Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:52:40 (9868): wrapper (7.7.26015): starting
22:52:40 (9868): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 22:52:40] Arguments: --nthreads 8
[2025-11-25 22:52:40] Threads: 8
[2025-11-25 22:52:40] Checking for CVMFS
[2025-11-25 22:52:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 22:52:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 22:52:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 22:52:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 22:52:43] 2.11.2.0 30743 80821 109848 153298 3 85 16290021 25165825 4632 130560 8 23858541 99.867 13638054 1757 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 22:52:43] CVMFS is ok
[2025-11-25 22:52:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 22:52:43] Checking for apptainer binary...
[2025-11-25 22:52:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 22:52:43] Running /usr/bin/apptainer --version
[2025-11-25 22:52:43] apptainer version 1.3.2-1.el7
[2025-11-25 22:52:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 22:52:57] cg-vwn349.simple-grid.lan
[2025-11-25 22:52:57] apptainer works
[2025-11-25 22:52:57] Set ATHENA_PROC_NUMBER=8
[2025-11-25 22:52:57] Set ATHENA_CORE_NUMBER=8
[2025-11-25 22:52:57] Starting ATLAS job with PandaID=6895343969
[2025-11-25 22:52:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 23:04:19]  *** The last 200 lines of the pilot log: ***
[2025-11-26 23:04:19] 2025-11-26 22:03:19,868 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:04:19] 2025-11-26 22:03:21,765 | INFO     | time since job start (86804s) is within the limit (172800.0s)
[2025-11-26 23:04:19] 2025-11-26 22:03:22,373 | INFO     | monitor loop #5842: job 0:6895343969 is in state 'finished'
[2025-11-26 23:04:19] 2025-11-26 22:03:22,373 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:04:19] 2025-11-26 22:03:22,955 | INFO     | PID=13640 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 23:04:19] 2025-11-26 22:03:22,955 | INFO     | .. there are 9 such processes running
[2025-11-26 23:04:19] 2025-11-26 22:03:23,956 | INFO     | time since job start (86806s) is within the limit (172800.0s)
[2025-11-26 23:04:19] 2025-11-26 22:03:24,881 | INFO     | monitor loop #5843: job 0:6895343969 is in state 'finished'
[2025-11-26 23:04:19] 2025-11-26 22:03:24,881 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:04:19] 2025-11-26 22:03:25,963 | INFO     | time since job start (86808s) is within the limit (172800.0s)
[2025-11-26 23:04:19] 2025-11-26 22:03:27,393 | INFO     | monitor loop #5844: job 0:6895343969 is in state 'finished'
[2025-11-26 23:04:19] 2025-11-26 22:03:27,393 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:04:19] 2025-11-26 22:03:27,971 | INFO     | time since job start (86810s) is within the limit (172800.0s)
[2025-11-26 23:04:19] 2025-11-26 22:03:29,893 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 23:04:19] 2025-11-26 22:03:29,895 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 23:04:19] 2025-11-26 22:03:29,897 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6895343969/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 23:04:19] 2025-11-26 22:03:29,897 | INFO     | extracted standard info from prmon json
[2025-11-26 23:04:19] 2025-11-26 22:03:29,897 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 23:04:19] 2025-11-26 22:03:29,897 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 23:04:19] 2025-11-26 22:03:29,936 | INFO     | fitting pss+swap vs Time
[2025-11-26 23:04:19] 2025-11-26 22:03:29,939 | INFO     | sum of square deviations: 874788370366.655
[2025-11-26 23:04:19] 2025-11-26 22:03:29,976 | INFO     | monitor loop #5845: job 0:6895343969 is in state 'finished'
[2025-11-26 23:04:19] 2025-11-26 22:03:29,976 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:04:19] 2025-11-26 22:03:29,993 | INFO     | time since job start (86812s) is within the limit (172800.0s)
[2025-11-26 23:04:19] 2025-11-26 22:03:30,043 | INFO     | sum of deviations: 3511252343308.8223
[2025-11-26 23:04:19] 2025-11-26 22:03:30,044 | INFO     | mean x: 1764151386.113942
[2025-11-26 23:04:19] 2025-11-26 22:03:30,044 | INFO     | mean y: 2828728.0445859875
[2025-11-26 23:04:19] 2025-11-26 22:03:30,044 | INFO     | intersect: -7078176116.416021
[2025-11-26 23:04:19] 2025-11-26 22:03:30,046 | INFO     | chi2: 26.099342902702865
[2025-11-26 23:04:19] 2025-11-26 22:03:30,048 | INFO     | sum of square deviations: 865535132740.4288
[2025-11-26 23:04:19] 2025-11-26 22:03:30,129 | INFO     | sum of deviations: 3982888083171.4883
[2025-11-26 23:04:19] 2025-11-26 22:03:30,129 | INFO     | mean x: 1764151233.6178977
[2025-11-26 23:04:19] 2025-11-26 22:03:30,130 | INFO     | mean y: 2836500.2982954546
[2025-11-26 23:04:19] 2025-11-26 22:03:30,130 | INFO     | intersect: -8115166639.611458
[2025-11-26 23:04:19] 2025-11-26 22:03:30,132 | INFO     | chi2: 22.795158075933877
[2025-11-26 23:04:19] 2025-11-26 22:03:30,132 | INFO     | current chi2=22.795158075933877 (change=12.66003071068431 %)
[2025-11-26 23:04:19] 2025-11-26 22:03:30,132 | INFO     | right removable region: 1407
[2025-11-26 23:04:19] 2025-11-26 22:03:30,134 | INFO     | sum of square deviations: 865534172600.4292
[2025-11-26 23:04:19] 2025-11-26 22:03:30,204 | INFO     | sum of deviations: 2924920867864.301
[2025-11-26 23:04:19] 2025-11-26 22:03:30,204 | INFO     | mean x: 1764151538.6178977
[2025-11-26 23:04:19] 2025-11-26 22:03:30,204 | INFO     | mean y: 2838389.6938920454
[2025-11-26 23:04:19] 2025-11-26 22:03:30,204 | INFO     | intersect: -5958802193.341181
[2025-11-26 23:04:19] 2025-11-26 22:03:30,206 | INFO     | chi2: 21.417079515960502
[2025-11-26 23:04:19] 2025-11-26 22:03:30,206 | INFO     | current chi2=21.417079515960502 (change=17.940158126576687 %)
[2025-11-26 23:04:19] 2025-11-26 22:03:30,206 | INFO     | left removable region: 10
[2025-11-26 23:04:19] 2025-11-26 22:03:30,208 | INFO     | sum of square deviations: 845406285626.574
[2025-11-26 23:04:19] 2025-11-26 22:03:30,272 | INFO     | sum of deviations: 2999023365046.036
[2025-11-26 23:04:19] 2025-11-26 22:03:30,272 | INFO     | mean x: 1764151508.1267002
[2025-11-26 23:04:19] 2025-11-26 22:03:30,272 | INFO     | mean y: 2856562.7229778096
[2025-11-26 23:04:19] 2025-11-26 22:03:30,272 | INFO     | intersect: -6255355237.100516
[2025-11-26 23:04:19] 2025-11-26 22:03:30,274 | INFO     | chi2: 13.778583145912172
[2025-11-26 23:04:19] 2025-11-26 22:03:30,275 | INFO     | current memory leak: 3.55 B/s (using 1397 data points, chi2=13.78)
[2025-11-26 23:04:19] 2025-11-26 22:03:30,276 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-26 23:04:19] 2025-11-26 22:03:30,276 | INFO     | ..............................
[2025-11-26 23:04:19] 2025-11-26 22:03:30,276 | INFO     | . Timing measurements:
[2025-11-26 23:04:19] 2025-11-26 22:03:30,276 | INFO     | . get job = 0 s
[2025-11-26 23:04:19] 2025-11-26 22:03:30,277 | INFO     | . initial setup = 16 s
[2025-11-26 23:04:19] 2025-11-26 22:03:30,277 | INFO     | . payload setup = 164 s
[2025-11-26 23:04:19] 2025-11-26 22:03:30,277 | INFO     | . stage-in = 0 s
[2025-11-26 23:04:19] 2025-11-26 22:03:30,277 | INFO     | . payload execution = 86340 s
[2025-11-26 23:04:19] 2025-11-26 22:03:30,277 | INFO     | . stage-out = 7 s
[2025-11-26 23:04:19] 2025-11-26 22:03:30,277 | INFO     | . log creation = 2 s
[2025-11-26 23:04:19] 2025-11-26 22:03:30,277 | INFO     | ..............................
[2025-11-26 23:04:19] 2025-11-26 22:03:30,794 | INFO     | 
[2025-11-26 23:04:19] 2025-11-26 22:03:30,794 | INFO     | job summary report
[2025-11-26 23:04:19] 2025-11-26 22:03:30,794 | INFO     | --------------------------------------------------
[2025-11-26 23:04:19] 2025-11-26 22:03:30,794 | INFO     | PanDA job id: 6895343969
[2025-11-26 23:04:19] 2025-11-26 22:03:30,794 | INFO     | task id: 47556137
[2025-11-26 23:04:19] 2025-11-26 22:03:30,795 | INFO     | errors: (none)
[2025-11-26 23:04:19] 2025-11-26 22:03:30,795 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 23:04:19] 2025-11-26 22:03:30,795 | INFO     | pilot state: finished 
[2025-11-26 23:04:19] 2025-11-26 22:03:30,795 | INFO     | transexitcode: 0
[2025-11-26 23:04:19] 2025-11-26 22:03:30,795 | INFO     | exeerrorcode: 0
[2025-11-26 23:04:19] 2025-11-26 22:03:30,795 | INFO     | exeerrordiag: 
[2025-11-26 23:04:19] 2025-11-26 22:03:30,795 | INFO     | exitcode: 0
[2025-11-26 23:04:19] 2025-11-26 22:03:30,795 | INFO     | exitmsg: OK
[2025-11-26 23:04:19] 2025-11-26 22:03:30,795 | INFO     | cpuconsumptiontime: 322896 s
[2025-11-26 23:04:19] 2025-11-26 22:03:30,795 | INFO     | nevents: 1000
[2025-11-26 23:04:19] 2025-11-26 22:03:30,796 | INFO     | neventsw: 0
[2025-11-26 23:04:19] 2025-11-26 22:03:30,796 | INFO     | pid: 20272
[2025-11-26 23:04:19] 2025-11-26 22:03:30,796 | INFO     | pgrp: 20272
[2025-11-26 23:04:19] 2025-11-26 22:03:30,796 | INFO     | corecount: 8
[2025-11-26 23:04:19] 2025-11-26 22:03:30,796 | INFO     | event service: False
[2025-11-26 23:04:19] 2025-11-26 22:03:30,796 | INFO     | sizes: {0: 2283385, 1: 2284071, 2: 2284270, 3: 2284270, 14: 2284298, 24: 2284326, 35: 2284482, 46: 2284510, 57: 2284538, 67: 2284566, 78: 2284594, 89: 2284930, 100
[2025-11-26 23:04:19] 2025-11-26 22:03:30,796 | INFO     | --------------------------------------------------
[2025-11-26 23:04:19] 2025-11-26 22:03:30,796 | INFO     | 
[2025-11-26 23:04:19] 2025-11-26 22:03:30,797 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-26 23:04:19] 2025-11-26 22:03:31,144 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 23:04:19] 2025-11-26 22:03:31,144 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 23:04:19] 2025-11-26 22:03:31,145 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 23:04:19] 2025-11-26 22:03:31,145 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 23:04:19] 2025-11-26 22:03:31,145 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 23:04:19] 2025-11-26 22:03:31,145 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 23:04:19] 2025-11-26 22:03:31,145 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 23:04:19] 2025-11-26 22:03:31,145 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 23:04:19] 2025-11-26 22:03:31,145 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 23:04:19] 2025-11-26 22:03:31,145 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 23:04:19] 2025-11-26 22:03:31,145 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 23:04:19] 2025-11-26 22:03:31,146 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 23:04:19] 2025-11-26 22:03:31,146 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 23:04:19] 2025-11-26 22:03:31,146 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 23:04:19] 2025-11-26 22:03:31,146 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 23:04:19] 2025-11-26 22:03:31,146 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 23:04:19] 2025-11-26 22:03:31,146 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 23:04:19] 2025-11-26 22:03:31,146 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 23:04:19] 2025-11-26 22:03:31,146 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 23:04:19] 2025-11-26 22:03:31,146 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 23:04:19] 2025-11-26 22:03:31,147 | INFO     | job 6895343969 has completed (purged errors)
[2025-11-26 23:04:19] 2025-11-26 22:03:31,147 | INFO     | overall cleanup function is called
[2025-11-26 23:04:19] 2025-11-26 22:03:32,168 | INFO     | --- collectZombieJob: --- 10, [20272]
[2025-11-26 23:04:19] 2025-11-26 22:03:32,168 | INFO     | zombie collector waiting for pid 20272
[2025-11-26 23:04:19] 2025-11-26 22:03:32,168 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 23:04:19] 2025-11-26 22:03:32,168 | INFO     | collected zombie processes
[2025-11-26 23:04:19] 2025-11-26 22:03:32,168 | INFO     | will attempt to kill all subprocesses of pid=20272
[2025-11-26 23:04:19] 2025-11-26 22:03:32,305 | INFO     | process IDs to be killed: [20272] (in reverse order)
[2025-11-26 23:04:19] 2025-11-26 22:03:32,840 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 23:04:19] 2025-11-26 22:03:32,840 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 23:04:19] 2025-11-26 22:03:32,844 | INFO     | did not find any defunct processes belonging to 20272
[2025-11-26 23:04:19] 2025-11-26 22:03:32,847 | INFO     | did not find any defunct processes belonging to 20272
[2025-11-26 23:04:19] 2025-11-26 22:03:32,893 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 23:04:19] 2025-11-26 22:03:32,893 | INFO     | ready for new job
[2025-11-26 23:04:19] 2025-11-26 22:03:32,893 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 23:04:19] 2025-11-26 22:03:32,899 | INFO     | ***************************************
[2025-11-26 23:04:19] 2025-11-26 22:03:32,899 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 23:04:19] 2025-11-26 22:03:32,899 | INFO     | ***************************************
[2025-11-26 23:04:19] 2025-11-26 22:03:32,899 | INFO     | 
[2025-11-26 23:04:19] 2025-11-26 22:03:32,900 | INFO     | pilot is running in a VM
[2025-11-26 23:04:19] 2025-11-26 22:03:32,900 | INFO     | architecture information:
[2025-11-26 23:04:19] 2025-11-26 22:03:32,912 | INFO     | executing command: cat /etc/os-release
[2025-11-26 23:04:19] 2025-11-26 22:03:33,138 | INFO     | cat /etc/os-release:
[2025-11-26 23:04:19] NAME="CentOS Linux"
[2025-11-26 23:04:19] VERSION="7 (Core)"
[2025-11-26 23:04:19] ID="centos"
[2025-11-26 23:04:19] ID_LIKE="rhel fedora"
[2025-11-26 23:04:19] VERSION_ID="7"
[2025-11-26 23:04:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 23:04:19] ANSI_COLOR="0;31"
[2025-11-26 23:04:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 23:04:19] HOME_URL="https://www.centos.org/"
[2025-11-26 23:04:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 23:04:19] 
[2025-11-26 23:04:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 23:04:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 23:04:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 23:04:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 23:04:19] 
[2025-11-26 23:04:19] 2025-11-26 22:03:33,138 | INFO     | ***************************************
[2025-11-26 23:04:19] 2025-11-26 22:03:33,642 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-26 23:04:19] 2025-11-26 22:03:33,891 | INFO     | sufficient remaining disk space (495650340864 B)
[2025-11-26 23:04:19] 2025-11-26 22:03:33,892 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 23:04:19] 2025-11-26 22:03:33,892 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 23:04:19] 2025-11-26 22:03:33,892 | INFO     | update_server=False
[2025-11-26 23:04:19] 2025-11-26 22:03:33,892 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 23:04:19] 2025-11-26 22:03:33,893 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:04:19] 2025-11-26 22:03:33,893 | INFO     | aborting loop
[2025-11-26 23:04:19] 2025-11-26 22:03:33,896 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 23:04:19] 2025-11-26 22:03:34,142 | INFO     | all data control threads have been joined
[2025-11-26 23:04:19] 2025-11-26 22:03:34,664 | INFO     | all payload control threads have been joined
[2025-11-26 23:04:19] 2025-11-26 22:03:34,898 | INFO     | [job] retrieve thread has finished
[2025-11-26 23:04:19] 2025-11-26 22:03:34,899 | INFO     | [job] job monitor thread has finished
[2025-11-26 23:04:19] 2025-11-26 22:03:35,064 | INFO     | [payload] failed_post thread has finished
[2025-11-26 23:04:19] 2025-11-26 22:03:35,149 | INFO     | [data] control thread has finished
[2025-11-26 23:04:19] 2025-11-26 22:03:35,378 | INFO     | all job control threads have been joined
[2025-11-26 23:04:19] 2025-11-26 22:03:35,430 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:04:19] 2025-11-26 22:03:35,537 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 23:04:19] 2025-11-26 22:03:35,654 | INFO     | [payload] validate_post thread has finished
[2025-11-26 23:04:19] 2025-11-26 22:03:35,670 | INFO     | [payload] control thread has finished
[2025-11-26 23:04:19] 2025-11-26 22:03:35,673 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 23:04:19] 2025-11-26 22:03:35,699 | INFO     | [job] validate thread has finished
[2025-11-26 23:04:19] 2025-11-26 22:03:35,854 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 23:04:19] 2025-11-26 22:03:35,903 | INFO     | [data] copytool_out thread has finished
[2025-11-26 23:04:19] 2025-11-26 22:03:36,005 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 23:04:19] 2025-11-26 22:03:36,059 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 23:04:19] 2025-11-26 22:03:36,059 | INFO     | [data] copytool_in thread has finished
[2025-11-26 23:04:19] 2025-11-26 22:03:36,384 | INFO     | [job] control thread has finished
[2025-11-26 23:04:19] 2025-11-26 22:03:36,436 | INFO     | [job] queue monitor thread has finished
[2025-11-26 23:04:19] 2025-11-26 22:03:40,014 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 23:04:19] 2025-11-26 22:04:03,212 | INFO     | PID=13640 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 23:04:19] 2025-11-26 22:04:03,212 | INFO     | .. there are 9 such processes running
[2025-11-26 23:04:19] 2025-11-26 22:04:03,212 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 23:04:19] 2025-11-26 22:04:03,212 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 23:04:19] 2025-11-26 22:04:03,212 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 23:04:19] 2025-11-26 22:04:08,787 | INFO     | [monitor] cgroup control has ended
[2025-11-26 23:04:19] 2025-11-26 22:04:09,231 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139761446315840)>', '<ExcThread(monitor, started 139760702052096)>']
[2025-11-26 23:04:19] 2025-11-26 22:04:09,248 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 23:04:19] 2025-11-26 22:04:09,248 | INFO     | [monitor] control thread has ended
[2025-11-26 23:04:19] 2025-11-26 22:04:14,257 | INFO     | all workflow threads have been joined
[2025-11-26 23:04:19] 2025-11-26 22:04:14,257 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 23:04:19] 2025-11-26 22:04:14,257 | INFO     | traces error code: 0
[2025-11-26 23:04:19] 2025-11-26 22:04:14,257 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 23:04:19] 2025-11-26 22:04:14,646 [wrapper] ==== pilot stdout END ====
[2025-11-26 23:04:19] 2025-11-26 22:04:14,737 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 23:04:19] 2025-11-26 22:04:14,807 [wrapper] pilotpid: 13640
[2025-11-26 23:04:19] 2025-11-26 22:04:14,854 [wrapper] Pilot exit status: 0
[2025-11-26 23:04:19] 2025-11-26 22:04:15,240 [wrapper] pandaids: 6895343969
[2025-11-26 23:04:19] 2025-11-26 22:04:15,974 [wrapper] cleanup supervisor_pilot 29843 13641
[2025-11-26 23:04:19] 2025-11-26 22:04:16,039 [wrapper] Test setup, not cleaning
[2025-11-26 23:04:19] 2025-11-26 22:04:16,134 [wrapper] apfmon messages muted
[2025-11-26 23:04:19] 2025-11-26 22:04:16,246 [wrapper] ==== wrapper stdout END ====
[2025-11-26 23:04:19] 2025-11-26 22:04:16,376 [wrapper] ==== wrapper stderr END ====
[2025-11-26 23:04:19]  *** Error codes and diagnostics ***
[2025-11-26 23:04:19]     "exeErrorCode": 0,
[2025-11-26 23:04:19]     "exeErrorDiag": "",
[2025-11-26 23:04:19]     "pilotErrorCode": 0,
[2025-11-26 23:04:19]     "pilotErrorDiag": "",
[2025-11-26 23:04:19]  *** Listing of results directory ***
[2025-11-26 23:04:19] total 1330684
[2025-11-26 23:04:19] -rw-r--r--. 1 boinc boinc    576529 Nov 22 16:48 pilot3.tar.gz
[2025-11-26 23:04:19] -rwx------. 1 boinc boinc     36292 Nov 22 17:17 runpilot2-wrapper.sh
[2025-11-26 23:04:19] -rw-r--r--. 1 boinc boinc      5112 Nov 22 17:17 queuedata.json
[2025-11-26 23:04:19] -rw-r--r--. 1 boinc boinc       100 Nov 25 22:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 23:04:19] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 22:52 run_atlas
[2025-11-26 23:04:19] -rw-r--r--. 1 boinc boinc       105 Nov 25 22:52 job.xml
[2025-11-26 23:04:19] -rw-r--r--. 1 boinc boinc      6393 Nov 25 22:52 init_data.xml
[2025-11-26 23:04:19] -rw-r--r--. 2 boinc boinc 408706151 Nov 25 22:52 EVNT.47483658._000427.pool.root.1
[2025-11-26 23:04:19] -rw-r--r--. 2 boinc boinc     15847 Nov 25 22:52 start_atlas.sh
[2025-11-26 23:04:19] drwxrwx--x. 2 boinc boinc        68 Nov 25 22:52 shared
[2025-11-26 23:04:19] -rw-r--r--. 2 boinc boinc    590100 Nov 25 22:52 input.tar.gz
[2025-11-26 23:04:19] -rw-r--r--. 1 boinc boinc         0 Nov 25 22:52 boinc_lockfile
[2025-11-26 23:04:19] -rw-r--r--. 1 boinc boinc      2784 Nov 25 22:52 pandaJob.out
[2025-11-26 23:04:19] -rw-------. 1 boinc boinc    991893 Nov 25 22:56 agis_schedconf.cvmfs.json
[2025-11-26 23:04:19] drwx------. 5 boinc boinc      4096 Nov 25 22:56 pilot3
[2025-11-26 23:04:19] -rw-r--r--. 1 boinc boinc       533 Nov 26 22:37 boinc_task_state.xml
[2025-11-26 23:04:19] -rw-------. 1 boinc boinc 921824087 Nov 26 23:00 HITS.47556137._004223.pool.root.1
[2025-11-26 23:04:19] -rw-------. 1 boinc boinc      1031 Nov 26 23:01 memory_monitor_summary.json
[2025-11-26 23:04:19] -rw-------. 1 boinc boinc   1516240 Nov 26 23:01 agis_ddmendpoints.agis.ALL.json
[2025-11-26 23:04:19] -rw-------. 1 boinc boinc   2495788 Nov 26 23:01 log.47556137._004223.job.log.tgz.1
[2025-11-26 23:04:19] -rw-------. 1 boinc boinc        95 Nov 26 23:03 pilot_heartbeat.json
[2025-11-26 23:04:19] -rw-------. 1 boinc boinc      7959 Nov 26 23:03 heartbeat.json
[2025-11-26 23:04:19] -rw-r--r--. 1 boinc boinc        29 Nov 26 23:03 wrapper_checkpoint.txt
[2025-11-26 23:04:19] -rw-r--r--. 1 boinc boinc      8192 Nov 26 23:03 boinc_mmap_file
[2025-11-26 23:04:19] -rw-------. 1 boinc boinc      4885 Nov 26 23:04 pilotlog.txt
[2025-11-26 23:04:19] -rw-------. 1 boinc boinc  11600377 Nov 26 23:04 log.47556137._004223.job.log.1
[2025-11-26 23:04:19] -rw-------. 1 boinc boinc       353 Nov 26 23:04 output.list
[2025-11-26 23:04:19] -rw-r--r--. 1 boinc boinc       620 Nov 26 23:04 runtime_log
[2025-11-26 23:04:19] -rw-------. 1 boinc boinc  14110720 Nov 26 23:04 result.tar.gz
[2025-11-26 23:04:19] -rw-r--r--. 1 boinc boinc      8833 Nov 26 23:04 runtime_log.err
[2025-11-26 23:04:19] -rw-------. 1 boinc boinc       662 Nov 26 23:04 oEVNDm2T5g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWBIKDm1TglXm.diag
[2025-11-26 23:04:19] -rw-r--r--. 1 boinc boinc     21524 Nov 26 23:04 stderr.txt
[2025-11-26 23:04:19] HITS file was successfully produced:
[2025-11-26 23:04:19] -rw-------. 1 boinc boinc 921824087 Nov 26 23:00 shared/HITS.pool.root.1
[2025-11-26 23:04:19]  *** Contents of shared directory: ***
[2025-11-26 23:04:19] total 1313724
[2025-11-26 23:04:19] -rw-r--r--. 2 boinc boinc 408706151 Nov 25 22:52 ATLAS.root_0
[2025-11-26 23:04:19] -rw-r--r--. 2 boinc boinc     15847 Nov 25 22:52 start_atlas.sh
[2025-11-26 23:04:19] -rw-r--r--. 2 boinc boinc    590100 Nov 25 22:52 input.tar.gz
[2025-11-26 23:04:19] -rw-------. 1 boinc boinc 921824087 Nov 26 23:00 HITS.pool.root.1
[2025-11-26 23:04:19] -rw-------. 1 boinc boinc  14110720 Nov 26 23:04 result.tar.gz
23:04:20 (9868): run_atlas exited; CPU time 323508.742897
23:04:20 (9868): called boinc_finish(0)

</stderr_txt>
]]>

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