31:19] 2025-11-25 16:29:55,653 | INFO     | all data control threads have been joined
[2025-11-25 11:31:19] 2025-11-25 16:29:56,027 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 11:31:19] 2025-11-25 16:29:56,234 | INFO     | [job] retrieve thread has finished
[2025-11-25 11:31:19] 2025-11-25 16:29:56,242 | INFO     | [job] job monitor thread has finished
[2025-11-25 11:31:19] 2025-11-25 16:29:56,260 | INFO     | [payload] control thread has finished
[2025-11-25 11:31:19] 2025-11-25 16:29:56,553 | INFO     | all job control threads have been joined
[2025-11-25 11:31:19] 2025-11-25 16:29:56,663 | INFO     | [data] control thread has finished
[2025-11-25 11:31:19] 2025-11-25 16:29:57,078 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 11:31:19] 2025-11-25 16:29:57,081 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 11:31:19] 2025-11-25 16:29:57,082 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 11:31:19] 2025-11-25 16:29:57,124 | INFO     | [payload] validate_post thread has finished
[2025-11-25 11:31:19] 2025-11-25 16:29:57,383 | INFO     | [payload] failed_post thread has finished
[2025-11-25 11:31:19] 2025-11-25 16:29:57,539 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 11:31:19] 2025-11-25 16:29:57,559 | INFO     | [job] control thread has finished
[2025-11-25 11:31:19] 2025-11-25 16:29:57,579 | INFO     | [data] copytool_in thread has finished
[2025-11-25 11:31:19] 2025-11-25 16:29:57,687 | INFO     | [job] validate thread has finished
[2025-11-25 11:31:19] 2025-11-25 16:29:57,948 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 11:31:19] 2025-11-25 16:29:58,034 | INFO     | [data] copytool_out thread has finished
[2025-11-25 11:31:19] 2025-11-25 16:29:58,411 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 11:31:19] 2025-11-25 16:29:58,955 | INFO     | [job] queue monitor thread has finished
[2025-11-25 11:31:19] 2025-11-25 16:30:02,428 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 11:31:19] 2025-11-25 16:30:26,181 | INFO     | PID=3285367 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 11:31:19] 2025-11-25 16:30:26,181 | INFO     | .. there are 26 such processes running
[2025-11-25 11:31:19] 2025-11-25 16:30:26,182 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 11:31:19] 2025-11-25 16:30:26,182 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 11:31:19] 2025-11-25 16:30:26,182 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 11:31:19] 2025-11-25 16:30:43,343 | INFO     | [monitor] cgroup control has ended
[2025-11-25 11:31:19] 2025-11-25 16:30:43,386 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140403598526272)>', '<ExcThread(monitor, started 140402732553984)>']
[2025-11-25 11:31:19] 2025-11-25 16:30:44,292 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 11:31:19] 2025-11-25 16:30:44,293 | INFO     | [monitor] control thread has ended
[2025-11-25 11:31:19] 2025-11-25 16:30:48,411 | INFO     | all workflow threads have been joined
[2025-11-25 11:31:19] 2025-11-25 16:30:48,411 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 11:31:19] 2025-11-25 16:30:48,412 | INFO     | traces error code: 0
[2025-11-25 11:31:19] 2025-11-25 16:30:48,412 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 11:31:19] 2025-11-25 16:30:48,626 [wrapper] ==== pilot stdout END ====
[2025-11-25 11:31:19] 2025-11-25 16:30:48,629 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 11:31:19] 2025-11-25 16:30:48,632 [wrapper] pilotpid: 3285367
[2025-11-25 11:31:19] 2025-11-25 16:30:48,636 [wrapper] Pilot exit status: 0
[2025-11-25 11:31:19] 2025-11-25 16:30:48,647 [wrapper] pandaids: 6895336001
[2025-11-25 11:31:19] 2025-11-25 16:30:48,722 [wrapper] cleanup supervisor_pilot 1375894 3285368
[2025-11-25 11:31:19] 2025-11-25 16:30:48,724 [wrapper] Test setup, not cleaning
[2025-11-25 11:31:19] 2025-11-25 16:30:48,727 [wrapper] apfmon messages muted
[2025-11-25 11:31:19] 2025-11-25 16:30:48,729 [wrapper] ==== wrapper stdout END ====
[2025-11-25 11:31:19] 2025-11-25 16:30:48,731 [wrapper] ==== wrapper stderr END ====
[2025-11-25 11:31:19]  *** Error codes and diagnostics ***
[2025-11-25 11:31:19]     "exeErrorCode": 0,
[2025-11-25 11:31:19]     "exeErrorDiag": "",
[2025-11-25 11:31:19]     "pilotErrorCode": 0,
[2025-11-25 11:31:19]     "pilotErrorDiag": "",
[2025-11-25 11:31:19]  *** Listing of results directory ***
[2025-11-25 11:31:19] total 1348552
[2025-11-25 11:31:19] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 23:55 pilot3.tar.gz
[2025-11-25 11:31:19] -rwx------. 1 boincer umatlas     36292 Nov 22 00:06 runpilot2-wrapper.sh
[2025-11-25 11:31:19] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 00:06 queuedata.json
[2025-11-25 11:31:19] -rw-r--r--. 1 boincer umatlas       100 Nov 23 20:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 11:31:19] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 20:18 run_atlas
[2025-11-25 11:31:19] -rw-r--r--. 1 boincer umatlas       105 Nov 23 20:18 job.xml
[2025-11-25 11:31:19] -rw-r--r--. 2 boincer umatlas 410157147 Nov 23 20:18 EVNT.47483658._000263.pool.root.1
[2025-11-25 11:31:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 20:18 start_atlas.sh
[2025-11-25 11:31:19] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 20:18 shared
[2025-11-25 11:31:19] -rw-r--r--. 2 boincer umatlas    590099 Nov 23 20:18 input.tar.gz
[2025-11-25 11:31:19] -rw-r--r--. 1 boincer umatlas         0 Nov 23 20:18 boinc_lockfile
[2025-11-25 11:31:19] -rw-r--r--. 1 boincer umatlas      2785 Nov 23 20:19 pandaJob.out
[2025-11-25 11:31:19] -rw-------. 1 boincer umatlas        57 Nov 23 20:19 setup.sh.local
[2025-11-25 11:31:19] -rw-------. 1 boincer umatlas    989786 Nov 23 20:20 agis_schedconf.cvmfs.json
[2025-11-25 11:31:19] drwx------. 5 boincer umatlas      4096 Nov 23 20:20 pilot3
[2025-11-25 11:31:19] -rw-r--r--. 1 boincer umatlas       534 Nov 25 10:55 boinc_task_state.xml
[2025-11-25 11:31:19] -rw-------. 1 boincer umatlas 926000872 Nov 25 11:28 HITS.47556137._002595.pool.root.1
[2025-11-25 11:31:19] -rw-------. 1 boincer umatlas      1084 Nov 25 11:29 memory_monitor_summary.json
[2025-11-25 11:31:19] -rw-------. 1 boincer umatlas   1516240 Nov 25 11:29 agis_ddmendpoints.agis.ALL.json
[2025-11-25 11:31:19] -rw-------. 1 boincer umatlas   3061529 Nov 25 11:29 log.47556137._002595.job.log.tgz.1
[2025-11-25 11:31:19] -rw-------. 1 boincer umatlas        95 Nov 25 11:29 pilot_heartbeat.json
[2025-11-25 11:31:19] -rw-------. 1 boincer umatlas      8653 Nov 25 11:29 heartbeat.json
[2025-11-25 11:31:19] -rw-r--r--. 1 boincer umatlas      6842 Nov 25 11:30 init_data.xml
[2025-11-25 11:31:19] -rw-------. 1 boincer umatlas      4824 Nov 25 11:30 pilotlog.txt
[2025-11-25 11:31:19] -rw-------. 1 boincer umatlas  17358001 Nov 25 11:30 log.47556137._002595.job.log.1
[2025-11-25 11:31:19] -rw-------. 1 boincer umatlas       353 Nov 25 11:30 output.list
[2025-11-25 11:31:19] -rw-r--r--. 1 boincer umatlas       620 Nov 25 11:31 runtime_log
[2025-11-25 11:31:19] -rw-------. 1 boincer umatlas  20439040 Nov 25 11:31 result.tar.gz
[2025-11-25 11:31:19] -rw-------. 1 boincer umatlas       668 Nov 25 11:31 z62MDml0ug8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmcxJKDmYK0wZn.diag
[2025-11-25 11:31:19] -rw-r--r--. 1 boincer umatlas      9344 Nov 25 11:31 runtime_log.err
[2025-11-25 11:31:19] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 11:31 boinc_mmap_file
[2025-11-25 11:31:19] -rw-r--r--. 1 boincer umatlas        30 Nov 25 11:31 wrapper_checkpoint.txt
[2025-11-25 11:31:19] -rw-r--r--. 1 boincer umatlas     21901 Nov 25 11:31 stderr.txt
[2025-11-25 11:31:19] HITS file was successfully produced:
[2025-11-25 11:31:19] -rw-------. 1 boincer umatlas 926000872 Nov 25 11:28 shared/HITS.pool.root.1
[2025-11-25 11:31:19]  *** Contents of shared directory: ***
[2025-11-25 11:31:19] total 1325412
[2025-11-25 11:31:19] -rw-r--r--. 2 boincer umatlas 410157147 Nov 23 20:18 ATLAS.root_0
[2025-11-25 11:31:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 20:18 start_atlas.sh
[2025-11-25 11:31:19] -rw-r--r--. 2 boincer umatlas    590099 Nov 23 20:18 input.tar.gz
[2025-11-25 11:31:19] -rw-------. 1 boincer umatlas 926000872 Nov 25 11:28 HITS.pool.root.1
[2025-11-25 11:31:19] -rw-------. 1 boincer umatlas  20439040 Nov 25 11:31 result.tar.gz
11:31:21 (3279308): run_atlas exited; CPU time 246713.199673
11:31:21 (3279308): called boinc_finish(0)

</stderr_txt>
]]>

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