Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:30:07 (1416): wrapper (7.7.26015): starting
09:30:07 (1416): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 09:30:07] Arguments: --nthreads 8
[2025-11-23 09:30:07] Threads: 8
[2025-11-23 09:30:07] Checking for CVMFS
[2025-11-23 09:30:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 09:30:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 09:30:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 09:30:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 09:30:07] 2.11.2.0 3838 138266 129468 153211 1 90 12628115 18432001 1725 130560 0 113870604 99.988 4911859 26986 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 09:30:07] CVMFS is ok
[2025-11-23 09:30:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 09:30:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 09:30:07] Further information can be found at the LHC@home message board.
[2025-11-23 09:30:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 09:30:07] Checking for apptainer binary...
[2025-11-23 09:30:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 09:30:07] Running /usr/bin/apptainer --version
[2025-11-23 09:30:07] apptainer version 1.3.2-1.el7
[2025-11-23 09:30:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 09:30:08] c-206-4.aglt2.org
[2025-11-23 09:30:08] apptainer works
[2025-11-23 09:30:08] Set ATHENA_PROC_NUMBER=8
[2025-11-23 09:30:08] Set ATHENA_CORE_NUMBER=8
[2025-11-23 09:30:08] Starting ATLAS job with PandaID=6895335060
[2025-11-23 09:30:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 04:28:38]  *** The last 200 lines of the pilot log: ***
[2025-11-24 04:28:38] 2025-11-24 09:28:05,230 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 04:28:38] 2025-11-24 09:28:06,113 | INFO     | PID=5258 has CPU usage=13.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 04:28:38] 2025-11-24 09:28:06,113 | INFO     | .. there are 3 such processes running
[2025-11-24 04:28:38] 2025-11-24 09:28:06,552 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 04:28:38] 2025-11-24 09:28:06,560 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2089.5833333333335
[2025-11-24 04:28:38] 2025-11-24 09:28:06,566 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895335060/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 04:28:38] 2025-11-24 09:28:06,567 | INFO     | extracted standard info from prmon json
[2025-11-24 04:28:38] 2025-11-24 09:28:06,567 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 04:28:38] 2025-11-24 09:28:06,567 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 04:28:38] 2025-11-24 09:28:06,588 | INFO     | fitting pss+swap vs Time
[2025-11-24 04:28:38] 2025-11-24 09:28:06,589 | INFO     | sum of square deviations: 434477900111.44934
[2025-11-24 04:28:38] 2025-11-24 09:28:06,612 | INFO     | sum of deviations: 2129347870041.818
[2025-11-24 04:28:38] 2025-11-24 09:28:06,612 | INFO     | mean x: 1763942346.6130474
[2025-11-24 04:28:38] 2025-11-24 09:28:06,612 | INFO     | mean y: 3130455.313672922
[2025-11-24 04:28:38] 2025-11-24 09:28:06,613 | INFO     | intersect: -8641836015.18709
[2025-11-24 04:28:38] 2025-11-24 09:28:06,614 | INFO     | chi2: 5.487381025269451
[2025-11-24 04:28:38] 2025-11-24 09:28:06,615 | INFO     | sum of square deviations: 428679982022.0535
[2025-11-24 04:28:38] 2025-11-24 09:28:06,642 | INFO     | sum of deviations: 2479664012696.4214
[2025-11-24 04:28:38] 2025-11-24 09:28:06,642 | INFO     | mean x: 1763942194.115799
[2025-11-24 04:28:38] 2025-11-24 09:28:06,642 | INFO     | mean y: 3139662.0897666067
[2025-11-24 04:28:38] 2025-11-24 09:28:06,642 | INFO     | intersect: -10200238528.312162
[2025-11-24 04:28:38] 2025-11-24 09:28:06,644 | INFO     | chi2: 2.9647159300124035
[2025-11-24 04:28:38] 2025-11-24 09:28:06,644 | INFO     | current chi2=2.9647159300124035 (change=45.97211463246577 %)
[2025-11-24 04:28:38] 2025-11-24 09:28:06,646 | INFO     | sum of square deviations: 422933878857.6572
[2025-11-24 04:28:38] 2025-11-24 09:28:06,682 | INFO     | sum of deviations: 2608825970332.5317
[2025-11-24 04:28:38] 2025-11-24 09:28:06,683 | INFO     | mean x: 1763942041.6185753
[2025-11-24 04:28:38] 2025-11-24 09:28:06,683 | INFO     | mean y: 3143087.197475203
[2025-11-24 04:28:38] 2025-11-24 09:28:06,683 | INFO     | intersect: -10877559638.168058
[2025-11-24 04:28:38] 2025-11-24 09:28:06,684 | INFO     | chi2: 2.5254540606361013
[2025-11-24 04:28:38] 2025-11-24 09:28:06,685 | INFO     | current chi2=2.5254540606361013 (change=14.816322364296955 %)
[2025-11-24 04:28:38] 2025-11-24 09:28:06,685 | INFO     | right removable region: 1108
[2025-11-24 04:28:38] 2025-11-24 09:28:06,686 | INFO     | sum of square deviations: 428679563562.05383
[2025-11-24 04:28:38] 2025-11-24 09:28:06,730 | INFO     | sum of deviations: 1793087230261.2812
[2025-11-24 04:28:38] 2025-11-24 09:28:06,730 | INFO     | mean x: 1763942499.115799
[2025-11-24 04:28:38] 2025-11-24 09:28:06,730 | INFO     | mean y: 3139290.052064632
[2025-11-24 04:28:38] 2025-11-24 09:28:06,731 | INFO     | intersect: -7375105531.786432
[2025-11-24 04:28:38] 2025-11-24 09:28:06,732 | INFO     | chi2: 3.2398640994087304
[2025-11-24 04:28:38] 2025-11-24 09:28:06,732 | INFO     | current chi2=3.2398640994087304 (change=40.95791627209556 %)
[2025-11-24 04:28:38] 2025-11-24 09:28:06,734 | INFO     | sum of square deviations: 422933178212.12805
[2025-11-24 04:28:38] 2025-11-24 09:28:06,776 | INFO     | sum of deviations: 1703220147722.9824
[2025-11-24 04:28:38] 2025-11-24 09:28:06,776 | INFO     | mean x: 1763942651.616772
[2025-11-24 04:28:38] 2025-11-24 09:28:06,777 | INFO     | mean y: 3141674.5599639313
[2025-11-24 04:28:38] 2025-11-24 09:28:06,777 | INFO     | intersect: -7100539990.619535
[2025-11-24 04:28:38] 2025-11-24 09:28:06,778 | INFO     | chi2: 3.1614561131388292
[2025-11-24 04:28:38] 2025-11-24 09:28:06,778 | INFO     | current chi2=3.1614561131388292 (change=2.4201010864687356 %)
[2025-11-24 04:28:38] 2025-11-24 09:28:06,779 | INFO     | left removable region: 20
[2025-11-24 04:28:38] 2025-11-24 09:28:06,780 | INFO     | sum of square deviations: 399359679771.496
[2025-11-24 04:28:38] 2025-11-24 09:28:06,812 | INFO     | sum of deviations: 2062142697151.796
[2025-11-24 04:28:38] 2025-11-24 09:28:06,812 | INFO     | mean x: 1763942621.1231618
[2025-11-24 04:28:38] 2025-11-24 09:28:06,812 | INFO     | mean y: 3157588.3970588236
[2025-11-24 04:28:38] 2025-11-24 09:28:06,812 | INFO     | intersect: -9105176523.912968
[2025-11-24 04:28:38] 2025-11-24 09:28:06,813 | INFO     | chi2: 0.1534630439473126
[2025-11-24 04:28:38] 2025-11-24 09:28:06,813 | INFO     | current memory leak: 5.16 B/s (using 1088 data points, chi2=0.15)
[2025-11-24 04:28:38] 2025-11-24 09:28:06,814 | INFO     | could have reported an average CPU frequency of 2613 MHz (41 samples)
[2025-11-24 04:28:38] 2025-11-24 09:28:06,814 | INFO     | ..............................
[2025-11-24 04:28:38] 2025-11-24 09:28:06,814 | INFO     | . Timing measurements:
[2025-11-24 04:28:38] 2025-11-24 09:28:06,814 | INFO     | . get job = 0 s
[2025-11-24 04:28:38] 2025-11-24 09:28:06,815 | INFO     | . initial setup = 2 s
[2025-11-24 04:28:38] 2025-11-24 09:28:06,815 | INFO     | . payload setup = 6 s
[2025-11-24 04:28:38] 2025-11-24 09:28:06,815 | INFO     | . stage-in = 0 s
[2025-11-24 04:28:38] 2025-11-24 09:28:06,815 | INFO     | . payload execution = 68227 s
[2025-11-24 04:28:38] 2025-11-24 09:28:06,815 | INFO     | . stage-out = 3 s
[2025-11-24 04:28:38] 2025-11-24 09:28:06,815 | INFO     | . log creation = 0 s
[2025-11-24 04:28:38] 2025-11-24 09:28:06,815 | INFO     | ..............................
[2025-11-24 04:28:38] 2025-11-24 09:28:06,948 | INFO     | 
[2025-11-24 04:28:38] 2025-11-24 09:28:06,948 | INFO     | job summary report
[2025-11-24 04:28:38] 2025-11-24 09:28:06,948 | INFO     | --------------------------------------------------
[2025-11-24 04:28:38] 2025-11-24 09:28:06,948 | INFO     | PanDA job id: 6895335060
[2025-11-24 04:28:38] 2025-11-24 09:28:06,948 | INFO     | task id: 47556137
[2025-11-24 04:28:38] 2025-11-24 09:28:06,948 | INFO     | errors: (none)
[2025-11-24 04:28:38] 2025-11-24 09:28:06,949 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 04:28:38] 2025-11-24 09:28:06,949 | INFO     | pilot state: finished 
[2025-11-24 04:28:38] 2025-11-24 09:28:06,949 | INFO     | transexitcode: 0
[2025-11-24 04:28:38] 2025-11-24 09:28:06,949 | INFO     | exeerrorcode: 0
[2025-11-24 04:28:38] 2025-11-24 09:28:06,949 | INFO     | exeerrordiag: 
[2025-11-24 04:28:38] 2025-11-24 09:28:06,949 | INFO     | exitcode: 0
[2025-11-24 04:28:38] 2025-11-24 09:28:06,950 | INFO     | exitmsg: OK
[2025-11-24 04:28:38] 2025-11-24 09:28:06,950 | INFO     | cpuconsumptiontime: 526775 s
[2025-11-24 04:28:38] 2025-11-24 09:28:06,950 | INFO     | nevents: 1000
[2025-11-24 04:28:38] 2025-11-24 09:28:06,950 | INFO     | neventsw: 0
[2025-11-24 04:28:38] 2025-11-24 09:28:06,950 | INFO     | pid: 11694
[2025-11-24 04:28:38] 2025-11-24 09:28:06,950 | INFO     | pgrp: 11694
[2025-11-24 04:28:38] 2025-11-24 09:28:06,950 | INFO     | corecount: 8
[2025-11-24 04:28:38] 2025-11-24 09:28:06,950 | INFO     | event service: False
[2025-11-24 04:28:38] 2025-11-24 09:28:06,951 | INFO     | sizes: {0: 2298579, 1: 2298834, 2: 2298834, 5: 2299124, 12: 2299180, 68236: 2355014, 68237: 2355141, 68240: 2364191, 68243: 2364247, 68250: 2364589}
[2025-11-24 04:28:38] 2025-11-24 09:28:06,951 | INFO     | --------------------------------------------------
[2025-11-24 04:28:38] 2025-11-24 09:28:06,951 | INFO     | 
[2025-11-24 04:28:38] 2025-11-24 09:28:06,951 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 04:28:38] 2025-11-24 09:28:06,969 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 04:28:38] 2025-11-24 09:28:06,969 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 04:28:38] 2025-11-24 09:28:06,969 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 04:28:38] 2025-11-24 09:28:06,969 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 04:28:38] 2025-11-24 09:28:06,969 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 04:28:38] 2025-11-24 09:28:06,970 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 04:28:38] 2025-11-24 09:28:06,970 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 04:28:38] 2025-11-24 09:28:06,970 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 04:28:38] 2025-11-24 09:28:06,970 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 04:28:38] 2025-11-24 09:28:06,970 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 04:28:38] 2025-11-24 09:28:06,970 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 04:28:38] 2025-11-24 09:28:06,970 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 04:28:38] 2025-11-24 09:28:06,971 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 04:28:38] 2025-11-24 09:28:06,971 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 04:28:38] 2025-11-24 09:28:06,971 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 04:28:38] 2025-11-24 09:28:06,971 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 04:28:38] 2025-11-24 09:28:06,971 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 04:28:38] 2025-11-24 09:28:06,971 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 04:28:38] 2025-11-24 09:28:06,971 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 04:28:38] 2025-11-24 09:28:06,972 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 04:28:38] 2025-11-24 09:28:06,972 | INFO     | job 6895335060 has completed (purged errors)
[2025-11-24 04:28:38] 2025-11-24 09:28:06,972 | INFO     | overall cleanup function is called
[2025-11-24 04:28:38] 2025-11-24 09:28:07,983 | INFO     | --- collectZombieJob: --- 10, [11694]
[2025-11-24 04:28:38] 2025-11-24 09:28:07,983 | INFO     | zombie collector waiting for pid 11694
[2025-11-24 04:28:38] 2025-11-24 09:28:07,983 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 04:28:38] 2025-11-24 09:28:07,984 | INFO     | collected zombie processes
[2025-11-24 04:28:38] 2025-11-24 09:28:07,984 | INFO     | will attempt to kill all subprocesses of pid=11694
[2025-11-24 04:28:38] 2025-11-24 09:28:08,105 | INFO     | process IDs to be killed: [11694] (in reverse order)
[2025-11-24 04:28:38] 2025-11-24 09:28:08,163 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 04:28:38] 2025-11-24 09:28:08,163 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 04:28:38] 2025-11-24 09:28:08,167 | INFO     | did not find any defunct processes belonging to 11694
[2025-11-24 04:28:38] 2025-11-24 09:28:08,169 | INFO     | did not find any defunct processes belonging to 11694
[2025-11-24 04:28:38] 2025-11-24 09:28:08,170 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 04:28:38] 2025-11-24 09:28:08,171 | INFO     | ready for new job
[2025-11-24 04:28:38] 2025-11-24 09:28:08,171 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 04:28:38] 2025-11-24 09:28:08,174 | INFO     | ***************************************
[2025-11-24 04:28:38] 2025-11-24 09:28:08,174 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 04:28:38] 2025-11-24 09:28:08,174 | INFO     | ***************************************
[2025-11-24 04:28:38] 2025-11-24 09:28:08,175 | INFO     | 
[2025-11-24 04:28:38] 2025-11-24 09:28:08,175 | INFO     | architecture information:
[2025-11-24 04:28:38] 2025-11-24 09:28:08,176 | INFO     | executing command: cat /etc/os-release
[2025-11-24 04:28:38] 2025-11-24 09:28:08,190 | INFO     | cat /etc/os-release:
[2025-11-24 04:28:38] NAME="CentOS Linux"
[2025-11-24 04:28:38] VERSION="7 (Core)"
[2025-11-24 04:28:38] ID="centos"
[2025-11-24 04:28:38] ID_LIKE="rhel fedora"
[2025-11-24 04:28:38] VERSION_ID="7"
[2025-11-24 04:28:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 04:28:38] ANSI_COLOR="0;31"
[2025-11-24 04:28:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 04:28:38] HOME_URL="https://www.centos.org/"
[2025-11-24 04:28:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 04:28:38] 
[2025-11-24 04:28:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 04:28:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 04:28:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 04:28:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 04:28:38] 
[2025-11-24 04:28:38] 2025-11-24 09:28:08,190 | INFO     | ***************************************
[2025-11-24 04:28:38] 2025-11-24 09:28:08,693 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 04:28:38] 2025-11-24 09:28:08,710 | INFO     | sufficient remaining disk space (25770852352 B)
[2025-11-24 04:28:38] 2025-11-24 09:28:08,710 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 04:28:38] 2025-11-24 09:28:08,710 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 04:28:38] 2025-11-24 09:28:08,711 | INFO     | update_server=False
[2025-11-24 04:28:38] 2025-11-24 09:28:08,711 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 04:28:38] 2025-11-24 09:28:08,711 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 04:28:38] 2025-11-24 09:28:08,738 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 04:28:38] 2025-11-24 09:28:08,739 | INFO     | aborting loop
[2025-11-24 04:28:38] 2025-11-24 09:28:09,423 | INFO     | all data control threads have been joined
[2025-11-24 04:28:38] 2025-11-24 09:28:09,685 | INFO     | all payload control threads have been joined
[2025-11-24 04:28:38] 2025-11-24 09:28:09,716 | INFO     | [job] retrieve thread has finished
[2025-11-24 04:28:38] 2025-11-24 09:28:09,717 | INFO     | [job] queue monitor thread has finished
[2025-11-24 04:28:38] 2025-11-24 09:28:09,744 | INFO     | [job] job monitor thread has finished
[2025-11-24 04:28:38] 2025-11-24 09:28:09,785 | INFO     | [job] validate thread has finished
[2025-11-24 04:28:38] 2025-11-24 09:28:09,862 | INFO     | [data] copytool_in thread has finished
[2025-11-24 04:28:38] 2025-11-24 09:28:09,862 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 04:28:38] 2025-11-24 09:28:09,920 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 04:28:38] 2025-11-24 09:28:09,949 | INFO     | all job control threads have been joined
[2025-11-24 04:28:38] 2025-11-24 09:28:09,989 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 04:28:38] 2025-11-24 09:28:10,036 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 04:28:38] 2025-11-24 09:28:10,210 | INFO     | [payload] failed_post thread has finished
[2025-11-24 04:28:38] 2025-11-24 09:28:10,427 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 04:28:38] 2025-11-24 09:28:10,428 | INFO     | [data] control thread has finished
[2025-11-24 04:28:38] 2025-11-24 09:28:10,551 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 04:28:38] 2025-11-24 09:28:10,689 | INFO     | [payload] validate_post thread has finished
[2025-11-24 04:28:38] 2025-11-24 09:28:10,690 | INFO     | [payload] control thread has finished
[2025-11-24 04:28:38] 2025-11-24 09:28:10,954 | INFO     | [job] control thread has finished
[2025-11-24 04:28:38] 2025-11-24 09:28:11,994 | INFO     | [data] copytool_out thread has finished
[2025-11-24 04:28:38] 2025-11-24 09:28:14,433 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 04:28:38] 2025-11-24 09:28:14,435 | INFO     | [monitor] cgroup control has ended
[2025-11-24 04:28:38] 2025-11-24 09:28:15,350 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139634456713024)>', '<ExcThread(monitor, started 139633698510592)>']
[2025-11-24 04:28:38] 2025-11-24 09:28:20,352 | INFO     | all workflow threads have been joined
[2025-11-24 04:28:38] 2025-11-24 09:28:20,352 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 04:28:38] 2025-11-24 09:28:20,352 | INFO     | traces error code: 0
[2025-11-24 04:28:38] 2025-11-24 09:28:20,352 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 04:28:38] 2025-11-24 09:28:38,316 | INFO     | PID=5258 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 04:28:38] 2025-11-24 09:28:38,316 | INFO     | .. there are 3 such processes running
[2025-11-24 04:28:38] 2025-11-24 09:28:38,317 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 04:28:38] 2025-11-24 09:28:38,317 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 04:28:38] 2025-11-24 09:28:38,317 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 04:28:38] 2025-11-24 09:28:38,317 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 04:28:38] 2025-11-24 09:28:38,317 | INFO     | [monitor] control thread has ended
[2025-11-24 04:28:38] 2025-11-24 09:28:38,428 [wrapper] ==== pilot stdout END ====
[2025-11-24 04:28:38] 2025-11-24 09:28:38,430 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 04:28:38] 2025-11-24 09:28:38,433 [wrapper] pilotpid: 5258
[2025-11-24 04:28:38] 2025-11-24 09:28:38,435 [wrapper] Pilot exit status: 0
[2025-11-24 04:28:38] 2025-11-24 09:28:38,443 [wrapper] pandaids: 6895335060
[2025-11-24 04:28:38] 2025-11-24 09:28:38,485 [wrapper] cleanup supervisor_pilot 15924 5259
[2025-11-24 04:28:38] 2025-11-24 09:28:38,487 [wrapper] Test setup, not cleaning
[2025-11-24 04:28:38] 2025-11-24 09:28:38,489 [wrapper] apfmon messages muted
[2025-11-24 04:28:38] 2025-11-24 09:28:38,491 [wrapper] ==== wrapper stdout END ====
[2025-11-24 04:28:38] 2025-11-24 09:28:38,492 [wrapper] ==== wrapper stderr END ====
[2025-11-24 04:28:38]  *** Error codes and diagnostics ***
[2025-11-24 04:28:38]     "exeErrorCode": 0,
[2025-11-24 04:28:38]     "exeErrorDiag": "",
[2025-11-24 04:28:38]     "pilotErrorCode": 0,
[2025-11-24 04:28:38]     "pilotErrorDiag": "",
[2025-11-24 04:28:38]  *** Listing of results directory ***
[2025-11-24 04:28:38] total 1320440
[2025-11-24 04:28:38] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 23:09 pilot3.tar.gz
[2025-11-24 04:28:38] -rwx------ 1 boincer umatlas     36292 Nov 21 23:26 runpilot2-wrapper.sh
[2025-11-24 04:28:38] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 23:26 queuedata.json
[2025-11-24 04:28:38] -rw-r--r-- 1 boincer umatlas       100 Nov 23 09:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 04:28:38] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 09:30 run_atlas
[2025-11-24 04:28:38] -rw-r--r-- 1 boincer umatlas       105 Nov 23 09:30 job.xml
[2025-11-24 04:28:38] -rw-r--r-- 2 boincer umatlas 410083557 Nov 23 09:30 EVNT.47483658._000249.pool.root.1
[2025-11-24 04:28:38] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 09:30 start_atlas.sh
[2025-11-24 04:28:38] drwxrwx--x 2 boincer umatlas      4096 Nov 23 09:30 shared
[2025-11-24 04:28:38] -rw-r--r-- 2 boincer umatlas    590091 Nov 23 09:30 input.tar.gz
[2025-11-24 04:28:38] -rw-r--r-- 1 boincer umatlas         0 Nov 23 09:30 boinc_lockfile
[2025-11-24 04:28:38] -rw-r--r-- 1 boincer umatlas      2785 Nov 23 09:30 pandaJob.out
[2025-11-24 04:28:38] -rw------- 1 boincer umatlas        57 Nov 23 09:30 setup.sh.local
[2025-11-24 04:28:38] -rw------- 1 boincer umatlas    989785 Nov 23 09:30 agis_schedconf.cvmfs.json
[2025-11-24 04:28:38] drwx------ 5 boincer umatlas      4096 Nov 23 09:30 pilot3
[2025-11-24 04:28:38] -rw-r--r-- 1 boincer umatlas       533 Nov 24 04:17 boinc_task_state.xml
[2025-11-24 04:28:38] -rw-r--r-- 1 boincer umatlas      5953 Nov 24 04:22 init_data.xml
[2025-11-24 04:28:38] -rw------- 1 boincer umatlas 914629345 Nov 24 04:27 HITS.47556137._002452.pool.root.1
[2025-11-24 04:28:38] -rw------- 1 boincer umatlas      1064 Nov 24 04:27 memory_monitor_summary.json
[2025-11-24 04:28:38] -rw------- 1 boincer umatlas   1526164 Nov 24 04:27 agis_ddmendpoints.agis.ALL.json
[2025-11-24 04:28:38] -rw------- 1 boincer umatlas   2297186 Nov 24 04:27 log.47556137._002452.job.log.tgz.1
[2025-11-24 04:28:38] -rw------- 1 boincer umatlas      8675 Nov 24 04:28 heartbeat.json
[2025-11-24 04:28:38] -rw-r--r-- 1 boincer umatlas        29 Nov 24 04:28 wrapper_checkpoint.txt
[2025-11-24 04:28:38] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 04:28 boinc_mmap_file
[2025-11-24 04:28:38] -rw------- 1 boincer umatlas       819 Nov 24 04:28 pilotlog.txt
[2025-11-24 04:28:38] -rw------- 1 boincer umatlas        95 Nov 24 04:28 pilot_heartbeat.json
[2025-11-24 04:28:38] -rw------- 1 boincer umatlas   9449520 Nov 24 04:28 log.47556137._002452.job.log.1
[2025-11-24 04:28:38] -rw------- 1 boincer umatlas       353 Nov 24 04:28 output.list
[2025-11-24 04:28:38] -rw-r--r-- 1 boincer umatlas       620 Nov 24 04:28 runtime_log
[2025-11-24 04:28:38] -rw------- 1 boincer umatlas  11765760 Nov 24 04:28 result.tar.gz
[2025-11-24 04:28:38] -rw-r--r-- 1 boincer umatlas      9338 Nov 24 04:28 runtime_log.err
[2025-11-24 04:28:38] -rw------- 1 boincer umatlas       667 Nov 24 04:28 bQzKDmnNug8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmhwHKDmnXGgTm.diag
[2025-11-24 04:28:38] -rw-r--r-- 1 boincer umatlas     21416 Nov 24 04:28 stderr.txt
[2025-11-24 04:28:38] HITS file was successfully produced:
[2025-11-24 04:28:38] -rw------- 1 boincer umatlas 914629345 Nov 24 04:27 shared/HITS.pool.root.1
[2025-11-24 04:28:38]  *** Contents of shared directory: ***
[2025-11-24 04:28:38] total 1305764
[2025-11-24 04:28:38] -rw-r--r-- 2 boincer umatlas 410083557 Nov 23 09:30 ATLAS.root_0
[2025-11-24 04:28:38] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 09:30 start_atlas.sh
[2025-11-24 04:28:38] -rw-r--r-- 2 boincer umatlas    590091 Nov 23 09:30 input.tar.gz
[2025-11-24 04:28:38] -rw------- 1 boincer umatlas 914629345 Nov 24 04:27 HITS.pool.root.1
[2025-11-24 04:28:38] -rw------- 1 boincer umatlas  11765760 Nov 24 04:28 result.tar.gz
04:28:39 (1416): run_atlas exited; CPU time 525922.185979
04:28:39 (1416): called boinc_finish(0)

</stderr_txt>
]]>

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