Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:09:26 (19239): wrapper (7.7.26015): starting
06:09:26 (19239): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 06:09:26] Arguments: --nthreads 8
[2025-11-26 06:09:26] Threads: 8
[2025-11-26 06:09:26] Checking for CVMFS
[2025-11-26 06:09:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 06:09:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 06:09:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 06:09:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 06:09:28] 2.11.2.0 19320 78326 87004 153309 1 85 12956202 25165824 4632 130560 11 25604450 99.886 15793001 1583 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 06:09:28] CVMFS is ok
[2025-11-26 06:09:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 06:09:28] Checking for apptainer binary...
[2025-11-26 06:09:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 06:09:28] Running /usr/bin/apptainer --version
[2025-11-26 06:09:28] apptainer version 1.3.2-1.el7
[2025-11-26 06:09:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 06:09:52] cg-vwn360.simple-grid.lan
[2025-11-26 06:09:52] apptainer works
[2025-11-26 06:09:52] Set ATHENA_PROC_NUMBER=8
[2025-11-26 06:09:52] Set ATHENA_CORE_NUMBER=8
[2025-11-26 06:09:52] Starting ATLAS job with PandaID=6895344040
[2025-11-26 06:09:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 05:48:11]  *** The last 200 lines of the pilot log: ***
[2025-11-27 05:48:11] 2025-11-27 04:47:29,207 | INFO     | time since job start (84838s) is within the limit (172800.0s)
[2025-11-27 05:48:11] 2025-11-27 04:47:29,696 | INFO     | monitor loop #5717: job 0:6895344040 is in state 'finished'
[2025-11-27 05:48:11] 2025-11-27 04:47:29,697 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:48:11] 2025-11-27 04:47:31,214 | INFO     | time since job start (84840s) is within the limit (172800.0s)
[2025-11-27 05:48:11] 2025-11-27 04:47:32,211 | INFO     | monitor loop #5718: job 0:6895344040 is in state 'finished'
[2025-11-27 05:48:11] 2025-11-27 04:47:32,212 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:48:11] 2025-11-27 04:47:33,221 | INFO     | time since job start (84842s) is within the limit (172800.0s)
[2025-11-27 05:48:11] 2025-11-27 04:47:34,722 | INFO     | monitor loop #5719: job 0:6895344040 is in state 'finished'
[2025-11-27 05:48:11] 2025-11-27 04:47:34,723 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:48:11] 2025-11-27 04:47:35,229 | INFO     | time since job start (84844s) is within the limit (172800.0s)
[2025-11-27 05:48:11] 2025-11-27 04:47:37,227 | INFO     | monitor loop #5720: job 0:6895344040 is in state 'finished'
[2025-11-27 05:48:11] 2025-11-27 04:47:37,228 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:48:11] 2025-11-27 04:47:37,235 | INFO     | time since job start (84846s) is within the limit (172800.0s)
[2025-11-27 05:48:11] 2025-11-27 04:47:38,077 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 05:48:11] 2025-11-27 04:47:38,078 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 05:48:11] 2025-11-27 04:47:38,080 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6895344040/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 05:48:11] 2025-11-27 04:47:38,081 | INFO     | extracted standard info from prmon json
[2025-11-27 05:48:11] 2025-11-27 04:47:38,081 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 05:48:11] 2025-11-27 04:47:38,081 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 05:48:11] 2025-11-27 04:47:38,131 | INFO     | fitting pss+swap vs Time
[2025-11-27 05:48:11] 2025-11-27 04:47:38,133 | INFO     | sum of square deviations: 816693448882.2108
[2025-11-27 05:48:11] 2025-11-27 04:47:38,199 | INFO     | sum of deviations: 3848294599163.7173
[2025-11-27 05:48:11] 2025-11-27 04:47:38,200 | INFO     | mean x: 1764176631.0999277
[2025-11-27 05:48:11] 2025-11-27 04:47:38,200 | INFO     | mean y: 2828604.2411296163
[2025-11-27 05:48:11] 2025-11-27 04:47:38,200 | INFO     | intersect: -8310047433.548491
[2025-11-27 05:48:11] 2025-11-27 04:47:38,206 | INFO     | chi2: 25.465231704127845
[2025-11-27 05:48:11] 2025-11-27 04:47:38,208 | INFO     | sum of square deviations: 807855309241.1398
[2025-11-27 05:48:11] 2025-11-27 04:47:38,277 | INFO     | sum of deviations: 4300186824754.0923
[2025-11-27 05:48:11] 2025-11-27 04:47:38,277 | INFO     | mean x: 1764176478.6039245
[2025-11-27 05:48:11] 2025-11-27 04:47:38,277 | INFO     | mean y: 2836400.5763081396
[2025-11-27 05:48:11] 2025-11-27 04:47:38,277 | INFO     | intersect: -9387816062.870222
[2025-11-27 05:48:11] 2025-11-27 04:47:38,279 | INFO     | chi2: 22.33185133620583
[2025-11-27 05:48:11] 2025-11-27 04:47:38,279 | INFO     | current chi2=22.33185133620583 (change=12.30454293260604 %)
[2025-11-27 05:48:11] 2025-11-27 04:47:38,279 | INFO     | right removable region: 1375
[2025-11-27 05:48:11] 2025-11-27 04:47:38,281 | INFO     | sum of square deviations: 807854382651.1385
[2025-11-27 05:48:11] 2025-11-27 04:47:38,360 | INFO     | sum of deviations: 3259954636306.295
[2025-11-27 05:48:11] 2025-11-27 04:47:38,360 | INFO     | mean x: 1764176783.6039245
[2025-11-27 05:48:11] 2025-11-27 04:47:38,360 | INFO     | mean y: 2838754.833575581
[2025-11-27 05:48:11] 2025-11-27 04:47:38,360 | INFO     | intersect: -7116187159.341722
[2025-11-27 05:48:11] 2025-11-27 04:47:38,362 | INFO     | chi2: 20.456040339720023
[2025-11-27 05:48:11] 2025-11-27 04:47:38,362 | INFO     | current chi2=20.456040339720023 (change=19.6707079778734 %)
[2025-11-27 05:48:11] 2025-11-27 04:47:38,362 | INFO     | left removable region: 10
[2025-11-27 05:48:11] 2025-11-27 04:47:38,364 | INFO     | sum of square deviations: 788634505626.6263
[2025-11-27 05:48:11] 2025-11-27 04:47:38,421 | INFO     | sum of deviations: 3277913894198.1694
[2025-11-27 05:48:11] 2025-11-27 04:47:38,421 | INFO     | mean x: 1764176753.1128206
[2025-11-27 05:48:11] 2025-11-27 04:47:38,421 | INFO     | mean y: 2857686.024908425
[2025-11-27 05:48:11] 2025-11-27 04:47:38,421 | INFO     | intersect: -7329841364.792132
[2025-11-27 05:48:11] 2025-11-27 04:47:38,423 | INFO     | chi2: 12.54030264273791
[2025-11-27 05:48:11] 2025-11-27 04:47:38,423 | INFO     | current memory leak: 4.16 B/s (using 1365 data points, chi2=12.54)
[2025-11-27 05:48:11] 2025-11-27 04:47:38,425 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-27 05:48:11] 2025-11-27 04:47:38,425 | INFO     | ..............................
[2025-11-27 05:48:11] 2025-11-27 04:47:38,425 | INFO     | . Timing measurements:
[2025-11-27 05:48:11] 2025-11-27 04:47:38,425 | INFO     | . get job = 0 s
[2025-11-27 05:48:11] 2025-11-27 04:47:38,425 | INFO     | . initial setup = 5 s
[2025-11-27 05:48:11] 2025-11-27 04:47:38,425 | INFO     | . payload setup = 179 s
[2025-11-27 05:48:11] 2025-11-27 04:47:38,425 | INFO     | . stage-in = 0 s
[2025-11-27 05:48:11] 2025-11-27 04:47:38,425 | INFO     | . payload execution = 84384 s
[2025-11-27 05:48:11] 2025-11-27 04:47:38,425 | INFO     | . stage-out = 5 s
[2025-11-27 05:48:11] 2025-11-27 04:47:38,425 | INFO     | . log creation = 2 s
[2025-11-27 05:48:11] 2025-11-27 04:47:38,426 | INFO     | ..............................
[2025-11-27 05:48:11] 2025-11-27 04:47:38,549 | INFO     | 
[2025-11-27 05:48:11] 2025-11-27 04:47:38,550 | INFO     | job summary report
[2025-11-27 05:48:11] 2025-11-27 04:47:38,550 | INFO     | --------------------------------------------------
[2025-11-27 05:48:11] 2025-11-27 04:47:38,550 | INFO     | PanDA job id: 6895344040
[2025-11-27 05:48:11] 2025-11-27 04:47:38,550 | INFO     | task id: 47556137
[2025-11-27 05:48:11] 2025-11-27 04:47:38,550 | INFO     | errors: (none)
[2025-11-27 05:48:11] 2025-11-27 04:47:38,550 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 05:48:11] 2025-11-27 04:47:38,550 | INFO     | pilot state: finished 
[2025-11-27 05:48:11] 2025-11-27 04:47:38,550 | INFO     | transexitcode: 0
[2025-11-27 05:48:11] 2025-11-27 04:47:38,550 | INFO     | exeerrorcode: 0
[2025-11-27 05:48:11] 2025-11-27 04:47:38,550 | INFO     | exeerrordiag: 
[2025-11-27 05:48:11] 2025-11-27 04:47:38,550 | INFO     | exitcode: 0
[2025-11-27 05:48:11] 2025-11-27 04:47:38,550 | INFO     | exitmsg: OK
[2025-11-27 05:48:11] 2025-11-27 04:47:38,551 | INFO     | cpuconsumptiontime: 319448 s
[2025-11-27 05:48:11] 2025-11-27 04:47:38,551 | INFO     | nevents: 1000
[2025-11-27 05:48:11] 2025-11-27 04:47:38,551 | INFO     | neventsw: 0
[2025-11-27 05:48:11] 2025-11-27 04:47:38,551 | INFO     | pid: 29606
[2025-11-27 05:48:11] 2025-11-27 04:47:38,551 | INFO     | pgrp: 29606
[2025-11-27 05:48:11] 2025-11-27 04:47:38,551 | INFO     | corecount: 8
[2025-11-27 05:48:11] 2025-11-27 04:47:38,551 | INFO     | event service: False
[2025-11-27 05:48:11] 2025-11-27 04:47:38,551 | INFO     | sizes: {0: 2283436, 1: 2284037, 2: 2284320, 13: 2284320, 24: 2284376, 35: 2284404, 45: 2284560, 56: 2284588, 67: 2284616, 78: 2284644, 89: 2284700, 94: 2285270, 99
[2025-11-27 05:48:11] 2025-11-27 04:47:38,551 | INFO     | --------------------------------------------------
[2025-11-27 05:48:11] 2025-11-27 04:47:38,551 | INFO     | 
[2025-11-27 05:48:11] 2025-11-27 04:47:38,551 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-27 05:48:11] 2025-11-27 04:47:39,005 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 05:48:11] 2025-11-27 04:47:39,005 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 05:48:11] 2025-11-27 04:47:39,005 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 05:48:11] 2025-11-27 04:47:39,006 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 05:48:11] 2025-11-27 04:47:39,006 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 05:48:11] 2025-11-27 04:47:39,006 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 05:48:11] 2025-11-27 04:47:39,006 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 05:48:11] 2025-11-27 04:47:39,006 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 05:48:11] 2025-11-27 04:47:39,006 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 05:48:11] 2025-11-27 04:47:39,006 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 05:48:11] 2025-11-27 04:47:39,006 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 05:48:11] 2025-11-27 04:47:39,006 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 05:48:11] 2025-11-27 04:47:39,007 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 05:48:11] 2025-11-27 04:47:39,007 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 05:48:11] 2025-11-27 04:47:39,007 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 05:48:11] 2025-11-27 04:47:39,007 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 05:48:11] 2025-11-27 04:47:39,007 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 05:48:11] 2025-11-27 04:47:39,007 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 05:48:11] 2025-11-27 04:47:39,007 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 05:48:11] 2025-11-27 04:47:39,007 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 05:48:11] 2025-11-27 04:47:39,008 | INFO     | job 6895344040 has completed (purged errors)
[2025-11-27 05:48:11] 2025-11-27 04:47:39,008 | INFO     | overall cleanup function is called
[2025-11-27 05:48:11] 2025-11-27 04:47:40,023 | INFO     | --- collectZombieJob: --- 10, [29606]
[2025-11-27 05:48:11] 2025-11-27 04:47:40,024 | INFO     | zombie collector waiting for pid 29606
[2025-11-27 05:48:11] 2025-11-27 04:47:40,024 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 05:48:11] 2025-11-27 04:47:40,024 | INFO     | collected zombie processes
[2025-11-27 05:48:11] 2025-11-27 04:47:40,024 | INFO     | will attempt to kill all subprocesses of pid=29606
[2025-11-27 05:48:11] 2025-11-27 04:47:40,159 | INFO     | process IDs to be killed: [29606] (in reverse order)
[2025-11-27 05:48:11] 2025-11-27 04:47:40,992 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 05:48:11] 2025-11-27 04:47:40,992 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 05:48:11] 2025-11-27 04:47:40,995 | INFO     | did not find any defunct processes belonging to 29606
[2025-11-27 05:48:11] 2025-11-27 04:47:40,998 | INFO     | did not find any defunct processes belonging to 29606
[2025-11-27 05:48:11] 2025-11-27 04:47:41,073 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 05:48:11] 2025-11-27 04:47:41,074 | INFO     | ready for new job
[2025-11-27 05:48:11] 2025-11-27 04:47:41,074 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 05:48:11] 2025-11-27 04:47:41,079 | INFO     | ***************************************
[2025-11-27 05:48:11] 2025-11-27 04:47:41,079 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 05:48:11] 2025-11-27 04:47:41,079 | INFO     | ***************************************
[2025-11-27 05:48:11] 2025-11-27 04:47:41,079 | INFO     | 
[2025-11-27 05:48:11] 2025-11-27 04:47:41,080 | INFO     | pilot is running in a VM
[2025-11-27 05:48:11] 2025-11-27 04:47:41,080 | INFO     | architecture information:
[2025-11-27 05:48:11] 2025-11-27 04:47:41,088 | INFO     | executing command: cat /etc/os-release
[2025-11-27 05:48:11] 2025-11-27 04:47:41,256 | INFO     | cat /etc/os-release:
[2025-11-27 05:48:11] NAME="CentOS Linux"
[2025-11-27 05:48:11] VERSION="7 (Core)"
[2025-11-27 05:48:11] ID="centos"
[2025-11-27 05:48:11] ID_LIKE="rhel fedora"
[2025-11-27 05:48:11] VERSION_ID="7"
[2025-11-27 05:48:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 05:48:11] ANSI_COLOR="0;31"
[2025-11-27 05:48:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 05:48:11] HOME_URL="https://www.centos.org/"
[2025-11-27 05:48:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 05:48:11] 
[2025-11-27 05:48:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 05:48:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 05:48:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 05:48:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 05:48:11] 
[2025-11-27 05:48:11] 2025-11-27 04:47:41,256 | INFO     | ***************************************
[2025-11-27 05:48:11] 2025-11-27 04:47:41,760 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-27 05:48:11] 2025-11-27 04:47:41,987 | INFO     | sufficient remaining disk space (495865298944 B)
[2025-11-27 05:48:11] 2025-11-27 04:47:41,987 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 05:48:11] 2025-11-27 04:47:41,987 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 05:48:11] 2025-11-27 04:47:41,987 | INFO     | update_server=False
[2025-11-27 05:48:11] 2025-11-27 04:47:41,988 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 05:48:11] 2025-11-27 04:47:41,988 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 05:48:11] 2025-11-27 04:47:42,275 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 05:48:11] 2025-11-27 04:47:42,276 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 05:48:11] 2025-11-27 04:47:42,276 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:48:11] 2025-11-27 04:47:42,276 | INFO     | will abort loop
[2025-11-27 05:48:11] 2025-11-27 04:47:42,593 | INFO     | all job control threads have been joined
[2025-11-27 05:48:11] 2025-11-27 04:47:42,682 | INFO     | all payload control threads have been joined
[2025-11-27 05:48:11] 2025-11-27 04:47:42,885 | INFO     | all data control threads have been joined
[2025-11-27 05:48:11] 2025-11-27 04:47:42,993 | INFO     | [job] retrieve thread has finished
[2025-11-27 05:48:11] 2025-11-27 04:47:43,281 | INFO     | [job] job monitor thread has finished
[2025-11-27 05:48:11] 2025-11-27 04:47:43,346 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 05:48:11] 2025-11-27 04:47:43,434 | INFO     | [payload] failed_post thread has finished
[2025-11-27 05:48:11] 2025-11-27 04:47:43,558 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:48:11] 2025-11-27 04:47:43,586 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 05:48:11] 2025-11-27 04:47:43,599 | INFO     | [job] control thread has finished
[2025-11-27 05:48:11] 2025-11-27 04:47:43,688 | INFO     | [payload] control thread has finished
[2025-11-27 05:48:11] 2025-11-27 04:47:43,832 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 05:48:11] 2025-11-27 04:47:43,895 | INFO     | [data] control thread has finished
[2025-11-27 05:48:11] 2025-11-27 04:47:44,012 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 05:48:11] 2025-11-27 04:47:44,064 | INFO     | [payload] validate_post thread has finished
[2025-11-27 05:48:11] 2025-11-27 04:47:44,091 | INFO     | [data] copytool_in thread has finished
[2025-11-27 05:48:11] 2025-11-27 04:47:44,111 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 05:48:11] 2025-11-27 04:47:44,328 | INFO     | [job] validate thread has finished
[2025-11-27 05:48:11] 2025-11-27 04:47:44,564 | INFO     | [job] queue monitor thread has finished
[2025-11-27 05:48:11] 2025-11-27 04:47:45,353 | INFO     | [data] copytool_out thread has finished
[2025-11-27 05:48:11] 2025-11-27 04:47:45,996 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 05:48:11] 2025-11-27 04:47:58,833 | INFO     | [monitor] cgroup control has ended
[2025-11-27 05:48:11] 2025-11-27 04:48:00,398 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140613951432512)>', '<ExcThread(monitor, started 140613513103104)>']
[2025-11-27 05:48:11] 2025-11-27 04:48:05,424 | INFO     | all workflow threads have been joined
[2025-11-27 05:48:11] 2025-11-27 04:48:05,425 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 05:48:11] 2025-11-27 04:48:05,425 | INFO     | traces error code: 0
[2025-11-27 05:48:11] 2025-11-27 04:48:05,425 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 05:48:11] 2025-11-27 04:48:10,434 | INFO     | PID=23018 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 05:48:11] 2025-11-27 04:48:10,434 | INFO     | .. there are 9 such processes running
[2025-11-27 05:48:11] 2025-11-27 04:48:10,435 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 05:48:11] 2025-11-27 04:48:10,435 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 05:48:11] 2025-11-27 04:48:10,435 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 05:48:11] 2025-11-27 04:48:10,435 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 05:48:11] 2025-11-27 04:48:10,436 | CRITICAL | thread 'MainThread' is not alive
[2025-11-27 05:48:11] 2025-11-27 04:48:10,436 | INFO     | [monitor] control thread has ended
[2025-11-27 05:48:11] 2025-11-27 04:48:10,682 [wrapper] ==== pilot stdout END ====
[2025-11-27 05:48:11] 2025-11-27 04:48:10,784 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 05:48:11] 2025-11-27 04:48:10,833 [wrapper] pilotpid: 23018
[2025-11-27 05:48:11] 2025-11-27 04:48:10,907 [wrapper] Pilot exit status: 0
[2025-11-27 05:48:11] 2025-11-27 04:48:10,935 [wrapper] pandaids: 6895344040
[2025-11-27 05:48:11] 2025-11-27 04:48:10,969 [wrapper] cleanup supervisor_pilot 24756 23019
[2025-11-27 05:48:11] 2025-11-27 04:48:10,972 [wrapper] Test setup, not cleaning
[2025-11-27 05:48:11] 2025-11-27 04:48:10,982 [wrapper] apfmon messages muted
[2025-11-27 05:48:11] 2025-11-27 04:48:10,988 [wrapper] ==== wrapper stdout END ====
[2025-11-27 05:48:11] 2025-11-27 04:48:10,992 [wrapper] ==== wrapper stderr END ====
[2025-11-27 05:48:11]  *** Error codes and diagnostics ***
[2025-11-27 05:48:11]     "exeErrorCode": 0,
[2025-11-27 05:48:11]     "exeErrorDiag": "",
[2025-11-27 05:48:11]     "pilotErrorCode": 0,
[2025-11-27 05:48:11]     "pilotErrorDiag": "",
[2025-11-27 05:48:11]  *** Listing of results directory ***
[2025-11-27 05:48:11] total 1337448
[2025-11-27 05:48:11] -rw-r--r--. 1 boinc boinc    576529 Nov 22 17:22 pilot3.tar.gz
[2025-11-27 05:48:11] -rwx------. 1 boinc boinc     36292 Nov 22 17:32 runpilot2-wrapper.sh
[2025-11-27 05:48:11] -rw-r--r--. 1 boinc boinc      5112 Nov 22 17:32 queuedata.json
[2025-11-27 05:48:11] -rw-r--r--. 1 boinc boinc       100 Nov 26 06:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 05:48:11] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 06:09 run_atlas
[2025-11-27 05:48:11] -rw-r--r--. 1 boinc boinc       105 Nov 26 06:09 job.xml
[2025-11-27 05:48:11] -rw-r--r--. 2 boinc boinc 411862205 Nov 26 06:09 EVNT.47483658._000431.pool.root.1
[2025-11-27 05:48:11] -rw-r--r--. 2 boinc boinc    590096 Nov 26 06:09 input.tar.gz
[2025-11-27 05:48:11] -rw-r--r--. 1 boinc boinc      6391 Nov 26 06:09 init_data.xml
[2025-11-27 05:48:11] -rw-r--r--. 2 boinc boinc     15847 Nov 26 06:09 start_atlas.sh
[2025-11-27 05:48:11] drwxrwx--x. 2 boinc boinc        68 Nov 26 06:09 shared
[2025-11-27 05:48:11] -rw-r--r--. 1 boinc boinc         0 Nov 26 06:09 boinc_lockfile
[2025-11-27 05:48:11] -rw-r--r--. 1 boinc boinc      2785 Nov 26 06:09 pandaJob.out
[2025-11-27 05:48:11] -rw-------. 1 boinc boinc    991877 Nov 26 06:13 agis_schedconf.cvmfs.json
[2025-11-27 05:48:11] drwx------. 5 boinc boinc      4096 Nov 26 06:13 pilot3
[2025-11-27 05:48:11] -rw-r--r--. 1 boinc boinc       533 Nov 27 05:25 boinc_task_state.xml
[2025-11-27 05:48:11] -rw-------. 1 boinc boinc 926195638 Nov 27 05:44 HITS.47556137._004267.pool.root.1
[2025-11-27 05:48:11] -rw-------. 1 boinc boinc      1031 Nov 27 05:45 memory_monitor_summary.json
[2025-11-27 05:48:11] -rw-------. 1 boinc boinc   1516240 Nov 27 05:45 agis_ddmendpoints.agis.ALL.json
[2025-11-27 05:48:11] -rw-------. 1 boinc boinc   2469237 Nov 27 05:46 log.47556137._004267.job.log.tgz.1
[2025-11-27 05:48:11] -rw-------. 1 boinc boinc      8625 Nov 27 05:47 heartbeat.json
[2025-11-27 05:48:11] -rw-r--r--. 1 boinc boinc      8192 Nov 27 05:47 boinc_mmap_file
[2025-11-27 05:48:11] -rw-r--r--. 1 boinc boinc        29 Nov 27 05:47 wrapper_checkpoint.txt
[2025-11-27 05:48:11] -rw-------. 1 boinc boinc        95 Nov 27 05:48 pilot_heartbeat.json
[2025-11-27 05:48:11] -rw-------. 1 boinc boinc       890 Nov 27 05:48 pilotlog.txt
[2025-11-27 05:48:11] -rw-------. 1 boinc boinc  11325125 Nov 27 05:48 log.47556137._004267.job.log.1
[2025-11-27 05:48:11] -rw-------. 1 boinc boinc       353 Nov 27 05:48 output.list
[2025-11-27 05:48:11] -rw-r--r--. 1 boinc boinc       620 Nov 27 05:48 runtime_log
[2025-11-27 05:48:11] -rw-------. 1 boinc boinc  13813760 Nov 27 05:48 result.tar.gz
[2025-11-27 05:48:11] -rw-r--r--. 1 boinc boinc      8817 Nov 27 05:48 runtime_log.err
[2025-11-27 05:48:11] -rw-------. 1 boinc boinc       662 Nov 27 05:48 OKfNDmvh5g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmYGKKDm6KIe9m.diag
[2025-11-27 05:48:11] -rw-r--r--. 1 boinc boinc     21381 Nov 27 05:48 stderr.txt
[2025-11-27 05:48:11] HITS file was successfully produced:
[2025-11-27 05:48:11] -rw-------. 1 boinc boinc 926195638 Nov 27 05:44 shared/HITS.pool.root.1
[2025-11-27 05:48:11]  *** Contents of shared directory: ***
[2025-11-27 05:48:11] total 1320788
[2025-11-27 05:48:11] -rw-r--r--. 2 boinc boinc 411862205 Nov 26 06:09 ATLAS.root_0
[2025-11-27 05:48:11] -rw-r--r--. 2 boinc boinc    590096 Nov 26 06:09 input.tar.gz
[2025-11-27 05:48:11] -rw-r--r--. 2 boinc boinc     15847 Nov 26 06:09 start_atlas.sh
[2025-11-27 05:48:11] -rw-------. 1 boinc boinc 926195638 Nov 27 05:44 HITS.pool.root.1
[2025-11-27 05:48:11] -rw-------. 1 boinc boinc  13813760 Nov 27 05:48 result.tar.gz
05:48:12 (19239): run_atlas exited; CPU time 320038.541331
05:48:12 (19239): called boinc_finish(0)

</stderr_txt>
]]>

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