Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:48:17 (31427): wrapper (7.7.26015): starting
08:48:17 (31427): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 08:48:17] Arguments: --nthreads 8
[2025-11-23 08:48:17] Threads: 8
[2025-11-23 08:48:17] Checking for CVMFS
[2025-11-23 08:48:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 08:48:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 08:48:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 08:48:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 08:48:18] 2.11.2.0 14729 113427 147612 153210 0 82 16720806 18432001 1885 130560 0 81678179 99.973 4727263 29270 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 08:48:18] CVMFS is ok
[2025-11-23 08:48:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 08:48:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 08:48:18] Further information can be found at the LHC@home message board.
[2025-11-23 08:48:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 08:48:18] Checking for apptainer binary...
[2025-11-23 08:48:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 08:48:18] Running /usr/bin/apptainer --version
[2025-11-23 08:48:18] apptainer version 1.3.2-1.el7
[2025-11-23 08:48:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 08:48:19] c-206-30.aglt2.org
[2025-11-23 08:48:19] apptainer works
[2025-11-23 08:48:19] Set ATHENA_PROC_NUMBER=8
[2025-11-23 08:48:19] Set ATHENA_CORE_NUMBER=8
[2025-11-23 08:48:19] Starting ATLAS job with PandaID=6895344002
[2025-11-23 08:48:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 03:41:28]  *** The last 200 lines of the pilot log: ***
[2025-11-24 03:41:28] 2025-11-24 08:40:27,547 | INFO     | time since job start (67917s) is within the limit (172800.0s)
[2025-11-24 03:41:28] 2025-11-24 08:40:28,044 | INFO     | monitor loop #4847: job 0:6895344002 is in state 'finished'
[2025-11-24 03:41:28] 2025-11-24 08:40:28,044 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:41:28] 2025-11-24 08:40:29,056 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 03:41:28] 2025-11-24 08:40:29,062 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2483.5
[2025-11-24 03:41:28] 2025-11-24 08:40:29,067 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895344002/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 03:41:28] 2025-11-24 08:40:29,068 | INFO     | extracted standard info from prmon json
[2025-11-24 03:41:28] 2025-11-24 08:40:29,068 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 03:41:28] 2025-11-24 08:40:29,068 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 03:41:28] 2025-11-24 08:40:29,098 | INFO     | fitting pss+swap vs Time
[2025-11-24 03:41:28] 2025-11-24 08:40:29,099 | INFO     | sum of square deviations: 427528305045.3711
[2025-11-24 03:41:28] 2025-11-24 08:40:29,133 | INFO     | sum of deviations: 2096094293184.1243
[2025-11-24 03:41:28] 2025-11-24 08:40:29,133 | INFO     | mean x: 1763939652.5786164
[2025-11-24 03:41:28] 2025-11-24 08:40:29,133 | INFO     | mean y: 2865146.6271338724
[2025-11-24 03:41:28] 2025-11-24 08:40:29,133 | INFO     | intersect: -8645413331.446598
[2025-11-24 03:41:28] 2025-11-24 08:40:29,134 | INFO     | chi2: 5.090229705668294
[2025-11-24 03:41:28] 2025-11-24 08:40:29,135 | INFO     | sum of square deviations: 421792524148.68964
[2025-11-24 03:41:28] 2025-11-24 08:40:29,175 | INFO     | sum of deviations: 2401431334485.4604
[2025-11-24 03:41:28] 2025-11-24 08:40:29,175 | INFO     | mean x: 1763939500.0812275
[2025-11-24 03:41:28] 2025-11-24 08:40:29,175 | INFO     | mean y: 2873259.983754513
[2025-11-24 03:41:28] 2025-11-24 08:40:29,176 | INFO     | intersect: -10039930595.255787
[2025-11-24 03:41:28] 2025-11-24 08:40:29,177 | INFO     | chi2: 2.770116131934132
[2025-11-24 03:41:28] 2025-11-24 08:40:29,177 | INFO     | current chi2=2.770116131934132 (change=45.57974213129456 %)
[2025-11-24 03:41:28] 2025-11-24 08:40:29,179 | INFO     | sum of square deviations: 416108279101.98
[2025-11-24 03:41:28] 2025-11-24 08:40:29,221 | INFO     | sum of deviations: 2518943029786.489
[2025-11-24 03:41:28] 2025-11-24 08:40:29,221 | INFO     | mean x: 1763939347.5838623
[2025-11-24 03:41:28] 2025-11-24 08:40:29,222 | INFO     | mean y: 2876408.7352674524
[2025-11-24 03:41:28] 2025-11-24 08:40:29,222 | INFO     | intersect: -10675264228.484642
[2025-11-24 03:41:28] 2025-11-24 08:40:29,223 | INFO     | chi2: 2.28864445513165
[2025-11-24 03:41:28] 2025-11-24 08:40:29,224 | INFO     | current chi2=2.28864445513165 (change=17.380920288937926 %)
[2025-11-24 03:41:28] 2025-11-24 08:40:29,224 | INFO     | right removable region: 1102
[2025-11-24 03:41:28] 2025-11-24 08:40:29,225 | INFO     | sum of square deviations: 421792198957.8507
[2025-11-24 03:41:28] 2025-11-24 08:40:29,268 | INFO     | sum of deviations: 1806066897599.5483
[2025-11-24 03:41:28] 2025-11-24 08:40:29,268 | INFO     | mean x: 1763939805.080325
[2025-11-24 03:41:28] 2025-11-24 08:40:29,268 | INFO     | mean y: 2872848.3646209384
[2025-11-24 03:41:28] 2025-11-24 08:40:29,268 | INFO     | intersect: -7550119594.798434
[2025-11-24 03:41:28] 2025-11-24 08:40:29,270 | INFO     | chi2: 3.0297581400977136
[2025-11-24 03:41:28] 2025-11-24 08:40:29,270 | INFO     | current chi2=3.0297581400977136 (change=40.478950552587335 %)
[2025-11-24 03:41:28] 2025-11-24 08:40:29,272 | INFO     | sum of square deviations: 416107696186.4877
[2025-11-24 03:41:28] 2025-11-24 08:40:29,313 | INFO     | sum of deviations: 1736579536914.2834
[2025-11-24 03:41:28] 2025-11-24 08:40:29,314 | INFO     | mean x: 1763939957.5811424
[2025-11-24 03:41:28] 2025-11-24 08:40:29,314 | INFO     | mean y: 2874712.0135992747
[2025-11-24 03:41:28] 2025-11-24 08:40:29,314 | INFO     | intersect: -7358733983.894808
[2025-11-24 03:41:28] 2025-11-24 08:40:29,316 | INFO     | chi2: 2.985200283954809
[2025-11-24 03:41:28] 2025-11-24 08:40:29,316 | INFO     | current chi2=2.985200283954809 (change=1.4706737000950083 %)
[2025-11-24 03:41:28] 2025-11-24 08:40:29,316 | INFO     | left removable region: 20
[2025-11-24 03:41:28] 2025-11-24 08:40:29,318 | INFO     | sum of square deviations: 392790936894.6588
[2025-11-24 03:41:28] 2025-11-24 08:40:29,357 | INFO     | sum of deviations: 2067390017392.4524
[2025-11-24 03:41:28] 2025-11-24 08:40:29,358 | INFO     | mean x: 1763939927.0878003
[2025-11-24 03:41:28] 2025-11-24 08:40:29,358 | INFO     | mean y: 2888472.458410351
[2025-11-24 03:41:28] 2025-11-24 08:40:29,358 | INFO     | intersect: -9281317078.137829
[2025-11-24 03:41:28] 2025-11-24 08:40:29,360 | INFO     | chi2: 0.1630279007312662
[2025-11-24 03:41:28] 2025-11-24 08:40:29,360 | INFO     | current memory leak: 5.26 B/s (using 1082 data points, chi2=0.16)
[2025-11-24 03:41:28] 2025-11-24 08:40:29,361 | INFO     | could have reported an average CPU frequency of 2624 MHz (40 samples)
[2025-11-24 03:41:28] 2025-11-24 08:40:29,362 | INFO     | ..............................
[2025-11-24 03:41:28] 2025-11-24 08:40:29,362 | INFO     | . Timing measurements:
[2025-11-24 03:41:28] 2025-11-24 08:40:29,362 | INFO     | . get job = 0 s
[2025-11-24 03:41:28] 2025-11-24 08:40:29,362 | INFO     | . initial setup = 2 s
[2025-11-24 03:41:28] 2025-11-24 08:40:29,362 | INFO     | . payload setup = 5 s
[2025-11-24 03:41:28] 2025-11-24 08:40:29,362 | INFO     | . stage-in = 0 s
[2025-11-24 03:41:28] 2025-11-24 08:40:29,363 | INFO     | . payload execution = 67883 s
[2025-11-24 03:41:28] 2025-11-24 08:40:29,363 | INFO     | . stage-out = 4 s
[2025-11-24 03:41:28] 2025-11-24 08:40:29,363 | INFO     | . log creation = 0 s
[2025-11-24 03:41:28] 2025-11-24 08:40:29,363 | INFO     | ..............................
[2025-11-24 03:41:28] 2025-11-24 08:40:29,519 | INFO     | 
[2025-11-24 03:41:28] 2025-11-24 08:40:29,519 | INFO     | job summary report
[2025-11-24 03:41:28] 2025-11-24 08:40:29,519 | INFO     | --------------------------------------------------
[2025-11-24 03:41:28] 2025-11-24 08:40:29,520 | INFO     | PanDA job id: 6895344002
[2025-11-24 03:41:28] 2025-11-24 08:40:29,520 | INFO     | task id: 47556149
[2025-11-24 03:41:28] 2025-11-24 08:40:29,520 | INFO     | errors: (none)
[2025-11-24 03:41:28] 2025-11-24 08:40:29,520 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 03:41:28] 2025-11-24 08:40:29,520 | INFO     | pilot state: finished 
[2025-11-24 03:41:28] 2025-11-24 08:40:29,520 | INFO     | transexitcode: 0
[2025-11-24 03:41:28] 2025-11-24 08:40:29,521 | INFO     | exeerrorcode: 0
[2025-11-24 03:41:28] 2025-11-24 08:40:29,521 | INFO     | exeerrordiag: 
[2025-11-24 03:41:28] 2025-11-24 08:40:29,521 | INFO     | exitcode: 0
[2025-11-24 03:41:28] 2025-11-24 08:40:29,521 | INFO     | exitmsg: OK
[2025-11-24 03:41:28] 2025-11-24 08:40:29,521 | INFO     | cpuconsumptiontime: 528087 s
[2025-11-24 03:41:28] 2025-11-24 08:40:29,521 | INFO     | nevents: 1000
[2025-11-24 03:41:28] 2025-11-24 08:40:29,522 | INFO     | neventsw: 0
[2025-11-24 03:41:28] 2025-11-24 08:40:29,522 | INFO     | pid: 9314
[2025-11-24 03:41:28] 2025-11-24 08:40:29,522 | INFO     | pgrp: 9314
[2025-11-24 03:41:28] 2025-11-24 08:40:29,522 | INFO     | corecount: 8
[2025-11-24 03:41:28] 2025-11-24 08:40:29,522 | INFO     | event service: False
[2025-11-24 03:41:28] 2025-11-24 08:40:29,522 | INFO     | sizes: {0: 2298690, 1: 2298832, 4: 2299094, 11: 2299122, 67892: 2354735, 67893: 2354734, 67897: 2363968, 67904: 2364158}
[2025-11-24 03:41:28] 2025-11-24 08:40:29,523 | INFO     | --------------------------------------------------
[2025-11-24 03:41:28] 2025-11-24 08:40:29,523 | INFO     | 
[2025-11-24 03:41:28] 2025-11-24 08:40:29,523 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-24 03:41:28] 2025-11-24 08:40:29,539 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 03:41:28] 2025-11-24 08:40:29,539 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 03:41:28] 2025-11-24 08:40:29,539 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 03:41:28] 2025-11-24 08:40:29,540 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 03:41:28] 2025-11-24 08:40:29,540 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 03:41:28] 2025-11-24 08:40:29,540 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 03:41:28] 2025-11-24 08:40:29,540 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 03:41:28] 2025-11-24 08:40:29,540 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 03:41:28] 2025-11-24 08:40:29,540 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 03:41:28] 2025-11-24 08:40:29,540 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 03:41:28] 2025-11-24 08:40:29,540 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 03:41:28] 2025-11-24 08:40:29,540 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 03:41:28] 2025-11-24 08:40:29,541 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 03:41:28] 2025-11-24 08:40:29,541 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 03:41:28] 2025-11-24 08:40:29,541 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 03:41:28] 2025-11-24 08:40:29,541 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 03:41:28] 2025-11-24 08:40:29,541 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 03:41:28] 2025-11-24 08:40:29,541 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 03:41:28] 2025-11-24 08:40:29,541 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 03:41:28] 2025-11-24 08:40:29,541 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 03:41:28] 2025-11-24 08:40:29,541 | INFO     | job 6895344002 has completed (purged errors)
[2025-11-24 03:41:28] 2025-11-24 08:40:29,542 | INFO     | overall cleanup function is called
[2025-11-24 03:41:28] 2025-11-24 08:40:30,553 | INFO     | --- collectZombieJob: --- 10, [9314]
[2025-11-24 03:41:28] 2025-11-24 08:40:30,554 | INFO     | zombie collector waiting for pid 9314
[2025-11-24 03:41:28] 2025-11-24 08:40:30,554 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 03:41:28] 2025-11-24 08:40:30,554 | INFO     | collected zombie processes
[2025-11-24 03:41:28] 2025-11-24 08:40:30,554 | INFO     | will attempt to kill all subprocesses of pid=9314
[2025-11-24 03:41:28] 2025-11-24 08:40:30,708 | INFO     | process IDs to be killed: [9314] (in reverse order)
[2025-11-24 03:41:28] 2025-11-24 08:40:30,761 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 03:41:28] 2025-11-24 08:40:30,762 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 03:41:28] 2025-11-24 08:40:30,767 | INFO     | did not find any defunct processes belonging to 9314
[2025-11-24 03:41:28] 2025-11-24 08:40:30,773 | INFO     | did not find any defunct processes belonging to 9314
[2025-11-24 03:41:28] 2025-11-24 08:40:30,775 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 03:41:28] 2025-11-24 08:40:30,775 | INFO     | ready for new job
[2025-11-24 03:41:28] 2025-11-24 08:40:30,775 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 03:41:28] 2025-11-24 08:40:30,779 | INFO     | ***************************************
[2025-11-24 03:41:28] 2025-11-24 08:40:30,779 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 03:41:28] 2025-11-24 08:40:30,779 | INFO     | ***************************************
[2025-11-24 03:41:28] 2025-11-24 08:40:30,780 | INFO     | 
[2025-11-24 03:41:28] 2025-11-24 08:40:30,780 | INFO     | architecture information:
[2025-11-24 03:41:28] 2025-11-24 08:40:30,781 | INFO     | executing command: cat /etc/os-release
[2025-11-24 03:41:28] 2025-11-24 08:40:30,790 | INFO     | cat /etc/os-release:
[2025-11-24 03:41:28] NAME="CentOS Linux"
[2025-11-24 03:41:28] VERSION="7 (Core)"
[2025-11-24 03:41:28] ID="centos"
[2025-11-24 03:41:28] ID_LIKE="rhel fedora"
[2025-11-24 03:41:28] VERSION_ID="7"
[2025-11-24 03:41:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 03:41:28] ANSI_COLOR="0;31"
[2025-11-24 03:41:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 03:41:28] HOME_URL="https://www.centos.org/"
[2025-11-24 03:41:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 03:41:28] 
[2025-11-24 03:41:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 03:41:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 03:41:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 03:41:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 03:41:28] 
[2025-11-24 03:41:28] 2025-11-24 08:40:30,790 | INFO     | ***************************************
[2025-11-24 03:41:28] 2025-11-24 08:40:31,293 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-24 03:41:28] 2025-11-24 08:40:31,310 | INFO     | sufficient remaining disk space (25587351552 B)
[2025-11-24 03:41:28] 2025-11-24 08:40:31,310 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 03:41:28] 2025-11-24 08:40:31,311 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 03:41:28] 2025-11-24 08:40:31,311 | INFO     | update_server=False
[2025-11-24 03:41:28] 2025-11-24 08:40:31,311 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 03:41:28] 2025-11-24 08:40:31,311 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:41:28] 2025-11-24 08:40:31,312 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 03:41:28] 2025-11-24 08:40:31,372 | INFO     | all job control threads have been joined
[2025-11-24 03:41:28] 2025-11-24 08:40:31,552 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:41:28] 2025-11-24 08:40:31,552 | INFO     | aborting loop
[2025-11-24 03:41:28] 2025-11-24 08:40:31,643 | INFO     | all payload control threads have been joined
[2025-11-24 03:41:28] 2025-11-24 08:40:32,008 | INFO     | all data control threads have been joined
[2025-11-24 03:41:28] 2025-11-24 08:40:32,316 | INFO     | [job] retrieve thread has finished
[2025-11-24 03:41:28] 2025-11-24 08:40:32,318 | INFO     | [job] queue monitor thread has finished
[2025-11-24 03:41:28] 2025-11-24 08:40:32,334 | INFO     | [payload] validate_post thread has finished
[2025-11-24 03:41:28] 2025-11-24 08:40:32,378 | INFO     | [job] control thread has finished
[2025-11-24 03:41:28] 2025-11-24 08:40:32,558 | INFO     | [job] job monitor thread has finished
[2025-11-24 03:41:28] 2025-11-24 08:40:32,649 | INFO     | [payload] control thread has finished
[2025-11-24 03:41:28] 2025-11-24 08:40:32,762 | INFO     | [job] validate thread has finished
[2025-11-24 03:41:28] 2025-11-24 08:40:32,823 | INFO     | [payload] failed_post thread has finished
[2025-11-24 03:41:28] 2025-11-24 08:40:32,894 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 03:41:28] 2025-11-24 08:40:33,014 | INFO     | [data] control thread has finished
[2025-11-24 03:41:28] 2025-11-24 08:40:33,047 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 03:41:28] 2025-11-24 08:40:33,120 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 03:41:28] 2025-11-24 08:40:33,122 | INFO     | [data] copytool_in thread has finished
[2025-11-24 03:41:28] 2025-11-24 08:40:33,245 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 03:41:28] 2025-11-24 08:40:33,317 | INFO     | [data] copytool_out thread has finished
[2025-11-24 03:41:28] 2025-11-24 08:40:33,446 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 03:41:28] 2025-11-24 08:40:37,452 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 03:41:28] 2025-11-24 08:41:00,779 | INFO     | PID=2800 has CPU usage=8.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 03:41:28] 2025-11-24 08:41:00,779 | INFO     | .. there are 3 such processes running
[2025-11-24 03:41:28] 2025-11-24 08:41:00,780 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 03:41:28] 2025-11-24 08:41:00,780 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 03:41:28] 2025-11-24 08:41:00,780 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 03:41:28] 2025-11-24 08:41:21,942 | INFO     | [monitor] cgroup control has ended
[2025-11-24 03:41:28] 2025-11-24 08:41:23,521 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140490089224000)>', '<ExcThread(monitor, started 140489504315136)>']
[2025-11-24 03:41:28] 2025-11-24 08:41:23,890 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 03:41:28] 2025-11-24 08:41:23,891 | INFO     | [monitor] control thread has ended
[2025-11-24 03:41:28] 2025-11-24 08:41:28,526 | INFO     | all workflow threads have been joined
[2025-11-24 03:41:28] 2025-11-24 08:41:28,526 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 03:41:28] 2025-11-24 08:41:28,526 | INFO     | traces error code: 0
[2025-11-24 03:41:28] 2025-11-24 08:41:28,527 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 03:41:28] 2025-11-24 08:41:28,651 [wrapper] ==== pilot stdout END ====
[2025-11-24 03:41:28] 2025-11-24 08:41:28,654 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 03:41:28] 2025-11-24 08:41:28,657 [wrapper] pilotpid: 2800
[2025-11-24 03:41:28] 2025-11-24 08:41:28,659 [wrapper] Pilot exit status: 0
[2025-11-24 03:41:28] 2025-11-24 08:41:28,668 [wrapper] pandaids: 6895344002
[2025-11-24 03:41:28] 2025-11-24 08:41:28,708 [wrapper] cleanup supervisor_pilot 29536 2801
[2025-11-24 03:41:28] 2025-11-24 08:41:28,711 [wrapper] Test setup, not cleaning
[2025-11-24 03:41:28] 2025-11-24 08:41:28,713 [wrapper] apfmon messages muted
[2025-11-24 03:41:28] 2025-11-24 08:41:28,715 [wrapper] ==== wrapper stdout END ====
[2025-11-24 03:41:28] 2025-11-24 08:41:28,717 [wrapper] ==== wrapper stderr END ====
[2025-11-24 03:41:28]  *** Error codes and diagnostics ***
[2025-11-24 03:41:28]     "exeErrorCode": 0,
[2025-11-24 03:41:28]     "exeErrorDiag": "",
[2025-11-24 03:41:28]     "pilotErrorCode": 0,
[2025-11-24 03:41:28]     "pilotErrorDiag": "",
[2025-11-24 03:41:28]  *** Listing of results directory ***
[2025-11-24 03:41:28] total 1318004
[2025-11-24 03:41:28] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 11:22 queuedata.json
[2025-11-24 03:41:28] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 11:22 pilot3.tar.gz
[2025-11-24 03:41:28] -rwx------ 1 boincer umatlas     36292 Nov 22 11:23 runpilot2-wrapper.sh
[2025-11-24 03:41:28] -rw-r--r-- 1 boincer umatlas       100 Nov 23 08:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 03:41:28] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 08:48 run_atlas
[2025-11-24 03:41:28] -rw-r--r-- 1 boincer umatlas       105 Nov 23 08:48 job.xml
[2025-11-24 03:41:28] -rw-r--r-- 2 boincer umatlas 410903078 Nov 23 08:48 EVNT.47483658._001100.pool.root.1
[2025-11-24 03:41:28] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 08:48 start_atlas.sh
[2025-11-24 03:41:28] drwxrwx--x 2 boincer umatlas      4096 Nov 23 08:48 shared
[2025-11-24 03:41:28] -rw-r--r-- 2 boincer umatlas    590108 Nov 23 08:48 input.tar.gz
[2025-11-24 03:41:28] -rw-r--r-- 1 boincer umatlas         0 Nov 23 08:48 boinc_lockfile
[2025-11-24 03:41:28] -rw-r--r-- 1 boincer umatlas      2784 Nov 23 08:48 pandaJob.out
[2025-11-24 03:41:28] -rw------- 1 boincer umatlas        57 Nov 23 08:48 setup.sh.local
[2025-11-24 03:41:28] -rw------- 1 boincer umatlas    989785 Nov 23 08:48 agis_schedconf.cvmfs.json
[2025-11-24 03:41:28] drwx------ 5 boincer umatlas      4096 Nov 23 08:48 pilot3
[2025-11-24 03:41:28] -rw-r--r-- 1 boincer umatlas       532 Nov 24 03:29 boinc_task_state.xml
[2025-11-24 03:41:28] -rw-r--r-- 1 boincer umatlas      5954 Nov 24 03:39 init_data.xml
[2025-11-24 03:41:28] -rw------- 1 boincer umatlas 911506749 Nov 24 03:39 HITS.47556149._000865.pool.root.1
[2025-11-24 03:41:28] -rw------- 1 boincer umatlas      1068 Nov 24 03:40 memory_monitor_summary.json
[2025-11-24 03:41:28] -rw------- 1 boincer umatlas   1526164 Nov 24 03:40 agis_ddmendpoints.agis.ALL.json
[2025-11-24 03:41:28] -rw------- 1 boincer umatlas   2276243 Nov 24 03:40 log.47556149._000865.job.log.tgz.1
[2025-11-24 03:41:28] -rw------- 1 boincer umatlas      8663 Nov 24 03:40 heartbeat.json
[2025-11-24 03:41:28] -rw------- 1 boincer umatlas        95 Nov 24 03:41 pilot_heartbeat.json
[2025-11-24 03:41:28] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 03:41 boinc_mmap_file
[2025-11-24 03:41:28] -rw-r--r-- 1 boincer umatlas        29 Nov 24 03:41 wrapper_checkpoint.txt
[2025-11-24 03:41:28] -rw------- 1 boincer umatlas      4820 Nov 24 03:41 pilotlog.txt
[2025-11-24 03:41:28] -rw------- 1 boincer umatlas   9372969 Nov 24 03:41 log.47556149._000865.job.log.1
[2025-11-24 03:41:28] -rw------- 1 boincer umatlas       353 Nov 24 03:41 output.list
[2025-11-24 03:41:28] -rw-r--r-- 1 boincer umatlas       620 Nov 24 03:41 runtime_log
[2025-11-24 03:41:28] -rw------- 1 boincer umatlas  11673600 Nov 24 03:41 result.tar.gz
[2025-11-24 03:41:28] -rw-r--r-- 1 boincer umatlas      9343 Nov 24 03:41 runtime_log.err
[2025-11-24 03:41:28] -rw------- 1 boincer umatlas       668 Nov 24 03:41 qCRMDmiZ5g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmrBIKDmf2pA4m.diag
[2025-11-24 03:41:28] -rw-r--r-- 1 boincer umatlas     21286 Nov 24 03:41 stderr.txt
[2025-11-24 03:41:28] HITS file was successfully produced:
[2025-11-24 03:41:28] -rw------- 1 boincer umatlas 911506749 Nov 24 03:39 shared/HITS.pool.root.1
[2025-11-24 03:41:28]  *** Contents of shared directory: ***
[2025-11-24 03:41:28] total 1303420
[2025-11-24 03:41:28] -rw-r--r-- 2 boincer umatlas 410903078 Nov 23 08:48 ATLAS.root_0
[2025-11-24 03:41:28] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 08:48 start_atlas.sh
[2025-11-24 03:41:28] -rw-r--r-- 2 boincer umatlas    590108 Nov 23 08:48 input.tar.gz
[2025-11-24 03:41:28] -rw------- 1 boincer umatlas 911506749 Nov 24 03:39 HITS.pool.root.1
[2025-11-24 03:41:28] -rw------- 1 boincer umatlas  11673600 Nov 24 03:41 result.tar.gz
03:41:30 (31427): run_atlas exited; CPU time 527323.875456
03:41:30 (31427): called boinc_finish(0)

</stderr_txt>
]]>

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