Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:29:41 (4690): wrapper (7.7.26015): starting
01:29:41 (4690): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 01:29:42] Arguments: --nthreads 8
[2025-11-26 01:29:42] Threads: 8
[2025-11-26 01:29:42] Checking for CVMFS
[2025-11-26 01:29:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 01:29:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 01:29:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 01:29:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 01:29:42] 2.11.2.0 13026 284616 137496 153303 2 284 14258719 25165824 2057 130560 10 138568798 99.881 80000638 3119 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 01:29:42] CVMFS is ok
[2025-11-26 01:29:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 01:29:42] Checking for apptainer binary...
[2025-11-26 01:29:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 01:29:42] Running /usr/bin/apptainer --version
[2025-11-26 01:29:42] apptainer version 1.3.2-1.el7
[2025-11-26 01:29:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 01:29:44] cg-vwn329.simple-grid.lan
[2025-11-26 01:29:44] apptainer works
[2025-11-26 01:29:44] Set ATHENA_PROC_NUMBER=8
[2025-11-26 01:29:44] Set ATHENA_CORE_NUMBER=8
[2025-11-26 01:29:44] Starting ATLAS job with PandaID=6895335438
[2025-11-26 01:29:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 01:24:00]  *** The last 200 lines of the pilot log: ***
[2025-11-27 01:24:00] 2025-11-27 00:23:13,002 | INFO     | time since job start (85986s) is within the limit (172800.0s)
[2025-11-27 01:24:00] 2025-11-27 00:23:14,693 | INFO     | monitor loop #5722: job 0:6895335438 is in state 'finished'
[2025-11-27 01:24:00] 2025-11-27 00:23:14,693 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:24:00] 2025-11-27 00:23:15,010 | INFO     | time since job start (85988s) is within the limit (172800.0s)
[2025-11-27 01:24:00] 2025-11-27 00:23:17,019 | INFO     | time since job start (85990s) is within the limit (172800.0s)
[2025-11-27 01:24:00] 2025-11-27 00:23:17,203 | INFO     | monitor loop #5723: job 0:6895335438 is in state 'finished'
[2025-11-27 01:24:00] 2025-11-27 00:23:17,203 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:24:00] 2025-11-27 00:23:19,026 | INFO     | time since job start (85992s) is within the limit (172800.0s)
[2025-11-27 01:24:00] 2025-11-27 00:23:19,713 | INFO     | monitor loop #5724: job 0:6895335438 is in state 'finished'
[2025-11-27 01:24:00] 2025-11-27 00:23:19,713 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:24:00] 2025-11-27 00:23:20,187 | INFO     | PID=8549 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 01:24:00] 2025-11-27 00:23:20,187 | INFO     | .. there are 9 such processes running
[2025-11-27 01:24:00] 2025-11-27 00:23:21,191 | INFO     | time since job start (85994s) is within the limit (172800.0s)
[2025-11-27 01:24:00] 2025-11-27 00:23:22,229 | INFO     | monitor loop #5725: job 0:6895335438 is in state 'finished'
[2025-11-27 01:24:00] 2025-11-27 00:23:22,229 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:24:00] 2025-11-27 00:23:23,197 | INFO     | time since job start (85996s) is within the limit (172800.0s)
[2025-11-27 01:24:00] 2025-11-27 00:23:23,523 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 01:24:00] 2025-11-27 00:23:23,524 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 01:24:00] 2025-11-27 00:23:23,526 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6895335438/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 01:24:00] 2025-11-27 00:23:23,527 | INFO     | extracted standard info from prmon json
[2025-11-27 01:24:00] 2025-11-27 00:23:23,527 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 01:24:00] 2025-11-27 00:23:23,527 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 01:24:00] 2025-11-27 00:23:23,567 | INFO     | fitting pss+swap vs Time
[2025-11-27 01:24:00] 2025-11-27 00:23:23,569 | INFO     | sum of square deviations: 865535713666.1108
[2025-11-27 01:24:00] 2025-11-27 00:23:23,665 | INFO     | sum of deviations: 1567469200483.7007
[2025-11-27 01:24:00] 2025-11-27 00:23:23,666 | INFO     | mean x: 1764159972.5838068
[2025-11-27 01:24:00] 2025-11-27 00:23:23,666 | INFO     | mean y: 2846383.1974431816
[2025-11-27 01:24:00] 2025-11-27 00:23:23,666 | INFO     | intersect: -3192014762.437521
[2025-11-27 01:24:00] 2025-11-27 00:23:23,667 | INFO     | chi2: 19.757026375631007
[2025-11-27 01:24:00] 2025-11-27 00:23:23,669 | INFO     | sum of square deviations: 856347951000.2124
[2025-11-27 01:24:00] 2025-11-27 00:23:23,766 | INFO     | sum of deviations: 2039942388249.424
[2025-11-27 01:24:00] 2025-11-27 00:23:23,766 | INFO     | mean x: 1764159820.0876694
[2025-11-27 01:24:00] 2025-11-27 00:23:23,766 | INFO     | mean y: 2854224.3948681396
[2025-11-27 01:24:00] 2025-11-27 00:23:23,766 | INFO     | intersect: -4199624910.9144917
[2025-11-27 01:24:00] 2025-11-27 00:23:23,768 | INFO     | chi2: 16.372905860821447
[2025-11-27 01:24:00] 2025-11-27 00:23:23,768 | INFO     | current chi2=16.372905860821447 (change=17.12869361243375 %)
[2025-11-27 01:24:00] 2025-11-27 00:23:23,768 | INFO     | right removable region: 1402
[2025-11-27 01:24:00] 2025-11-27 00:23:23,770 | INFO     | sum of square deviations: 856347020140.2128
[2025-11-27 01:24:00] 2025-11-27 00:23:23,879 | INFO     | sum of deviations: 1113939841412.3372
[2025-11-27 01:24:00] 2025-11-27 00:23:23,891 | INFO     | mean x: 1764160125.0876694
[2025-11-27 01:24:00] 2025-11-27 00:23:23,891 | INFO     | mean y: 2853907.0541696367
[2025-11-27 01:24:00] 2025-11-27 00:23:23,891 | INFO     | intersect: -2291973077.506789
[2025-11-27 01:24:00] 2025-11-27 00:23:23,893 | INFO     | chi2: 17.02908094138129
[2025-11-27 01:24:00] 2025-11-27 00:23:23,893 | INFO     | current chi2=17.02908094138129 (change=13.807469719301771 %)
[2025-11-27 01:24:00] 2025-11-27 00:23:23,893 | INFO     | left removable region: 10
[2025-11-27 01:24:00] 2025-11-27 00:23:23,895 | INFO     | sum of square deviations: 836362900166.2299
[2025-11-27 01:24:00] 2025-11-27 00:23:23,970 | INFO     | sum of deviations: 1598314119203.2058
[2025-11-27 01:24:00] 2025-11-27 00:23:23,970 | INFO     | mean x: 1764160094.591954
[2025-11-27 01:24:00] 2025-11-27 00:23:23,971 | INFO     | mean y: 2865339.3929597703
[2025-11-27 01:24:00] 2025-11-27 00:23:23,972 | INFO     | intersect: -3368496526.5635076
[2025-11-27 01:24:00] 2025-11-27 00:23:23,973 | INFO     | chi2: 12.653543944793594
[2025-11-27 01:24:00] 2025-11-27 00:23:23,974 | INFO     | current memory leak: 1.91 B/s (using 1392 data points, chi2=12.65)
[2025-11-27 01:24:00] 2025-11-27 00:23:23,975 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-27 01:24:00] 2025-11-27 00:23:23,975 | INFO     | ..............................
[2025-11-27 01:24:00] 2025-11-27 00:23:23,975 | INFO     | . Timing measurements:
[2025-11-27 01:24:00] 2025-11-27 00:23:23,976 | INFO     | . get job = 0 s
[2025-11-27 01:24:00] 2025-11-27 00:23:23,976 | INFO     | . initial setup = 2 s
[2025-11-27 01:24:00] 2025-11-27 00:23:23,976 | INFO     | . payload setup = 11 s
[2025-11-27 01:24:00] 2025-11-27 00:23:23,976 | INFO     | . stage-in = 0 s
[2025-11-27 01:24:00] 2025-11-27 00:23:23,976 | INFO     | . payload execution = 85857 s
[2025-11-27 01:24:00] 2025-11-27 00:23:23,976 | INFO     | . stage-out = 4 s
[2025-11-27 01:24:00] 2025-11-27 00:23:23,976 | INFO     | . log creation = 1 s
[2025-11-27 01:24:00] 2025-11-27 00:23:23,976 | INFO     | ..............................
[2025-11-27 01:24:00] 2025-11-27 00:23:24,107 | INFO     | 
[2025-11-27 01:24:00] 2025-11-27 00:23:24,107 | INFO     | job summary report
[2025-11-27 01:24:00] 2025-11-27 00:23:24,107 | INFO     | --------------------------------------------------
[2025-11-27 01:24:00] 2025-11-27 00:23:24,107 | INFO     | PanDA job id: 6895335438
[2025-11-27 01:24:00] 2025-11-27 00:23:24,107 | INFO     | task id: 47556137
[2025-11-27 01:24:00] 2025-11-27 00:23:24,107 | INFO     | errors: (none)
[2025-11-27 01:24:00] 2025-11-27 00:23:24,107 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 01:24:00] 2025-11-27 00:23:24,107 | INFO     | pilot state: finished 
[2025-11-27 01:24:00] 2025-11-27 00:23:24,107 | INFO     | transexitcode: 0
[2025-11-27 01:24:00] 2025-11-27 00:23:24,108 | INFO     | exeerrorcode: 0
[2025-11-27 01:24:00] 2025-11-27 00:23:24,108 | INFO     | exeerrordiag: 
[2025-11-27 01:24:00] 2025-11-27 00:23:24,108 | INFO     | exitcode: 0
[2025-11-27 01:24:00] 2025-11-27 00:23:24,108 | INFO     | exitmsg: OK
[2025-11-27 01:24:00] 2025-11-27 00:23:24,108 | INFO     | cpuconsumptiontime: 325392 s
[2025-11-27 01:24:00] 2025-11-27 00:23:24,108 | INFO     | nevents: 1000
[2025-11-27 01:24:00] 2025-11-27 00:23:24,108 | INFO     | neventsw: 0
[2025-11-27 01:24:00] 2025-11-27 00:23:24,108 | INFO     | pid: 15142
[2025-11-27 01:24:00] 2025-11-27 00:23:24,108 | INFO     | pgrp: 15142
[2025-11-27 01:24:00] 2025-11-27 00:23:24,108 | INFO     | corecount: 8
[2025-11-27 01:24:00] 2025-11-27 00:23:24,109 | INFO     | event service: False
[2025-11-27 01:24:00] 2025-11-27 00:23:24,109 | INFO     | sizes: {0: 2284315, 1: 2284315, 9: 2284605, 12: 2284633, 85873: 2345701, 85878: 2354879, 85976: 2355069}
[2025-11-27 01:24:00] 2025-11-27 00:23:24,109 | INFO     | --------------------------------------------------
[2025-11-27 01:24:00] 2025-11-27 00:23:24,109 | INFO     | 
[2025-11-27 01:24:00] 2025-11-27 00:23:24,109 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-11-27 01:24:00] 2025-11-27 00:23:24,723 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 01:24:00] 2025-11-27 00:23:24,723 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 01:24:00] 2025-11-27 00:23:24,723 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 01:24:00] 2025-11-27 00:23:24,724 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 01:24:00] 2025-11-27 00:23:24,724 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 01:24:00] 2025-11-27 00:23:24,724 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 01:24:00] 2025-11-27 00:23:24,724 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 01:24:00] 2025-11-27 00:23:24,724 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 01:24:00] 2025-11-27 00:23:24,724 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 01:24:00] 2025-11-27 00:23:24,724 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 01:24:00] 2025-11-27 00:23:24,724 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 01:24:00] 2025-11-27 00:23:24,724 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 01:24:00] 2025-11-27 00:23:24,724 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 01:24:00] 2025-11-27 00:23:24,724 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 01:24:00] 2025-11-27 00:23:24,725 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 01:24:00] 2025-11-27 00:23:24,725 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 01:24:00] 2025-11-27 00:23:24,725 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 01:24:00] 2025-11-27 00:23:24,725 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 01:24:00] 2025-11-27 00:23:24,725 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 01:24:00] 2025-11-27 00:23:24,725 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 01:24:00] 2025-11-27 00:23:24,725 | INFO     | job 6895335438 has completed (purged errors)
[2025-11-27 01:24:00] 2025-11-27 00:23:24,725 | INFO     | overall cleanup function is called
[2025-11-27 01:24:00] 2025-11-27 00:23:25,760 | INFO     | --- collectZombieJob: --- 10, [15142]
[2025-11-27 01:24:00] 2025-11-27 00:23:25,760 | INFO     | zombie collector waiting for pid 15142
[2025-11-27 01:24:00] 2025-11-27 00:23:25,760 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 01:24:00] 2025-11-27 00:23:25,760 | INFO     | collected zombie processes
[2025-11-27 01:24:00] 2025-11-27 00:23:25,760 | INFO     | will attempt to kill all subprocesses of pid=15142
[2025-11-27 01:24:00] 2025-11-27 00:23:25,856 | INFO     | process IDs to be killed: [15142] (in reverse order)
[2025-11-27 01:24:00] 2025-11-27 00:23:26,747 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 01:24:00] 2025-11-27 00:23:26,748 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 01:24:00] 2025-11-27 00:23:26,751 | INFO     | did not find any defunct processes belonging to 15142
[2025-11-27 01:24:00] 2025-11-27 00:23:26,753 | INFO     | did not find any defunct processes belonging to 15142
[2025-11-27 01:24:00] 2025-11-27 00:23:26,765 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 01:24:00] 2025-11-27 00:23:26,766 | INFO     | ready for new job
[2025-11-27 01:24:00] 2025-11-27 00:23:26,766 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 01:24:00] 2025-11-27 00:23:26,771 | INFO     | ***************************************
[2025-11-27 01:24:00] 2025-11-27 00:23:26,771 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 01:24:00] 2025-11-27 00:23:26,771 | INFO     | ***************************************
[2025-11-27 01:24:00] 2025-11-27 00:23:26,771 | INFO     | 
[2025-11-27 01:24:00] 2025-11-27 00:23:26,772 | INFO     | pilot is running in a VM
[2025-11-27 01:24:00] 2025-11-27 00:23:26,772 | INFO     | architecture information:
[2025-11-27 01:24:00] 2025-11-27 00:23:26,772 | INFO     | executing command: cat /etc/os-release
[2025-11-27 01:24:00] 2025-11-27 00:23:27,104 | INFO     | cat /etc/os-release:
[2025-11-27 01:24:00] NAME="CentOS Linux"
[2025-11-27 01:24:00] VERSION="7 (Core)"
[2025-11-27 01:24:00] ID="centos"
[2025-11-27 01:24:00] ID_LIKE="rhel fedora"
[2025-11-27 01:24:00] VERSION_ID="7"
[2025-11-27 01:24:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 01:24:00] ANSI_COLOR="0;31"
[2025-11-27 01:24:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 01:24:00] HOME_URL="https://www.centos.org/"
[2025-11-27 01:24:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 01:24:00] 
[2025-11-27 01:24:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 01:24:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 01:24:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 01:24:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 01:24:00] 
[2025-11-27 01:24:00] 2025-11-27 00:23:27,104 | INFO     | ***************************************
[2025-11-27 01:24:00] 2025-11-27 00:23:27,608 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-11-27 01:24:00] 2025-11-27 00:23:27,821 | INFO     | sufficient remaining disk space (495752052736 B)
[2025-11-27 01:24:00] 2025-11-27 00:23:27,822 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 01:24:00] 2025-11-27 00:23:27,822 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 01:24:00] 2025-11-27 00:23:27,822 | INFO     | update_server=False
[2025-11-27 01:24:00] 2025-11-27 00:23:27,822 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 01:24:00] 2025-11-27 00:23:27,823 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 01:24:00] 2025-11-27 00:23:27,828 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 01:24:00] 2025-11-27 00:23:28,253 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:24:00] 2025-11-27 00:23:28,253 | INFO     | aborting loop
[2025-11-27 01:24:00] 2025-11-27 00:23:28,829 | INFO     | [job] retrieve thread has finished
[2025-11-27 01:24:00] 2025-11-27 00:23:28,892 | INFO     | all data control threads have been joined
[2025-11-27 01:24:00] 2025-11-27 00:23:28,948 | INFO     | [payload] validate_post thread has finished
[2025-11-27 01:24:00] 2025-11-27 00:23:29,023 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 01:24:00] 2025-11-27 00:23:29,035 | INFO     | [data] copytool_in thread has finished
[2025-11-27 01:24:00] 2025-11-27 00:23:29,126 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:24:00] 2025-11-27 00:23:29,136 | INFO     | [job] validate thread has finished
[2025-11-27 01:24:00] 2025-11-27 00:23:29,163 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 01:24:00] 2025-11-27 00:23:29,225 | INFO     | all payload control threads have been joined
[2025-11-27 01:24:00] 2025-11-27 00:23:29,259 | INFO     | [job] job monitor thread has finished
[2025-11-27 01:24:00] 2025-11-27 00:23:29,484 | INFO     | all job control threads have been joined
[2025-11-27 01:24:00] 2025-11-27 00:23:29,526 | INFO     | [payload] failed_post thread has finished
[2025-11-27 01:24:00] 2025-11-27 00:23:29,746 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 01:24:00] 2025-11-27 00:23:29,833 | INFO     | [data] copytool_out thread has finished
[2025-11-27 01:24:00] 2025-11-27 00:23:29,899 | INFO     | [data] control thread has finished
[2025-11-27 01:24:00] 2025-11-27 00:23:29,970 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 01:24:00] 2025-11-27 00:23:30,132 | INFO     | [job] queue monitor thread has finished
[2025-11-27 01:24:00] 2025-11-27 00:23:30,232 | INFO     | [payload] control thread has finished
[2025-11-27 01:24:00] 2025-11-27 00:23:30,491 | INFO     | [job] control thread has finished
[2025-11-27 01:24:00] 2025-11-27 00:23:31,837 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 01:24:00] 2025-11-27 00:23:37,469 | INFO     | [monitor] cgroup control has ended
[2025-11-27 01:24:00] 2025-11-27 00:23:37,795 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140089171257152)>', '<ExcThread(monitor, started 140088570783488)>']
[2025-11-27 01:24:00] 2025-11-27 00:23:42,821 | INFO     | all workflow threads have been joined
[2025-11-27 01:24:00] 2025-11-27 00:23:42,821 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 01:24:00] 2025-11-27 00:23:42,821 | INFO     | traces error code: 0
[2025-11-27 01:24:00] 2025-11-27 00:23:42,821 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 01:24:00] 2025-11-27 00:23:56,370 | INFO     | PID=8549 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 01:24:00] 2025-11-27 00:23:56,370 | INFO     | .. there are 9 such processes running
[2025-11-27 01:24:00] 2025-11-27 00:23:56,371 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 01:24:00] 2025-11-27 00:23:56,372 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 01:24:00] 2025-11-27 00:23:56,372 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 01:24:00] 2025-11-27 00:23:56,372 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 01:24:00] 2025-11-27 00:23:56,372 | INFO     | [monitor] control thread has ended
[2025-11-27 01:24:00] 2025-11-27 00:23:56,694 [wrapper] ==== pilot stdout END ====
[2025-11-27 01:24:00] 2025-11-27 00:23:56,788 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 01:24:00] 2025-11-27 00:23:56,838 [wrapper] pilotpid: 8549
[2025-11-27 01:24:00] 2025-11-27 00:23:56,912 [wrapper] Pilot exit status: 0
[2025-11-27 01:24:00] 2025-11-27 00:23:57,205 [wrapper] pandaids: 6895335438
[2025-11-27 01:24:00] 2025-11-27 00:23:58,182 [wrapper] cleanup supervisor_pilot   844 8550
[2025-11-27 01:24:00] 2025-11-27 00:23:58,255 [wrapper] Test setup, not cleaning
[2025-11-27 01:24:00] 2025-11-27 00:23:58,306 [wrapper] apfmon messages muted
[2025-11-27 01:24:00] 2025-11-27 00:23:58,397 [wrapper] ==== wrapper stdout END ====
[2025-11-27 01:24:00] 2025-11-27 00:23:58,453 [wrapper] ==== wrapper stderr END ====
[2025-11-27 01:24:00]  *** Error codes and diagnostics ***
[2025-11-27 01:24:00]     "exeErrorCode": 0,
[2025-11-27 01:24:00]     "exeErrorDiag": "",
[2025-11-27 01:24:00]     "pilotErrorCode": 0,
[2025-11-27 01:24:00]     "pilotErrorDiag": "",
[2025-11-27 01:24:00]  *** Listing of results directory ***
[2025-11-27 01:24:00] total 1322452
[2025-11-27 01:24:00] -rw-r--r--. 1 boinc boinc    576529 Nov 22 05:34 pilot3.tar.gz
[2025-11-27 01:24:00] -rwx------. 1 boinc boinc     36292 Nov 22 05:44 runpilot2-wrapper.sh
[2025-11-27 01:24:00] -rw-r--r--. 1 boinc boinc      5112 Nov 22 05:44 queuedata.json
[2025-11-27 01:24:00] -rw-r--r--. 1 boinc boinc       100 Nov 26 01:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 01:24:00] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 01:29 run_atlas
[2025-11-27 01:24:00] -rw-r--r--. 1 boinc boinc       105 Nov 26 01:29 job.xml
[2025-11-27 01:24:00] -rw-r--r--. 2 boinc boinc 409211244 Nov 26 01:29 EVNT.47483658._000256.pool.root.1
[2025-11-27 01:24:00] -rw-r--r--. 2 boinc boinc     15847 Nov 26 01:29 start_atlas.sh
[2025-11-27 01:24:00] drwxrwx--x. 2 boinc boinc        68 Nov 26 01:29 shared
[2025-11-27 01:24:00] -rw-r--r--. 2 boinc boinc    590095 Nov 26 01:29 input.tar.gz
[2025-11-27 01:24:00] -rw-r--r--. 1 boinc boinc      6391 Nov 26 01:29 init_data.xml
[2025-11-27 01:24:00] -rw-r--r--. 1 boinc boinc         0 Nov 26 01:29 boinc_lockfile
[2025-11-27 01:24:00] -rw-r--r--. 1 boinc boinc      2786 Nov 26 01:29 pandaJob.out
[2025-11-27 01:24:00] -rw-------. 1 boinc boinc    991877 Nov 26 01:30 agis_schedconf.cvmfs.json
[2025-11-27 01:24:00] drwx------. 5 boinc boinc      4096 Nov 26 01:30 pilot3
[2025-11-27 01:24:00] -rw-r--r--. 1 boinc boinc       533 Nov 27 00:50 boinc_task_state.xml
[2025-11-27 01:24:00] -rw-------. 1 boinc boinc 913285505 Nov 27 01:20 HITS.47556137._002522.pool.root.1
[2025-11-27 01:24:00] -rw-------. 1 boinc boinc      1030 Nov 27 01:21 memory_monitor_summary.json
[2025-11-27 01:24:00] -rw-------. 1 boinc boinc   1516240 Nov 27 01:21 agis_ddmendpoints.agis.ALL.json
[2025-11-27 01:24:00] -rw-------. 1 boinc boinc   2464529 Nov 27 01:21 log.47556137._002522.job.log.tgz.1
[2025-11-27 01:24:00] -rw-------. 1 boinc boinc      8618 Nov 27 01:23 heartbeat.json
[2025-11-27 01:24:00] -rw-r--r--. 1 boinc boinc        29 Nov 27 01:23 wrapper_checkpoint.txt
[2025-11-27 01:24:00] -rw-r--r--. 1 boinc boinc      8192 Nov 27 01:23 boinc_mmap_file
[2025-11-27 01:24:00] -rw-------. 1 boinc boinc        95 Nov 27 01:23 pilot_heartbeat.json
[2025-11-27 01:24:00] -rw-------. 1 boinc boinc       819 Nov 27 01:23 pilotlog.txt
[2025-11-27 01:24:00] -rw-------. 1 boinc boinc  11429355 Nov 27 01:23 log.47556137._002522.job.log.1
[2025-11-27 01:24:00] -rw-------. 1 boinc boinc       353 Nov 27 01:24 output.list
[2025-11-27 01:24:00] -rw-r--r--. 1 boinc boinc       620 Nov 27 01:24 runtime_log
[2025-11-27 01:24:00] -rw-------. 1 boinc boinc  13916160 Nov 27 01:24 result.tar.gz
[2025-11-27 01:24:00] -rw-r--r--. 1 boinc boinc      8817 Nov 27 01:24 runtime_log.err
[2025-11-27 01:24:00] -rw-------. 1 boinc boinc       662 Nov 27 01:24 0cpKDmoeug8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmrwJKDmjCazFn.diag
[2025-11-27 01:24:00] -rw-r--r--. 1 boinc boinc     21446 Nov 27 01:24 stderr.txt
[2025-11-27 01:24:00] HITS file was successfully produced:
[2025-11-27 01:24:00] -rw-------. 1 boinc boinc 913285505 Nov 27 01:20 shared/HITS.pool.root.1
[2025-11-27 01:24:00]  *** Contents of shared directory: ***
[2025-11-27 01:24:00] total 1305696
[2025-11-27 01:24:00] -rw-r--r--. 2 boinc boinc 409211244 Nov 26 01:29 ATLAS.root_0
[2025-11-27 01:24:00] -rw-r--r--. 2 boinc boinc     15847 Nov 26 01:29 start_atlas.sh
[2025-11-27 01:24:00] -rw-r--r--. 2 boinc boinc    590095 Nov 26 01:29 input.tar.gz
[2025-11-27 01:24:00] -rw-------. 1 boinc boinc 913285505 Nov 27 01:20 HITS.pool.root.1
[2025-11-27 01:24:00] -rw-------. 1 boinc boinc  13916160 Nov 27 01:24 result.tar.gz
01:24:02 (4690): run_atlas exited; CPU time 325996.097399
01:24:02 (4690): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN