Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:25:44 (7317): wrapper (7.7.26015): starting
09:25:44 (7317): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 09:25:44] Arguments: --nthreads 8
[2025-11-23 09:25:44] Threads: 8
[2025-11-23 09:25:44] Checking for CVMFS
[2025-11-23 09:25:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 09:25:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 09:25:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 09:25:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 09:25:45] 2.11.2.0 3838 138262 135472 153211 1 81 12628107 18432001 1673 130560 0 113794668 99.988 4911857 26986 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 09:25:45] CVMFS is ok
[2025-11-23 09:25:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 09:25:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 09:25:45] Further information can be found at the LHC@home message board.
[2025-11-23 09:25:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 09:25:45] Checking for apptainer binary...
[2025-11-23 09:25:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 09:25:45] Running /usr/bin/apptainer --version
[2025-11-23 09:25:45] apptainer version 1.3.2-1.el7
[2025-11-23 09:25:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 09:25:45] c-206-4.aglt2.org
[2025-11-23 09:25:45] apptainer works
[2025-11-23 09:25:45] Set ATHENA_PROC_NUMBER=8
[2025-11-23 09:25:45] Set ATHENA_CORE_NUMBER=8
[2025-11-23 09:25:45] Starting ATLAS job with PandaID=6895344170
[2025-11-23 09:25:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 04:32:18]  *** The last 200 lines of the pilot log: ***
[2025-11-24 04:32:18] 2025-11-24 09:31:44,577 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 04:32:18] 2025-11-24 09:31:44,582 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2206.0416666666665
[2025-11-24 04:32:18] 2025-11-24 09:31:44,585 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895344170/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 04:32:18] 2025-11-24 09:31:44,586 | INFO     | extracted standard info from prmon json
[2025-11-24 04:32:18] 2025-11-24 09:31:44,586 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 04:32:18] 2025-11-24 09:31:44,586 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 04:32:18] 2025-11-24 09:31:44,602 | INFO     | fitting pss+swap vs Time
[2025-11-24 04:32:18] 2025-11-24 09:31:44,603 | INFO     | sum of square deviations: 443863054140.32025
[2025-11-24 04:32:18] 2025-11-24 09:31:44,630 | INFO     | sum of deviations: 2213517185622.081
[2025-11-24 04:32:18] 2025-11-24 09:31:44,630 | INFO     | mean x: 1763942328.60071
[2025-11-24 04:32:18] 2025-11-24 09:31:44,630 | INFO     | mean y: 3303308.9068322983
[2025-11-24 04:32:18] 2025-11-24 09:31:44,630 | INFO     | intersect: -8793366344.903896
[2025-11-24 04:32:18] 2025-11-24 09:31:44,631 | INFO     | chi2: 5.395122897469035
[2025-11-24 04:32:18] 2025-11-24 09:31:44,632 | INFO     | sum of square deviations: 437981745696.00775
[2025-11-24 04:32:18] 2025-11-24 09:31:44,657 | INFO     | sum of deviations: 2631703289109.8066
[2025-11-24 04:32:18] 2025-11-24 09:31:44,657 | INFO     | mean x: 1763942176.1033869
[2025-11-24 04:32:18] 2025-11-24 09:31:44,657 | INFO     | mean y: 3314146.656862745
[2025-11-24 04:32:18] 2025-11-24 09:31:44,657 | INFO     | intersect: -10595694766.999575
[2025-11-24 04:32:18] 2025-11-24 09:31:44,658 | INFO     | chi2: 2.309692018411677
[2025-11-24 04:32:18] 2025-11-24 09:31:44,658 | INFO     | current chi2=2.309692018411677 (change=57.18926033186006 %)
[2025-11-24 04:32:18] 2025-11-24 09:31:44,659 | INFO     | sum of square deviations: 432152624276.67896
[2025-11-24 04:32:18] 2025-11-24 09:31:44,683 | INFO     | sum of deviations: 2705324903019.7427
[2025-11-24 04:32:18] 2025-11-24 09:31:44,683 | INFO     | mean x: 1763942023.6060877
[2025-11-24 04:32:18] 2025-11-24 09:31:44,683 | INFO     | mean y: 3316068.5675917636
[2025-11-24 04:32:18] 2025-11-24 09:31:44,683 | INFO     | intersect: -11039162944.331717
[2025-11-24 04:32:18] 2025-11-24 09:31:44,684 | INFO     | chi2: 2.087911273217985
[2025-11-24 04:32:18] 2025-11-24 09:31:44,684 | INFO     | current chi2=2.087911273217985 (change=9.602178274236127 %)
[2025-11-24 04:32:18] 2025-11-24 09:31:44,685 | INFO     | right removable region: 1116
[2025-11-24 04:32:18] 2025-11-24 09:31:44,686 | INFO     | sum of square deviations: 437981332726.008
[2025-11-24 04:32:18] 2025-11-24 09:31:44,710 | INFO     | sum of deviations: 1911318426412.8843
[2025-11-24 04:32:18] 2025-11-24 09:31:44,710 | INFO     | mean x: 1763942481.1033869
[2025-11-24 04:32:18] 2025-11-24 09:31:44,710 | INFO     | mean y: 3311132.794117647
[2025-11-24 04:32:18] 2025-11-24 09:31:44,710 | INFO     | intersect: -7694404535.31742
[2025-11-24 04:32:18] 2025-11-24 09:31:44,711 | INFO     | chi2: 3.544070169814708
[2025-11-24 04:32:18] 2025-11-24 09:31:44,711 | INFO     | current chi2=3.544070169814708 (change=34.30974164689917 %)
[2025-11-24 04:32:18] 2025-11-24 09:31:44,712 | INFO     | sum of square deviations: 432151798336.6795
[2025-11-24 04:32:18] 2025-11-24 09:31:44,736 | INFO     | sum of deviations: 1829082154570.067
[2025-11-24 04:32:18] 2025-11-24 09:31:44,737 | INFO     | mean x: 1763942633.6060877
[2025-11-24 04:32:18] 2025-11-24 09:31:44,737 | INFO     | mean y: 3313283.6956132497
[2025-11-24 04:32:18] 2025-11-24 09:31:44,737 | INFO     | intersect: -7462572558.345036
[2025-11-24 04:32:18] 2025-11-24 09:31:44,738 | INFO     | chi2: 3.493935667451142
[2025-11-24 04:32:18] 2025-11-24 09:31:44,738 | INFO     | current chi2=3.493935667451142 (change=1.4146024192909066 %)
[2025-11-24 04:32:18] 2025-11-24 09:31:44,738 | INFO     | left removable region: 20
[2025-11-24 04:32:18] 2025-11-24 09:31:44,739 | INFO     | sum of square deviations: 408233835763.6418
[2025-11-24 04:32:18] 2025-11-24 09:31:44,769 | INFO     | sum of deviations: 2206205826031.041
[2025-11-24 04:32:18] 2025-11-24 09:31:44,769 | INFO     | mean x: 1763942603.1104014
[2025-11-24 04:32:18] 2025-11-24 09:31:44,770 | INFO     | mean y: 3329103.1979927006
[2025-11-24 04:32:18] 2025-11-24 09:31:44,770 | INFO     | intersect: -9529492791.603714
[2025-11-24 04:32:18] 2025-11-24 09:31:44,771 | INFO     | chi2: 0.15130342028345836
[2025-11-24 04:32:18] 2025-11-24 09:31:44,771 | INFO     | current memory leak: 5.40 B/s (using 1096 data points, chi2=0.15)
[2025-11-24 04:32:18] 2025-11-24 09:31:44,772 | INFO     | could have reported an average CPU frequency of 2599 MHz (41 samples)
[2025-11-24 04:32:18] 2025-11-24 09:31:44,772 | INFO     | ..............................
[2025-11-24 04:32:18] 2025-11-24 09:31:44,772 | INFO     | . Timing measurements:
[2025-11-24 04:32:18] 2025-11-24 09:31:44,772 | INFO     | . get job = 0 s
[2025-11-24 04:32:18] 2025-11-24 09:31:44,772 | INFO     | . initial setup = 2 s
[2025-11-24 04:32:18] 2025-11-24 09:31:44,772 | INFO     | . payload setup = 7 s
[2025-11-24 04:32:18] 2025-11-24 09:31:44,772 | INFO     | . stage-in = 0 s
[2025-11-24 04:32:18] 2025-11-24 09:31:44,773 | INFO     | . payload execution = 68706 s
[2025-11-24 04:32:18] 2025-11-24 09:31:44,773 | INFO     | . stage-out = 3 s
[2025-11-24 04:32:18] 2025-11-24 09:31:44,773 | INFO     | . log creation = 0 s
[2025-11-24 04:32:18] 2025-11-24 09:31:44,773 | INFO     | ..............................
[2025-11-24 04:32:18] 2025-11-24 09:31:44,835 | INFO     | time since job start (68746s) is within the limit (172800.0s)
[2025-11-24 04:32:18] 2025-11-24 09:31:45,129 | INFO     | 
[2025-11-24 04:32:18] 2025-11-24 09:31:45,129 | INFO     | job summary report
[2025-11-24 04:32:18] 2025-11-24 09:31:45,129 | INFO     | --------------------------------------------------
[2025-11-24 04:32:18] 2025-11-24 09:31:45,129 | INFO     | PanDA job id: 6895344170
[2025-11-24 04:32:18] 2025-11-24 09:31:45,129 | INFO     | task id: 47556137
[2025-11-24 04:32:18] 2025-11-24 09:31:45,129 | INFO     | errors: (none)
[2025-11-24 04:32:18] 2025-11-24 09:31:45,129 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 04:32:18] 2025-11-24 09:31:45,130 | INFO     | pilot state: finished 
[2025-11-24 04:32:18] 2025-11-24 09:31:45,130 | INFO     | transexitcode: 0
[2025-11-24 04:32:18] 2025-11-24 09:31:45,130 | INFO     | exeerrorcode: 0
[2025-11-24 04:32:18] 2025-11-24 09:31:45,130 | INFO     | exeerrordiag: 
[2025-11-24 04:32:18] 2025-11-24 09:31:45,130 | INFO     | exitcode: 0
[2025-11-24 04:32:18] 2025-11-24 09:31:45,130 | INFO     | exitmsg: OK
[2025-11-24 04:32:18] 2025-11-24 09:31:45,130 | INFO     | cpuconsumptiontime: 530722 s
[2025-11-24 04:32:18] 2025-11-24 09:31:45,130 | INFO     | nevents: 1000
[2025-11-24 04:32:18] 2025-11-24 09:31:45,130 | INFO     | neventsw: 0
[2025-11-24 04:32:18] 2025-11-24 09:31:45,130 | INFO     | pid: 18048
[2025-11-24 04:32:18] 2025-11-24 09:31:45,131 | INFO     | pgrp: 18048
[2025-11-24 04:32:18] 2025-11-24 09:31:45,131 | INFO     | corecount: 8
[2025-11-24 04:32:18] 2025-11-24 09:31:45,131 | INFO     | event service: False
[2025-11-24 04:32:18] 2025-11-24 09:31:45,131 | INFO     | sizes: {0: 2298755, 4: 2299017, 11: 2299045, 68717: 2354991, 68718: 2354990, 68721: 2364040, 68725: 2364224, 68731: 2364566}
[2025-11-24 04:32:18] 2025-11-24 09:31:45,131 | INFO     | --------------------------------------------------
[2025-11-24 04:32:18] 2025-11-24 09:31:45,131 | INFO     | 
[2025-11-24 04:32:18] 2025-11-24 09:31:45,131 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-24 04:32:18] 2025-11-24 09:31:45,149 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 04:32:18] 2025-11-24 09:31:45,149 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 04:32:18] 2025-11-24 09:31:45,149 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 04:32:18] 2025-11-24 09:31:45,149 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 04:32:18] 2025-11-24 09:31:45,149 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 04:32:18] 2025-11-24 09:31:45,149 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 04:32:18] 2025-11-24 09:31:45,150 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 04:32:18] 2025-11-24 09:31:45,150 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 04:32:18] 2025-11-24 09:31:45,150 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 04:32:18] 2025-11-24 09:31:45,150 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 04:32:18] 2025-11-24 09:31:45,150 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 04:32:18] 2025-11-24 09:31:45,150 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 04:32:18] 2025-11-24 09:31:45,150 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 04:32:18] 2025-11-24 09:31:45,150 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 04:32:18] 2025-11-24 09:31:45,150 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 04:32:18] 2025-11-24 09:31:45,151 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 04:32:18] 2025-11-24 09:31:45,151 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 04:32:18] 2025-11-24 09:31:45,151 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 04:32:18] 2025-11-24 09:31:45,151 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 04:32:18] 2025-11-24 09:31:45,151 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 04:32:18] 2025-11-24 09:31:45,151 | INFO     | job 6895344170 has completed (purged errors)
[2025-11-24 04:32:18] 2025-11-24 09:31:45,151 | INFO     | overall cleanup function is called
[2025-11-24 04:32:18] 2025-11-24 09:31:46,164 | INFO     | --- collectZombieJob: --- 10, [18048]
[2025-11-24 04:32:18] 2025-11-24 09:31:46,164 | INFO     | zombie collector waiting for pid 18048
[2025-11-24 04:32:18] 2025-11-24 09:31:46,165 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 04:32:18] 2025-11-24 09:31:46,165 | INFO     | collected zombie processes
[2025-11-24 04:32:18] 2025-11-24 09:31:46,165 | INFO     | will attempt to kill all subprocesses of pid=18048
[2025-11-24 04:32:18] 2025-11-24 09:31:46,276 | INFO     | process IDs to be killed: [18048] (in reverse order)
[2025-11-24 04:32:18] 2025-11-24 09:31:46,322 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 04:32:18] 2025-11-24 09:31:46,322 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 04:32:18] 2025-11-24 09:31:46,325 | INFO     | did not find any defunct processes belonging to 18048
[2025-11-24 04:32:18] 2025-11-24 09:31:46,327 | INFO     | did not find any defunct processes belonging to 18048
[2025-11-24 04:32:18] 2025-11-24 09:31:46,329 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 04:32:18] 2025-11-24 09:31:46,329 | INFO     | ready for new job
[2025-11-24 04:32:18] 2025-11-24 09:31:46,329 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 04:32:18] 2025-11-24 09:31:46,333 | INFO     | ***************************************
[2025-11-24 04:32:18] 2025-11-24 09:31:46,333 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 04:32:18] 2025-11-24 09:31:46,333 | INFO     | ***************************************
[2025-11-24 04:32:18] 2025-11-24 09:31:46,333 | INFO     | 
[2025-11-24 04:32:18] 2025-11-24 09:31:46,334 | INFO     | architecture information:
[2025-11-24 04:32:18] 2025-11-24 09:31:46,334 | INFO     | executing command: cat /etc/os-release
[2025-11-24 04:32:18] 2025-11-24 09:31:46,347 | INFO     | cat /etc/os-release:
[2025-11-24 04:32:18] NAME="CentOS Linux"
[2025-11-24 04:32:18] VERSION="7 (Core)"
[2025-11-24 04:32:18] ID="centos"
[2025-11-24 04:32:18] ID_LIKE="rhel fedora"
[2025-11-24 04:32:18] VERSION_ID="7"
[2025-11-24 04:32:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 04:32:18] ANSI_COLOR="0;31"
[2025-11-24 04:32:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 04:32:18] HOME_URL="https://www.centos.org/"
[2025-11-24 04:32:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 04:32:18] 
[2025-11-24 04:32:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 04:32:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 04:32:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 04:32:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 04:32:18] 
[2025-11-24 04:32:18] 2025-11-24 09:31:46,348 | INFO     | ***************************************
[2025-11-24 04:32:18] 2025-11-24 09:31:46,850 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-24 04:32:18] 2025-11-24 09:31:46,863 | INFO     | sufficient remaining disk space (25376587776 B)
[2025-11-24 04:32:18] 2025-11-24 09:31:46,864 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 04:32:18] 2025-11-24 09:31:46,864 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 04:32:18] 2025-11-24 09:31:46,864 | INFO     | update_server=False
[2025-11-24 04:32:18] 2025-11-24 09:31:46,864 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 04:32:18] 2025-11-24 09:31:47,491 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 04:32:18] 2025-11-24 09:31:47,491 | INFO     | aborting loop
[2025-11-24 04:32:18] 2025-11-24 09:31:47,869 | INFO     | all data control threads have been joined
[2025-11-24 04:32:18] 2025-11-24 09:31:47,870 | INFO     | [job] retrieve thread has finished
[2025-11-24 04:32:18] 2025-11-24 09:31:47,955 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 04:32:18] 2025-11-24 09:31:48,156 | INFO     | all job control threads have been joined
[2025-11-24 04:32:18] 2025-11-24 09:31:48,226 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 04:32:18] 2025-11-24 09:31:48,338 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 04:32:18] 2025-11-24 09:31:48,349 | INFO     | [data] copytool_in thread has finished
[2025-11-24 04:32:18] 2025-11-24 09:31:48,356 | INFO     | all payload control threads have been joined
[2025-11-24 04:32:18] 2025-11-24 09:31:48,497 | INFO     | [job] job monitor thread has finished
[2025-11-24 04:32:18] 2025-11-24 09:31:48,641 | INFO     | [job] validate thread has finished
[2025-11-24 04:32:18] 2025-11-24 09:31:48,661 | INFO     | [payload] validate_post thread has finished
[2025-11-24 04:32:18] 2025-11-24 09:31:48,764 | INFO     | [payload] failed_post thread has finished
[2025-11-24 04:32:18] 2025-11-24 09:31:48,782 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 04:32:18] 2025-11-24 09:31:48,875 | INFO     | [data] control thread has finished
[2025-11-24 04:32:18] 2025-11-24 09:31:48,948 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 04:32:18] 2025-11-24 09:31:49,161 | INFO     | [job] control thread has finished
[2025-11-24 04:32:18] 2025-11-24 09:31:49,361 | INFO     | [payload] control thread has finished
[2025-11-24 04:32:18] 2025-11-24 09:31:49,866 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 04:32:18] 2025-11-24 09:31:49,958 | INFO     | [data] copytool_out thread has finished
[2025-11-24 04:32:18] 2025-11-24 09:31:50,871 | INFO     | [job] queue monitor thread has finished
[2025-11-24 04:32:18] 2025-11-24 09:31:52,101 | INFO     | [monitor] cgroup control has ended
[2025-11-24 04:32:18] 2025-11-24 09:31:52,954 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 04:32:18] 2025-11-24 09:31:57,399 | INFO     | job.realtimelogging is not enabled
[2025-11-24 04:32:18] 2025-11-24 09:31:58,405 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 04:32:18] 2025-11-24 09:31:58,629 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139879323150144)>', '<ExcThread(monitor, started 139878738151168)>']
[2025-11-24 04:32:18] 2025-11-24 09:32:03,647 | INFO     | all workflow threads have been joined
[2025-11-24 04:32:18] 2025-11-24 09:32:03,647 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 04:32:18] 2025-11-24 09:32:03,657 | INFO     | traces error code: 0
[2025-11-24 04:32:18] 2025-11-24 09:32:03,657 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 04:32:18] 2025-11-24 09:32:18,054 | INFO     | PID=11561 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 04:32:18] 2025-11-24 09:32:18,054 | INFO     | .. there are 3 such processes running
[2025-11-24 04:32:18] 2025-11-24 09:32:18,055 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 04:32:18] 2025-11-24 09:32:18,055 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 04:32:18] 2025-11-24 09:32:18,055 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 04:32:18] 2025-11-24 09:32:18,055 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 04:32:18] 2025-11-24 09:32:18,056 | CRITICAL | thread 'MainThread' is not alive
[2025-11-24 04:32:18] 2025-11-24 09:32:18,056 | INFO     | [monitor] control thread has ended
[2025-11-24 04:32:18] 2025-11-24 09:32:18,130 [wrapper] ==== pilot stdout END ====
[2025-11-24 04:32:18] 2025-11-24 09:32:18,132 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 04:32:18] 2025-11-24 09:32:18,134 [wrapper] pilotpid: 11561
[2025-11-24 04:32:18] 2025-11-24 09:32:18,136 [wrapper] Pilot exit status: 0
[2025-11-24 04:32:18] 2025-11-24 09:32:18,144 [wrapper] pandaids: 6895344170
[2025-11-24 04:32:18] 2025-11-24 09:32:18,171 [wrapper] cleanup supervisor_pilot  4855 11562
[2025-11-24 04:32:18] 2025-11-24 09:32:18,174 [wrapper] Test setup, not cleaning
[2025-11-24 04:32:18] 2025-11-24 09:32:18,177 [wrapper] apfmon messages muted
[2025-11-24 04:32:18] 2025-11-24 09:32:18,179 [wrapper] ==== wrapper stdout END ====
[2025-11-24 04:32:18] 2025-11-24 09:32:18,182 [wrapper] ==== wrapper stderr END ====
[2025-11-24 04:32:18]  *** Error codes and diagnostics ***
[2025-11-24 04:32:18]     "exeErrorCode": 0,
[2025-11-24 04:32:18]     "exeErrorDiag": "",
[2025-11-24 04:32:18]     "pilotErrorCode": 0,
[2025-11-24 04:32:18]     "pilotErrorDiag": "",
[2025-11-24 04:32:18]  *** Listing of results directory ***
[2025-11-24 04:32:18] total 1318108
[2025-11-24 04:32:18] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 11:22 pilot3.tar.gz
[2025-11-24 04:32:18] -rwx------ 1 boincer umatlas     36292 Nov 22 11:39 runpilot2-wrapper.sh
[2025-11-24 04:32:18] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 11:39 queuedata.json
[2025-11-24 04:32:18] -rw-r--r-- 1 boincer umatlas       100 Nov 23 09:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 04:32:18] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 09:25 run_atlas
[2025-11-24 04:32:18] -rw-r--r-- 1 boincer umatlas       105 Nov 23 09:25 job.xml
[2025-11-24 04:32:18] -rw-r--r-- 2 boincer umatlas 408929365 Nov 23 09:25 EVNT.47483658._000436.pool.root.1
[2025-11-24 04:32:18] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 09:25 start_atlas.sh
[2025-11-24 04:32:18] drwxrwx--x 2 boincer umatlas      4096 Nov 23 09:25 shared
[2025-11-24 04:32:18] -rw-r--r-- 2 boincer umatlas    590099 Nov 23 09:25 input.tar.gz
[2025-11-24 04:32:18] -rw-r--r-- 1 boincer umatlas         0 Nov 23 09:25 boinc_lockfile
[2025-11-24 04:32:18] -rw-r--r-- 1 boincer umatlas      2784 Nov 23 09:25 pandaJob.out
[2025-11-24 04:32:18] -rw------- 1 boincer umatlas        57 Nov 23 09:25 setup.sh.local
[2025-11-24 04:32:18] -rw------- 1 boincer umatlas    989785 Nov 23 09:25 agis_schedconf.cvmfs.json
[2025-11-24 04:32:18] drwx------ 5 boincer umatlas      4096 Nov 23 09:25 pilot3
[2025-11-24 04:32:18] -rw-r--r-- 1 boincer umatlas       533 Nov 24 04:22 boinc_task_state.xml
[2025-11-24 04:32:18] -rw-r--r-- 1 boincer umatlas      5953 Nov 24 04:30 init_data.xml
[2025-11-24 04:32:18] -rw------- 1 boincer umatlas 913295738 Nov 24 04:30 HITS.47556137._004316.pool.root.1
[2025-11-24 04:32:18] -rw------- 1 boincer umatlas      1069 Nov 24 04:31 memory_monitor_summary.json
[2025-11-24 04:32:18] -rw------- 1 boincer umatlas   1526164 Nov 24 04:31 agis_ddmendpoints.agis.ALL.json
[2025-11-24 04:32:18] -rw------- 1 boincer umatlas   2284853 Nov 24 04:31 log.47556137._004316.job.log.tgz.1
[2025-11-24 04:32:18] -rw------- 1 boincer umatlas      8651 Nov 24 04:31 heartbeat.json
[2025-11-24 04:32:18] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 04:31 boinc_mmap_file
[2025-11-24 04:32:18] -rw-r--r-- 1 boincer umatlas        29 Nov 24 04:31 wrapper_checkpoint.txt
[2025-11-24 04:32:18] -rw------- 1 boincer umatlas        95 Nov 24 04:32 pilot_heartbeat.json
[2025-11-24 04:32:18] -rw------- 1 boincer umatlas       890 Nov 24 04:32 pilotlog.txt
[2025-11-24 04:32:18] -rw------- 1 boincer umatlas   9513850 Nov 24 04:32 log.47556137._004316.job.log.1
[2025-11-24 04:32:18] -rw------- 1 boincer umatlas       353 Nov 24 04:32 output.list
[2025-11-24 04:32:18] -rw-r--r-- 1 boincer umatlas       620 Nov 24 04:32 runtime_log
[2025-11-24 04:32:18] -rw------- 1 boincer umatlas  11816960 Nov 24 04:32 result.tar.gz
[2025-11-24 04:32:18] -rw------- 1 boincer umatlas       667 Nov 24 04:32 SBANDmxo5g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTHKKDms6MThn.diag
[2025-11-24 04:32:18] -rw-r--r-- 1 boincer umatlas      9338 Nov 24 04:32 runtime_log.err
[2025-11-24 04:32:18] -rw-r--r-- 1 boincer umatlas     21235 Nov 24 04:32 stderr.txt
[2025-11-24 04:32:18] HITS file was successfully produced:
[2025-11-24 04:32:18] -rw------- 1 boincer umatlas 913295738 Nov 24 04:30 shared/HITS.pool.root.1
[2025-11-24 04:32:18]  *** Contents of shared directory: ***
[2025-11-24 04:32:18] total 1303384
[2025-11-24 04:32:18] -rw-r--r-- 2 boincer umatlas 408929365 Nov 23 09:25 ATLAS.root_0
[2025-11-24 04:32:18] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 09:25 start_atlas.sh
[2025-11-24 04:32:18] -rw-r--r-- 2 boincer umatlas    590099 Nov 23 09:25 input.tar.gz
[2025-11-24 04:32:18] -rw------- 1 boincer umatlas 913295738 Nov 24 04:30 HITS.pool.root.1
[2025-11-24 04:32:18] -rw------- 1 boincer umatlas  11816960 Nov 24 04:32 result.tar.gz
04:32:19 (7317): run_atlas exited; CPU time 529898.503851
04:32:19 (7317): called boinc_finish(0)

</stderr_txt>
]]>

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