Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:41:50 (2839856): wrapper (7.7.26015): starting
04:41:50 (2839856): wrapper: running run_atlas (--nthreads 4)
[2025-11-26 04:41:50] Arguments: --nthreads 4
[2025-11-26 04:41:50] Threads: 4
[2025-11-26 04:41:50] Checking for CVMFS
[2025-11-26 04:41:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 04:41:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 04:41:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 04:41:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 04:41:50] 2.9.2.0 1682378 7910 95992 153307 1 81 27294494 36864001 0 130560 0 3336740 99.982 268469 6415 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 04:41:50] CVMFS is ok
[2025-11-26 04:41:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 04:41:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 04:41:50] Further information can be found at the LHC@home message board.
[2025-11-26 04:41:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 04:41:50] Checking for apptainer binary...
[2025-11-26 04:41:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 04:41:50] Running /usr/bin/apptainer --version
[2025-11-26 04:41:50] apptainer version 1.4.1-1.1
[2025-11-26 04:41:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 04:41:50] thA315b
[2025-11-26 04:41:50] apptainer works
[2025-11-26 04:41:50] Set ATHENA_PROC_NUMBER=4
[2025-11-26 04:41:50] Set ATHENA_CORE_NUMBER=4
[2025-11-26 04:41:50] Starting ATLAS job with PandaID=6895334571
[2025-11-26 04:41:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 10:41:33]  *** The last 200 lines of the pilot log: ***
[2025-11-26 10:41:33] 2025-11-26 09:40:31,277 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 10:41:33] 2025-11-26 09:40:31,277 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 10:41:33] 2025-11-26 09:40:31,277 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 10:41:33] 2025-11-26 09:40:31,277 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 10:41:33] 2025-11-26 09:40:31,277 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 10:41:33] 2025-11-26 09:40:31,277 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 10:41:33] 2025-11-26 09:40:31,277 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 10:41:33] 2025-11-26 09:40:31,277 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 10:41:33] 2025-11-26 09:40:31,277 | INFO     | job 6895334571 has completed (purged errors)
[2025-11-26 10:41:33] 2025-11-26 09:40:31,277 | INFO     | overall cleanup function is called
[2025-11-26 10:41:33] 2025-11-26 09:40:32,285 | INFO     | --- collectZombieJob: --- 10, [2850228]
[2025-11-26 10:41:33] 2025-11-26 09:40:32,285 | INFO     | zombie collector waiting for pid 2850228
[2025-11-26 10:41:33] 2025-11-26 09:40:32,285 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 10:41:33] 2025-11-26 09:40:32,285 | INFO     | collected zombie processes
[2025-11-26 10:41:33] 2025-11-26 09:40:32,285 | INFO     | will attempt to kill all subprocesses of pid=2850228
[2025-11-26 10:41:33] 2025-11-26 09:40:32,331 | INFO     | process IDs to be killed: [2850228] (in reverse order)
[2025-11-26 10:41:33] 2025-11-26 09:40:32,358 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 10:41:33] 2025-11-26 09:40:32,358 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 10:41:33] 2025-11-26 09:40:32,359 | INFO     | did not find any defunct processes belonging to 2850228
[2025-11-26 10:41:33] 2025-11-26 09:40:32,360 | INFO     | did not find any defunct processes belonging to 2850228
[2025-11-26 10:41:33] 2025-11-26 09:40:32,361 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 10:41:33] 2025-11-26 09:40:32,361 | INFO     | ready for new job
[2025-11-26 10:41:33] 2025-11-26 09:40:32,361 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 10:41:33] 2025-11-26 09:40:32,362 | INFO     | ***************************************
[2025-11-26 10:41:33] 2025-11-26 09:40:32,362 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 10:41:33] 2025-11-26 09:40:32,362 | INFO     | ***************************************
[2025-11-26 10:41:33] 2025-11-26 09:40:32,362 | INFO     | 
[2025-11-26 10:41:33] 2025-11-26 09:40:32,363 | INFO     | architecture information:
[2025-11-26 10:41:33] 2025-11-26 09:40:32,363 | INFO     | executing command: cat /etc/os-release
[2025-11-26 10:41:33] 2025-11-26 09:40:32,373 | INFO     | cat /etc/os-release:
[2025-11-26 10:41:33] NAME="CentOS Linux"
[2025-11-26 10:41:33] VERSION="7 (Core)"
[2025-11-26 10:41:33] ID="centos"
[2025-11-26 10:41:33] ID_LIKE="rhel fedora"
[2025-11-26 10:41:33] VERSION_ID="7"
[2025-11-26 10:41:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 10:41:33] ANSI_COLOR="0;31"
[2025-11-26 10:41:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 10:41:33] HOME_URL="https://www.centos.org/"
[2025-11-26 10:41:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 10:41:33] 
[2025-11-26 10:41:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 10:41:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 10:41:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 10:41:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 10:41:33] 
[2025-11-26 10:41:33] 2025-11-26 09:40:32,373 | INFO     | ***************************************
[2025-11-26 10:41:33] 2025-11-26 09:40:32,876 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 10:41:33] 2025-11-26 09:40:32,890 | INFO     | sufficient remaining disk space (328679292928 B)
[2025-11-26 10:41:33] 2025-11-26 09:40:32,891 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 10:41:33] 2025-11-26 09:40:32,891 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 10:41:33] 2025-11-26 09:40:32,891 | INFO     | update_server=False
[2025-11-26 10:41:33] 2025-11-26 09:40:32,891 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 10:41:33] 2025-11-26 09:40:32,891 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:41:33] 2025-11-26 09:40:32,891 | INFO     | aborting loop
[2025-11-26 10:41:33] 2025-11-26 09:40:32,891 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:41:33] 2025-11-26 09:40:33,180 | INFO     | all payload control threads have been joined
[2025-11-26 10:41:33] 2025-11-26 09:40:33,432 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 10:41:33] 2025-11-26 09:40:33,469 | INFO     | all job control threads have been joined
[2025-11-26 10:41:33] 2025-11-26 09:40:33,843 | INFO     | all data control threads have been joined
[2025-11-26 10:41:33] 2025-11-26 09:40:33,894 | INFO     | [job] queue monitor thread has finished
[2025-11-26 10:41:33] 2025-11-26 09:40:33,896 | INFO     | [job] retrieve thread has finished
[2025-11-26 10:41:33] 2025-11-26 09:40:33,896 | INFO     | [job] job monitor thread has finished
[2025-11-26 10:41:33] 2025-11-26 09:40:34,095 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 10:41:33] 2025-11-26 09:40:34,185 | INFO     | [payload] control thread has finished
[2025-11-26 10:41:33] 2025-11-26 09:40:34,221 | INFO     | [data] copytool_in thread has finished
[2025-11-26 10:41:33] 2025-11-26 09:40:34,226 | INFO     | [job] validate thread has finished
[2025-11-26 10:41:33] 2025-11-26 09:40:34,226 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 10:41:33] 2025-11-26 09:40:34,467 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 10:41:33] 2025-11-26 09:40:34,474 | INFO     | [job] control thread has finished
[2025-11-26 10:41:33] 2025-11-26 09:40:34,547 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 10:41:33] 2025-11-26 09:40:34,727 | INFO     | [payload] validate_post thread has finished
[2025-11-26 10:41:33] 2025-11-26 09:40:34,849 | INFO     | [data] control thread has finished
[2025-11-26 10:41:33] 2025-11-26 09:40:35,194 | INFO     | [payload] failed_post thread has finished
[2025-11-26 10:41:33] 2025-11-26 09:40:35,438 | INFO     | [data] copytool_out thread has finished
[2025-11-26 10:41:33] 2025-11-26 09:40:36,002 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 10:41:33] 2025-11-26 09:40:40,009 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 10:41:33] 2025-11-26 09:41:03,810 | INFO     | PID=2843658 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 10:41:33] 2025-11-26 09:41:03,810 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 10:41:33] 2025-11-26 09:41:03,810 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 10:41:33] 2025-11-26 09:41:03,810 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 10:41:33] 2025-11-26 09:41:26,800 | INFO     | [monitor] cgroup control has ended
[2025-11-26 10:41:33] 2025-11-26 09:41:28,241 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140252970436416)>', '<ExcThread(monitor, started 140252324804352)>']
[2025-11-26 10:41:33] 2025-11-26 09:41:28,938 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 10:41:33] 2025-11-26 09:41:28,938 | INFO     | [monitor] control thread has ended
[2025-11-26 10:41:33] 2025-11-26 09:41:33,266 | INFO     | all workflow threads have been joined
[2025-11-26 10:41:33] 2025-11-26 09:41:33,267 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 10:41:33] 2025-11-26 09:41:33,267 | INFO     | traces error code: 0
[2025-11-26 10:41:33] 2025-11-26 09:41:33,267 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 10:41:33] 2025-11-26 09:41:33,322 [wrapper] ==== pilot stdout END ====
[2025-11-26 10:41:33] 2025-11-26 09:41:33,324 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 10:41:33] 2025-11-26 09:41:33,327 [wrapper] pilotpid: 2843658
[2025-11-26 10:41:33] 2025-11-26 09:41:33,330 [wrapper] Pilot exit status: 0
[2025-11-26 10:41:33] 2025-11-26 09:41:33,337 [wrapper] pandaids: 6895334571
[2025-11-26 10:41:33] 2025-11-26 09:41:33,357 [wrapper] cleanup supervisor_pilot 2888437 2843659
[2025-11-26 10:41:33] 2025-11-26 09:41:33,360 [wrapper] Test setup, not cleaning
[2025-11-26 10:41:33] 2025-11-26 09:41:33,362 [wrapper] apfmon messages muted
[2025-11-26 10:41:33] 2025-11-26 09:41:33,365 [wrapper] ==== wrapper stdout END ====
[2025-11-26 10:41:33] 2025-11-26 09:41:33,368 [wrapper] ==== wrapper stderr END ====
[2025-11-26 10:41:33]  *** Error codes and diagnostics ***
[2025-11-26 10:41:33]     "exeErrorCode": 0,
[2025-11-26 10:41:33]     "exeErrorDiag": "",
[2025-11-26 10:41:33]     "pilotErrorCode": 0,
[2025-11-26 10:41:33]     "pilotErrorDiag": "",
[2025-11-26 10:41:33]  *** Listing of results directory ***
[2025-11-26 10:41:33] total 1314148
[2025-11-26 10:41:33] -rw-r--r-- 1 boinc boinc    576529 Nov 22 04:55 pilot3.tar.gz
[2025-11-26 10:41:33] -rw-r--r-- 1 boinc boinc      5112 Nov 22 04:57 queuedata.json
[2025-11-26 10:41:33] -rwx------ 1 boinc boinc     36292 Nov 22 04:58 runpilot2-wrapper.sh
[2025-11-26 10:41:33] -rw-r--r-- 1 boinc boinc       100 Nov 26 04:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 10:41:33] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 04:41 run_atlas
[2025-11-26 10:41:33] -rw-r--r-- 1 boinc boinc       105 Nov 26 04:41 job.xml
[2025-11-26 10:41:33] -rw-r--r-- 2 boinc boinc 409181035 Nov 26 04:41 EVNT.47483658._000243.pool.root.1
[2025-11-26 10:41:33] drwxrwx--x 2 boinc boinc      4096 Nov 26 04:41 shared
[2025-11-26 10:41:33] -rw-r--r-- 2 boinc boinc    590101 Nov 26 04:41 input.tar.gz
[2025-11-26 10:41:33] -rw-r--r-- 2 boinc boinc     15847 Nov 26 04:41 start_atlas.sh
[2025-11-26 10:41:33] -rw-r--r-- 1 boinc boinc         0 Nov 26 04:41 boinc_setup_complete
[2025-11-26 10:41:33] -rw-r--r-- 1 boinc boinc      6444 Nov 26 04:41 init_data.xml
[2025-11-26 10:41:33] -rw-r--r-- 1 boinc boinc         0 Nov 26 04:41 boinc_lockfile
[2025-11-26 10:41:33] -rw-r--r-- 1 boinc boinc      2785 Nov 26 04:41 pandaJob.out
[2025-11-26 10:41:33] -rw------- 1 boinc boinc    991877 Nov 26 04:41 agis_schedconf.cvmfs.json
[2025-11-26 10:41:33] drwx------ 5 boinc boinc      4096 Nov 26 04:41 pilot3
[2025-11-26 10:41:33] -rw-r--r-- 1 boinc boinc       531 Nov 26 10:36 boinc_task_state.xml
[2025-11-26 10:41:33] -rw------- 1 boinc boinc 924101108 Nov 26 10:40 HITS.47556137._002396.pool.root.1
[2025-11-26 10:41:33] -rw------- 1 boinc boinc      1025 Nov 26 10:40 memory_monitor_summary.json
[2025-11-26 10:41:33] -rw------- 1 boinc boinc   1516240 Nov 26 10:40 agis_ddmendpoints.agis.ALL.json
[2025-11-26 10:41:33] -rw------- 1 boinc boinc   1208397 Nov 26 10:40 log.47556137._002396.job.log.tgz.1
[2025-11-26 10:41:33] -rw------- 1 boinc boinc      8564 Nov 26 10:40 heartbeat.json
[2025-11-26 10:41:33] -rw------- 1 boinc boinc        95 Nov 26 10:41 pilot_heartbeat.json
[2025-11-26 10:41:33] -rw-r--r-- 1 boinc boinc      8192 Nov 26 10:41 boinc_mmap_file
[2025-11-26 10:41:33] -rw-r--r-- 1 boinc boinc        28 Nov 26 10:41 wrapper_checkpoint.txt
[2025-11-26 10:41:33] -rw------- 1 boinc boinc      4752 Nov 26 10:41 pilotlog.txt
[2025-11-26 10:41:33] -rw------- 1 boinc boinc   3038747 Nov 26 10:41 log.47556137._002396.job.log.1
[2025-11-26 10:41:33] -rw------- 1 boinc boinc       353 Nov 26 10:41 output.list
[2025-11-26 10:41:33] -rw-r--r-- 1 boinc boinc       620 Nov 26 10:41 runtime_log
[2025-11-26 10:41:33] -rw------- 1 boinc boinc   4270080 Nov 26 10:41 result.tar.gz
[2025-11-26 10:41:33] -rw-r--r-- 1 boinc boinc      8903 Nov 26 10:41 runtime_log.err
[2025-11-26 10:41:33] -rw------- 1 boinc boinc       666 Nov 26 10:41 TwmLDm8wtg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9uJKDmbLHmYm.diag
[2025-11-26 10:41:33] -rw-r--r-- 1 boinc boinc     11844 Nov 26 10:41 stderr.txt
[2025-11-26 10:41:33] HITS file was successfully produced:
[2025-11-26 10:41:33] -rw------- 1 boinc boinc 924101108 Nov 26 10:40 shared/HITS.pool.root.1
[2025-11-26 10:41:33]  *** Contents of shared directory: ***
[2025-11-26 10:41:33] total 1306812
[2025-11-26 10:41:33] -rw-r--r-- 2 boinc boinc 409181035 Nov 26 04:41 ATLAS.root_0
[2025-11-26 10:41:33] -rw-r--r-- 2 boinc boinc    590101 Nov 26 04:41 input.tar.gz
[2025-11-26 10:41:33] -rw-r--r-- 2 boinc boinc     15847 Nov 26 04:41 start_atlas.sh
[2025-11-26 10:41:33] -rw------- 1 boinc boinc 924101108 Nov 26 10:40 HITS.pool.root.1
[2025-11-26 10:41:33] -rw------- 1 boinc boinc   4270080 Nov 26 10:41 result.tar.gz
10:41:34 (2839856): run_atlas exited; CPU time 83969.320163
10:41:34 (2839856): called boinc_finish(0)

</stderr_txt>
]]>

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