Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:07:24 (28560): wrapper (7.7.26015): starting
09:07:24 (28560): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 09:07:24] Arguments: --nthreads 8
[2025-11-23 09:07:24] Threads: 8
[2025-11-23 09:07:24] Checking for CVMFS
[2025-11-23 09:07:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 09:07:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 09:07:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 09:07:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 09:07:25] 2.11.2.0 6491 4726 65108 153210 2 90 11194582 18432000 1805 130560 0 4189361 99.992 167561 12346 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 09:07:25] CVMFS is ok
[2025-11-23 09:07:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 09:07:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 09:07:25] Further information can be found at the LHC@home message board.
[2025-11-23 09:07:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 09:07:25] Checking for apptainer binary...
[2025-11-23 09:07:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 09:07:25] Running /usr/bin/apptainer --version
[2025-11-23 09:07:25] apptainer version 1.3.2-1.el7
[2025-11-23 09:07:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 09:07:26] c-206-29.aglt2.org
[2025-11-23 09:07:26] apptainer works
[2025-11-23 09:07:26] Set ATHENA_PROC_NUMBER=8
[2025-11-23 09:07:26] Set ATHENA_CORE_NUMBER=8
[2025-11-23 09:07:26] Starting ATLAS job with PandaID=6895344239
[2025-11-23 09:07:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:12:51 (16600): wrapper (7.7.26015): starting
18:12:51 (16600): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 18:12:51] Arguments: --nthreads 8
[2025-11-23 18:12:51] Threads: 8
[2025-11-23 18:12:51] This job has been restarted, cleaning up previous attempt
[2025-11-23 18:12:51] Checking for CVMFS
[2025-11-23 18:12:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 18:12:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 18:12:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 18:12:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 18:12:51] 2.11.2.0 6491 5271 62480 153225 1 1 11250821 18432001 1 130560 0 4697628 99.992 187303 13266 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 18:12:51] CVMFS is ok
[2025-11-23 18:12:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 18:12:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 18:12:51] Further information can be found at the LHC@home message board.
[2025-11-23 18:12:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 18:12:51] Checking for apptainer binary...
[2025-11-23 18:12:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 18:12:51] Running /usr/bin/apptainer --version
[2025-11-23 18:12:51] apptainer version 1.3.2-1.el7
[2025-11-23 18:12:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 18:12:52] c-206-29.aglt2.org
[2025-11-23 18:12:52] apptainer works
[2025-11-23 18:12:52] Set ATHENA_PROC_NUMBER=8
[2025-11-23 18:12:52] Set ATHENA_CORE_NUMBER=8
[2025-11-23 18:12:52] Starting ATLAS job with PandaID=6895344239
[2025-11-23 18:12:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 14:20:15]  *** The last 200 lines of the pilot log: ***
[2025-11-24 14:20:15] 2025-11-24 19:19:41,705 | INFO     | time since job start (72395s) is within the limit (172800.0s)
[2025-11-24 14:20:15] 2025-11-24 19:19:41,791 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 14:20:15] 2025-11-24 19:19:41,795 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 1795.6666666666667
[2025-11-24 14:20:15] 2025-11-24 19:19:41,798 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895344239/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 14:20:15] 2025-11-24 19:19:41,799 | INFO     | extracted standard info from prmon json
[2025-11-24 14:20:15] 2025-11-24 19:19:41,799 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 14:20:15] 2025-11-24 19:19:41,799 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 14:20:15] 2025-11-24 19:19:41,815 | INFO     | fitting pss+swap vs Time
[2025-11-24 14:20:15] 2025-11-24 19:19:41,816 | INFO     | sum of square deviations: 518597739861.2633
[2025-11-24 14:20:15] 2025-11-24 19:19:41,844 | INFO     | sum of deviations: 2487433039584.001
[2025-11-24 14:20:15] 2025-11-24 19:19:41,844 | INFO     | mean x: 1763975785.803707
[2025-11-24 14:20:15] 2025-11-24 19:19:41,844 | INFO     | mean y: 2873372.862679023
[2025-11-24 14:20:15] 2025-11-24 19:19:41,845 | INFO     | intersect: -8457964986.764803
[2025-11-24 14:20:15] 2025-11-24 19:19:41,846 | INFO     | chi2: 5.217689442689381
[2025-11-24 14:20:15] 2025-11-24 19:19:41,847 | INFO     | sum of square deviations: 512072131725.5199
[2025-11-24 14:20:15] 2025-11-24 19:19:41,872 | INFO     | sum of deviations: 2815704606244.4697
[2025-11-24 14:20:15] 2025-11-24 19:19:41,872 | INFO     | mean x: 1763975633.3071065
[2025-11-24 14:20:15] 2025-11-24 19:19:41,872 | INFO     | mean y: 2881038.5744500845
[2025-11-24 14:20:15] 2025-11-24 19:19:41,872 | INFO     | intersect: -9696600749.800123
[2025-11-24 14:20:15] 2025-11-24 19:19:41,873 | INFO     | chi2: 2.8620600343635085
[2025-11-24 14:20:15] 2025-11-24 19:19:41,874 | INFO     | current chi2=2.8620600343635085 (change=45.14698381726027 %)
[2025-11-24 14:20:15] 2025-11-24 19:19:41,875 | INFO     | sum of square deviations: 505601501364.7497
[2025-11-24 14:20:15] 2025-11-24 19:19:41,901 | INFO     | sum of deviations: 2928835799954.0117
[2025-11-24 14:20:15] 2025-11-24 19:19:41,902 | INFO     | mean x: 1763975480.8105352
[2025-11-24 14:20:15] 2025-11-24 19:19:41,902 | INFO     | mean y: 2883700.870008496
[2025-11-24 14:20:15] 2025-11-24 19:19:41,902 | INFO     | intersect: -10215429584.382402
[2025-11-24 14:20:15] 2025-11-24 19:19:41,903 | INFO     | chi2: 2.420660134980593
[2025-11-24 14:20:15] 2025-11-24 19:19:41,903 | INFO     | current chi2=2.420660134980593 (change=15.422454249149878 %)
[2025-11-24 14:20:15] 2025-11-24 19:19:41,903 | INFO     | right removable region: 1176
[2025-11-24 14:20:15] 2025-11-24 19:19:41,904 | INFO     | sum of square deviations: 512071549785.5199
[2025-11-24 14:20:15] 2025-11-24 19:19:41,936 | INFO     | sum of deviations: 2191985123587.4192
[2025-11-24 14:20:15] 2025-11-24 19:19:41,937 | INFO     | mean x: 1763975938.3071065
[2025-11-24 14:20:15] 2025-11-24 19:19:41,937 | INFO     | mean y: 2880267.9382402706
[2025-11-24 14:20:15] 2025-11-24 19:19:41,937 | INFO     | intersect: -7548035256.96225
[2025-11-24 14:20:15] 2025-11-24 19:19:41,938 | INFO     | chi2: 3.197946526323836
[2025-11-24 14:20:15] 2025-11-24 19:19:41,938 | INFO     | current chi2=3.197946526323836 (change=38.709527244774044 %)
[2025-11-24 14:20:15] 2025-11-24 19:19:41,939 | INFO     | sum of square deviations: 505600554036.605
[2025-11-24 14:20:15] 2025-11-24 19:19:41,970 | INFO     | sum of deviations: 2095473637352.666
[2025-11-24 14:20:15] 2025-11-24 19:19:41,970 | INFO     | mean x: 1763976090.8079865
[2025-11-24 14:20:15] 2025-11-24 19:19:41,970 | INFO     | mean y: 2882542.0781648257
[2025-11-24 14:20:15] 2025-11-24 19:19:41,971 | INFO     | intersect: -7307958725.198087
[2025-11-24 14:20:15] 2025-11-24 19:19:41,972 | INFO     | chi2: 3.1051162322932004
[2025-11-24 14:20:15] 2025-11-24 19:19:41,972 | INFO     | current chi2=3.1051162322932004 (change=2.902809451831192 %)
[2025-11-24 14:20:15] 2025-11-24 19:19:41,972 | INFO     | left removable region: 20
[2025-11-24 14:20:15] 2025-11-24 19:19:41,973 | INFO     | sum of square deviations: 479018490879.3841
[2025-11-24 14:20:15] 2025-11-24 19:19:41,999 | INFO     | sum of deviations: 2390008008019.4663
[2025-11-24 14:20:15] 2025-11-24 19:19:41,999 | INFO     | mean x: 1763976060.314879
[2025-11-24 14:20:15] 2025-11-24 19:19:41,999 | INFO     | mean y: 2896381.6937716263
[2025-11-24 14:20:15] 2025-11-24 19:19:41,999 | INFO     | intersect: -8798260547.274862
[2025-11-24 14:20:15] 2025-11-24 19:19:42,000 | INFO     | chi2: 0.23312989041411372
[2025-11-24 14:20:15] 2025-11-24 19:19:42,000 | INFO     | current memory leak: 4.99 B/s (using 1156 data points, chi2=0.23)
[2025-11-24 14:20:15] 2025-11-24 19:19:42,001 | INFO     | could have reported an average CPU frequency of 2564 MHz (43 samples)
[2025-11-24 14:20:15] 2025-11-24 19:19:42,002 | INFO     | ..............................
[2025-11-24 14:20:15] 2025-11-24 19:19:42,002 | INFO     | . Timing measurements:
[2025-11-24 14:20:15] 2025-11-24 19:19:42,002 | INFO     | . get job = 0 s
[2025-11-24 14:20:15] 2025-11-24 19:19:42,002 | INFO     | . initial setup = 2 s
[2025-11-24 14:20:15] 2025-11-24 19:19:42,002 | INFO     | . payload setup = 6 s
[2025-11-24 14:20:15] 2025-11-24 19:19:42,002 | INFO     | . stage-in = 0 s
[2025-11-24 14:20:15] 2025-11-24 19:19:42,002 | INFO     | . payload execution = 72358 s
[2025-11-24 14:20:15] 2025-11-24 19:19:42,002 | INFO     | . stage-out = 3 s
[2025-11-24 14:20:15] 2025-11-24 19:19:42,002 | INFO     | . log creation = 0 s
[2025-11-24 14:20:15] 2025-11-24 19:19:42,002 | INFO     | ..............................
[2025-11-24 14:20:15] 2025-11-24 19:19:42,087 | INFO     | 
[2025-11-24 14:20:15] 2025-11-24 19:19:42,088 | INFO     | job summary report
[2025-11-24 14:20:15] 2025-11-24 19:19:42,088 | INFO     | --------------------------------------------------
[2025-11-24 14:20:15] 2025-11-24 19:19:42,088 | INFO     | PanDA job id: 6895344239
[2025-11-24 14:20:15] 2025-11-24 19:19:42,088 | INFO     | task id: 47556137
[2025-11-24 14:20:15] 2025-11-24 19:19:42,088 | INFO     | errors: (none)
[2025-11-24 14:20:15] 2025-11-24 19:19:42,088 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 14:20:15] 2025-11-24 19:19:42,089 | INFO     | pilot state: finished 
[2025-11-24 14:20:15] 2025-11-24 19:19:42,089 | INFO     | transexitcode: 0
[2025-11-24 14:20:15] 2025-11-24 19:19:42,089 | INFO     | exeerrorcode: 0
[2025-11-24 14:20:15] 2025-11-24 19:19:42,089 | INFO     | exeerrordiag: 
[2025-11-24 14:20:15] 2025-11-24 19:19:42,089 | INFO     | exitcode: 0
[2025-11-24 14:20:15] 2025-11-24 19:19:42,089 | INFO     | exitmsg: OK
[2025-11-24 14:20:15] 2025-11-24 19:19:42,089 | INFO     | cpuconsumptiontime: 561811 s
[2025-11-24 14:20:15] 2025-11-24 19:19:42,090 | INFO     | nevents: 1000
[2025-11-24 14:20:15] 2025-11-24 19:19:42,090 | INFO     | neventsw: 0
[2025-11-24 14:20:15] 2025-11-24 19:19:42,090 | INFO     | pid: 14682
[2025-11-24 14:20:15] 2025-11-24 19:19:42,090 | INFO     | pgrp: 14682
[2025-11-24 14:20:15] 2025-11-24 19:19:42,090 | INFO     | corecount: 8
[2025-11-24 14:20:15] 2025-11-24 19:19:42,090 | INFO     | event service: False
[2025-11-24 14:20:15] 2025-11-24 19:19:42,091 | INFO     | sizes: {0: 2298585, 1: 2298784, 5: 2299046, 11: 2299102, 72368: 2357212, 72372: 2366997, 72376: 2367181, 72380: 2367427}
[2025-11-24 14:20:15] 2025-11-24 19:19:42,091 | INFO     | --------------------------------------------------
[2025-11-24 14:20:15] 2025-11-24 19:19:42,091 | INFO     | 
[2025-11-24 14:20:15] 2025-11-24 19:19:42,091 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-24 14:20:15] 2025-11-24 19:19:42,111 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 14:20:15] 2025-11-24 19:19:42,111 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 14:20:15] 2025-11-24 19:19:42,111 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 14:20:15] 2025-11-24 19:19:42,111 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 14:20:15] 2025-11-24 19:19:42,112 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 14:20:15] 2025-11-24 19:19:42,112 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 14:20:15] 2025-11-24 19:19:42,112 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 14:20:15] 2025-11-24 19:19:42,112 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 14:20:15] 2025-11-24 19:19:42,112 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 14:20:15] 2025-11-24 19:19:42,113 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 14:20:15] 2025-11-24 19:19:42,113 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 14:20:15] 2025-11-24 19:19:42,113 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 14:20:15] 2025-11-24 19:19:42,113 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 14:20:15] 2025-11-24 19:19:42,113 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 14:20:15] 2025-11-24 19:19:42,113 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 14:20:15] 2025-11-24 19:19:42,114 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 14:20:15] 2025-11-24 19:19:42,114 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 14:20:15] 2025-11-24 19:19:42,114 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 14:20:15] 2025-11-24 19:19:42,114 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 14:20:15] 2025-11-24 19:19:42,114 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 14:20:15] 2025-11-24 19:19:42,114 | INFO     | job 6895344239 has completed (purged errors)
[2025-11-24 14:20:15] 2025-11-24 19:19:42,115 | INFO     | overall cleanup function is called
[2025-11-24 14:20:15] 2025-11-24 19:19:42,839 | INFO     | PID=27805 has CPU usage=13.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 14:20:15] 2025-11-24 19:19:42,839 | INFO     | .. there are 2 such processes running
[2025-11-24 14:20:15] 2025-11-24 19:19:43,129 | INFO     | --- collectZombieJob: --- 10, [14682]
[2025-11-24 14:20:15] 2025-11-24 19:19:43,129 | INFO     | zombie collector waiting for pid 14682
[2025-11-24 14:20:15] 2025-11-24 19:19:43,130 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 14:20:15] 2025-11-24 19:19:43,130 | INFO     | collected zombie processes
[2025-11-24 14:20:15] 2025-11-24 19:19:43,130 | INFO     | will attempt to kill all subprocesses of pid=14682
[2025-11-24 14:20:15] 2025-11-24 19:19:43,237 | INFO     | process IDs to be killed: [14682] (in reverse order)
[2025-11-24 14:20:15] 2025-11-24 19:19:43,307 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 14:20:15] 2025-11-24 19:19:43,307 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 14:20:15] 2025-11-24 19:19:43,309 | INFO     | did not find any defunct processes belonging to 14682
[2025-11-24 14:20:15] 2025-11-24 19:19:43,312 | INFO     | did not find any defunct processes belonging to 14682
[2025-11-24 14:20:15] 2025-11-24 19:19:43,314 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 14:20:15] 2025-11-24 19:19:43,315 | INFO     | ready for new job
[2025-11-24 14:20:15] 2025-11-24 19:19:43,315 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 14:20:15] 2025-11-24 19:19:43,319 | INFO     | ***************************************
[2025-11-24 14:20:15] 2025-11-24 19:19:43,319 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 14:20:15] 2025-11-24 19:19:43,319 | INFO     | ***************************************
[2025-11-24 14:20:15] 2025-11-24 19:19:43,319 | INFO     | 
[2025-11-24 14:20:15] 2025-11-24 19:19:43,320 | INFO     | architecture information:
[2025-11-24 14:20:15] 2025-11-24 19:19:43,320 | INFO     | executing command: cat /etc/os-release
[2025-11-24 14:20:15] 2025-11-24 19:19:43,332 | INFO     | cat /etc/os-release:
[2025-11-24 14:20:15] NAME="CentOS Linux"
[2025-11-24 14:20:15] VERSION="7 (Core)"
[2025-11-24 14:20:15] ID="centos"
[2025-11-24 14:20:15] ID_LIKE="rhel fedora"
[2025-11-24 14:20:15] VERSION_ID="7"
[2025-11-24 14:20:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 14:20:15] ANSI_COLOR="0;31"
[2025-11-24 14:20:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 14:20:15] HOME_URL="https://www.centos.org/"
[2025-11-24 14:20:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 14:20:15] 
[2025-11-24 14:20:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 14:20:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 14:20:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 14:20:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 14:20:15] 
[2025-11-24 14:20:15] 2025-11-24 19:19:43,332 | INFO     | ***************************************
[2025-11-24 14:20:15] 2025-11-24 19:19:43,835 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-24 14:20:15] 2025-11-24 19:19:43,847 | INFO     | sufficient remaining disk space (24898437120 B)
[2025-11-24 14:20:15] 2025-11-24 19:19:43,847 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 14:20:15] 2025-11-24 19:19:43,847 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 14:20:15] 2025-11-24 19:19:43,847 | INFO     | update_server=False
[2025-11-24 14:20:15] 2025-11-24 19:19:43,847 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 14:20:15] 2025-11-24 19:19:43,848 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 14:20:15] 2025-11-24 19:19:43,848 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 14:20:15] 2025-11-24 19:19:43,848 | INFO     | aborting loop
[2025-11-24 14:20:15] 2025-11-24 19:19:43,861 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 14:20:15] 2025-11-24 19:19:44,496 | INFO     | all data control threads have been joined
[2025-11-24 14:20:15] 2025-11-24 19:19:44,836 | INFO     | all payload control threads have been joined
[2025-11-24 14:20:15] 2025-11-24 19:19:44,853 | INFO     | [job] retrieve thread has finished
[2025-11-24 14:20:15] 2025-11-24 19:19:44,854 | INFO     | [job] job monitor thread has finished
[2025-11-24 14:20:15] 2025-11-24 19:19:44,855 | INFO     | [job] queue monitor thread has finished
[2025-11-24 14:20:15] 2025-11-24 19:19:44,890 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 14:20:15] 2025-11-24 19:19:44,954 | INFO     | all job control threads have been joined
[2025-11-24 14:20:15] 2025-11-24 19:19:45,108 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 14:20:15] 2025-11-24 19:19:45,178 | INFO     | [data] copytool_in thread has finished
[2025-11-24 14:20:15] 2025-11-24 19:19:45,226 | INFO     | [job] validate thread has finished
[2025-11-24 14:20:15] 2025-11-24 19:19:45,352 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 14:20:15] 2025-11-24 19:19:45,501 | INFO     | [data] control thread has finished
[2025-11-24 14:20:15] 2025-11-24 19:19:45,613 | INFO     | [payload] failed_post thread has finished
[2025-11-24 14:20:15] 2025-11-24 19:19:45,699 | INFO     | [payload] validate_post thread has finished
[2025-11-24 14:20:15] 2025-11-24 19:19:45,843 | INFO     | [payload] control thread has finished
[2025-11-24 14:20:15] 2025-11-24 19:19:45,959 | INFO     | [job] control thread has finished
[2025-11-24 14:20:15] 2025-11-24 19:19:46,116 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 14:20:15] 2025-11-24 19:19:46,203 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 14:20:15] 2025-11-24 19:19:46,896 | INFO     | [data] copytool_out thread has finished
[2025-11-24 14:20:15] 2025-11-24 19:19:47,867 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 14:20:15] 2025-11-24 19:20:06,164 | INFO     | [monitor] cgroup control has ended
[2025-11-24 14:20:15] 2025-11-24 19:20:06,931 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139678509971264)>', '<ExcThread(monitor, started 139678191687424)>']
[2025-11-24 14:20:15] 2025-11-24 19:20:11,955 | INFO     | all workflow threads have been joined
[2025-11-24 14:20:15] 2025-11-24 19:20:11,956 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 14:20:15] 2025-11-24 19:20:11,956 | INFO     | traces error code: 0
[2025-11-24 14:20:15] 2025-11-24 19:20:11,956 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 14:20:15] 2025-11-24 19:20:15,044 | INFO     | PID=27805 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 14:20:15] 2025-11-24 19:20:15,045 | INFO     | .. there are 3 such processes running
[2025-11-24 14:20:15] 2025-11-24 19:20:15,045 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 14:20:15] 2025-11-24 19:20:15,045 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 14:20:15] 2025-11-24 19:20:15,045 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 14:20:15] 2025-11-24 19:20:15,045 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 14:20:15] 2025-11-24 19:20:15,045 | INFO     | [monitor] control thread has ended
[2025-11-24 14:20:15] 2025-11-24 19:20:15,138 [wrapper] ==== pilot stdout END ====
[2025-11-24 14:20:15] 2025-11-24 19:20:15,141 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 14:20:15] 2025-11-24 19:20:15,144 [wrapper] pilotpid: 27805
[2025-11-24 14:20:15] 2025-11-24 19:20:15,146 [wrapper] Pilot exit status: 0
[2025-11-24 14:20:15] 2025-11-24 19:20:15,156 [wrapper] pandaids: 6895344239 6895344239
[2025-11-24 14:20:15] 2025-11-24 19:20:15,192 [wrapper] cleanup supervisor_pilot 23671 27809
[2025-11-24 14:20:15] 2025-11-24 19:20:15,195 [wrapper] Test setup, not cleaning
[2025-11-24 14:20:15] 2025-11-24 19:20:15,198 [wrapper] apfmon messages muted
[2025-11-24 14:20:15] 2025-11-24 19:20:15,200 [wrapper] ==== wrapper stdout END ====
[2025-11-24 14:20:15] 2025-11-24 19:20:15,203 [wrapper] ==== wrapper stderr END ====
[2025-11-24 14:20:15]  *** Error codes and diagnostics ***
[2025-11-24 14:20:15]     "exeErrorCode": 0,
[2025-11-24 14:20:15]     "exeErrorDiag": "",
[2025-11-24 14:20:15]     "pilotErrorCode": 0,
[2025-11-24 14:20:15]     "pilotErrorDiag": "",
[2025-11-24 14:20:15]  *** Listing of results directory ***
[2025-11-24 14:20:15] total 1738800
[2025-11-24 14:20:15] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-24 14:20:15] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 11:22 pilot3.tar.gz
[2025-11-24 14:20:15] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 11:46 queuedata.json
[2025-11-24 14:20:15] -rwx------ 1 boincer umatlas     36292 Nov 22 11:47 runpilot2-wrapper.sh
[2025-11-24 14:20:15] -rw-r--r-- 1 boincer umatlas       100 Nov 23 09:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 14:20:15] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 09:07 run_atlas
[2025-11-24 14:20:15] -rw-r--r-- 1 boincer umatlas       105 Nov 23 09:07 job.xml
[2025-11-24 14:20:15] -rw-r--r-- 3 boincer umatlas 411426120 Nov 23 09:07 EVNT.47483658._000438.pool.root.1
[2025-11-24 14:20:15] -rw-r--r-- 3 boincer umatlas 411426120 Nov 23 09:07 ATLAS.root_0
[2025-11-24 14:20:15] drwxrwx--x 2 boincer umatlas      4096 Nov 23 09:07 shared
[2025-11-24 14:20:15] -rw-r--r-- 2 boincer umatlas    590102 Nov 23 09:07 input.tar.gz
[2025-11-24 14:20:15] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 09:07 start_atlas.sh
[2025-11-24 14:20:15] -rw-r--r-- 1 boincer umatlas         0 Nov 23 09:07 boinc_lockfile
[2025-11-24 14:20:15] -rw-r--r-- 1 boincer umatlas      2785 Nov 23 18:12 pandaJob.out
[2025-11-24 14:20:15] -rw------- 1 boincer umatlas        57 Nov 23 18:12 setup.sh.local
[2025-11-24 14:20:15] -rw------- 1 boincer umatlas    989786 Nov 23 18:13 agis_schedconf.cvmfs.json
[2025-11-24 14:20:15] -rw-r--r-- 1 boincer umatlas       534 Nov 24 14:09 boinc_task_state.xml
[2025-11-24 14:20:15] -rw------- 1 boincer umatlas 929081562 Nov 24 14:18 HITS.47556137._004334.pool.root.1
[2025-11-24 14:20:15] -rw------- 1 boincer umatlas      1065 Nov 24 14:19 memory_monitor_summary.json
[2025-11-24 14:20:15] -rw------- 1 boincer umatlas   1516227 Nov 24 14:19 agis_ddmendpoints.agis.ALL.json
[2025-11-24 14:20:15] -rw------- 1 boincer umatlas   2330970 Nov 24 14:19 log.47556137._004334.job.log.tgz.1
[2025-11-24 14:20:15] -rw------- 1 boincer umatlas        96 Nov 24 14:19 pilot_heartbeat.json
[2025-11-24 14:20:15] -rw------- 1 boincer umatlas      8645 Nov 24 14:19 heartbeat.json
[2025-11-24 14:20:15] -rw-r--r-- 1 boincer umatlas      5955 Nov 24 14:19 init_data.xml
[2025-11-24 14:20:15] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 14:20 boinc_mmap_file
[2025-11-24 14:20:15] -rw-r--r-- 1 boincer umatlas        30 Nov 24 14:20 wrapper_checkpoint.txt
[2025-11-24 14:20:15] -rw------- 1 boincer umatlas       820 Nov 24 14:20 pilotlog.txt
[2025-11-24 14:20:15] -rw------- 1 boincer umatlas  10010878 Nov 24 14:20 log.47556137._004334.job.log.1
[2025-11-24 14:20:15] -rw------- 1 boincer umatlas       353 Nov 24 14:20 output.list
[2025-11-24 14:20:15] -rw-r--r-- 1 boincer umatlas       620 Nov 24 14:20 runtime_log
[2025-11-24 14:20:15] -rw------- 1 boincer umatlas  12359680 Nov 24 14:20 result.tar.gz
[2025-11-24 14:20:15] -rw-r--r-- 1 boincer umatlas      9428 Nov 24 14:20 runtime_log.err
[2025-11-24 14:20:15] -rw------- 1 boincer umatlas       793 Nov 24 14:20 Mm8NDmww5g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWCIKDmI47Q4n.diag
[2025-11-24 14:20:15] -rw-r--r-- 1 boincer umatlas     23511 Nov 24 14:20 stderr.txt
[2025-11-24 14:20:15] HITS file was successfully produced:
[2025-11-24 14:20:15] -rw------- 1 boincer umatlas 929081562 Nov 24 14:18 shared/HITS.pool.root.1
[2025-11-24 14:20:15]  *** Contents of shared directory: ***
[2025-11-24 14:20:15] total 1321764
[2025-11-24 14:20:15] -rw-r--r-- 3 boincer umatlas 411426120 Nov 23 09:07 ATLAS.root_0
[2025-11-24 14:20:15] -rw-r--r-- 2 boincer umatlas    590102 Nov 23 09:07 input.tar.gz
[2025-11-24 14:20:15] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 09:07 start_atlas.sh
[2025-11-24 14:20:15] -rw------- 1 boincer umatlas 929081562 Nov 24 14:18 HITS.pool.root.1
[2025-11-24 14:20:15] -rw------- 1 boincer umatlas  12359680 Nov 24 14:20 result.tar.gz
14:20:16 (16600): run_atlas exited; CPU time 560863.845421
14:20:16 (16600): called boinc_finish(0)

</stderr_txt>
]]>

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