Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:23:12 (6287): wrapper (7.7.26015): starting
08:23:12 (6287): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 08:23:12] Arguments: --nthreads 8
[2025-11-23 08:23:12] Threads: 8
[2025-11-23 08:23:12] Checking for CVMFS
[2025-11-23 08:23:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 08:23:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 08:23:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 08:23:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 08:23:13] 2.11.2.0 2910 43151 83560 153210 0 71 12907790 20275201 1 130560 0 5045205 99.526 2900661 28317 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 08:23:13] CVMFS is ok
[2025-11-23 08:23:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 08:23:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 08:23:13] Further information can be found at the LHC@home message board.
[2025-11-23 08:23:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 08:23:13] Checking for apptainer binary...
[2025-11-23 08:23:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 08:23:13] Running /usr/bin/apptainer --version
[2025-11-23 08:23:13] apptainer version 1.3.2-1.el7
[2025-11-23 08:23:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 08:23:15] c-204-13.aglt2.org
[2025-11-23 08:23:15] apptainer works
[2025-11-23 08:23:15] Set ATHENA_PROC_NUMBER=8
[2025-11-23 08:23:15] Set ATHENA_CORE_NUMBER=8
[2025-11-23 08:23:15] Starting ATLAS job with PandaID=6895343927
[2025-11-23 08:23:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 21:01:59]  *** The last 200 lines of the pilot log: ***
[2025-11-23 21:01:59] 2025-11-24 02:01:23,522 | INFO     | time since job start (45471s) is within the limit (172800.0s)
[2025-11-23 21:01:59] 2025-11-24 02:01:25,527 | INFO     | time since job start (45473s) is within the limit (172800.0s)
[2025-11-23 21:01:59] 2025-11-24 02:01:25,732 | INFO     | monitor loop #3333: job 0:6895343927 is in state 'finished'
[2025-11-23 21:01:59] 2025-11-24 02:01:25,732 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 21:01:59] 2025-11-24 02:01:26,840 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-23 21:01:59] 2025-11-24 02:01:26,845 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1828.875
[2025-11-23 21:01:59] 2025-11-24 02:01:26,848 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895343927/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 21:01:59] 2025-11-24 02:01:26,848 | INFO     | extracted standard info from prmon json
[2025-11-23 21:01:59] 2025-11-24 02:01:26,849 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 21:01:59] 2025-11-24 02:01:26,849 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 21:01:59] 2025-11-24 02:01:26,862 | INFO     | fitting pss+swap vs Time
[2025-11-23 21:01:59] 2025-11-24 02:01:26,863 | INFO     | sum of square deviations: 128217869449.48473
[2025-11-23 21:01:59] 2025-11-24 02:01:26,875 | INFO     | sum of deviations: 712453657885.3005
[2025-11-23 21:01:59] 2025-11-24 02:01:26,875 | INFO     | mean x: 1763926936.7221477
[2025-11-23 21:01:59] 2025-11-24 02:01:26,876 | INFO     | mean y: 3168801.412080537
[2025-11-23 21:01:59] 2025-11-24 02:01:26,876 | INFO     | intersect: -9798243464.334764
[2025-11-23 21:01:59] 2025-11-24 02:01:26,877 | INFO     | chi2: 6.073041464828142
[2025-11-23 21:01:59] 2025-11-24 02:01:26,878 | INFO     | sum of square deviations: 125653762201.8595
[2025-11-23 21:01:59] 2025-11-24 02:01:26,889 | INFO     | sum of deviations: 966467421478.3027
[2025-11-23 21:01:59] 2025-11-24 02:01:26,889 | INFO     | mean x: 1763926784.227027
[2025-11-23 21:01:59] 2025-11-24 02:01:26,890 | INFO     | mean y: 3183902.6648648647
[2025-11-23 21:01:59] 2025-11-24 02:01:26,890 | INFO     | intersect: -13564080148.607456
[2025-11-23 21:01:59] 2025-11-24 02:01:26,891 | INFO     | chi2: 3.3426290848054823
[2025-11-23 21:01:59] 2025-11-24 02:01:26,891 | INFO     | current chi2=3.3426290848054823 (change=44.95955438203033 %)
[2025-11-23 21:01:59] 2025-11-24 02:01:26,892 | INFO     | sum of square deviations: 123124074204.1991
[2025-11-23 21:01:59] 2025-11-24 02:01:26,903 | INFO     | sum of deviations: 1088197991484.0131
[2025-11-23 21:01:59] 2025-11-24 02:01:26,903 | INFO     | mean x: 1763926631.7319727
[2025-11-23 21:01:59] 2025-11-24 02:01:26,904 | INFO     | mean y: 3191233.680272109
[2025-11-23 21:01:59] 2025-11-24 02:01:26,904 | INFO     | intersect: -15586785220.41622
[2025-11-23 21:01:59] 2025-11-24 02:01:26,904 | INFO     | chi2: 2.607172690147351
[2025-11-23 21:01:59] 2025-11-24 02:01:26,905 | INFO     | current chi2=2.607172690147351 (change=22.002333372891407 %)
[2025-11-23 21:01:59] 2025-11-24 02:01:26,905 | INFO     | right removable region: 734
[2025-11-23 21:01:59] 2025-11-24 02:01:26,906 | INFO     | sum of square deviations: 125653434021.85951
[2025-11-23 21:01:59] 2025-11-24 02:01:26,918 | INFO     | sum of deviations: 483687767515.73035
[2025-11-23 21:01:59] 2025-11-24 02:01:26,918 | INFO     | mean x: 1763927089.227027
[2025-11-23 21:01:59] 2025-11-24 02:01:26,918 | INFO     | mean y: 3182382.5135135134
[2025-11-23 21:01:59] 2025-11-24 02:01:26,918 | INFO     | intersect: -6786842597.626022
[2025-11-23 21:01:59] 2025-11-24 02:01:26,919 | INFO     | chi2: 3.6821357204674747
[2025-11-23 21:01:59] 2025-11-24 02:01:26,919 | INFO     | current chi2=3.6821357204674747 (change=39.36916548664346 %)
[2025-11-23 21:01:59] 2025-11-24 02:01:26,920 | INFO     | sum of square deviations: 123123508369.12125
[2025-11-23 21:01:59] 2025-11-24 02:01:26,931 | INFO     | sum of deviations: 440771244614.81647
[2025-11-23 21:01:59] 2025-11-24 02:01:26,932 | INFO     | mean x: 1763927241.7292516
[2025-11-23 21:01:59] 2025-11-24 02:01:26,932 | INFO     | mean y: 3184967.93877551
[2025-11-23 21:01:59] 2025-11-24 02:01:26,932 | INFO     | intersect: -6311518178.889135
[2025-11-23 21:01:59] 2025-11-24 02:01:26,933 | INFO     | chi2: 3.642939820642204
[2025-11-23 21:01:59] 2025-11-24 02:01:26,933 | INFO     | current chi2=3.642939820642204 (change=1.0644881884010076 %)
[2025-11-23 21:01:59] 2025-11-24 02:01:26,933 | INFO     | left removable region: 20
[2025-11-23 21:01:59] 2025-11-24 02:01:26,934 | INFO     | sum of square deviations: 112869037023.08275
[2025-11-23 21:01:59] 2025-11-24 02:01:26,945 | INFO     | sum of deviations: 773932364613.2961
[2025-11-23 21:01:59] 2025-11-24 02:01:26,945 | INFO     | mean x: 1763927211.242297
[2025-11-23 21:01:59] 2025-11-24 02:01:26,945 | INFO     | mean y: 3212017.9173669466
[2025-11-23 21:01:59] 2025-11-24 02:01:26,945 | INFO     | intersect: -12091870864.054066
[2025-11-23 21:01:59] 2025-11-24 02:01:26,946 | INFO     | chi2: 0.09991015306895343
[2025-11-23 21:01:59] 2025-11-24 02:01:26,946 | INFO     | current memory leak: 6.86 B/s (using 714 data points, chi2=0.10)
[2025-11-23 21:01:59] 2025-11-24 02:01:26,947 | INFO     | could have reported an average CPU frequency of 2182 MHz (28 samples)
[2025-11-23 21:01:59] 2025-11-24 02:01:26,947 | INFO     | ..............................
[2025-11-23 21:01:59] 2025-11-24 02:01:26,947 | INFO     | . Timing measurements:
[2025-11-23 21:01:59] 2025-11-24 02:01:26,947 | INFO     | . get job = 0 s
[2025-11-23 21:01:59] 2025-11-24 02:01:26,948 | INFO     | . initial setup = 2 s
[2025-11-23 21:01:59] 2025-11-24 02:01:26,948 | INFO     | . payload setup = 9 s
[2025-11-23 21:01:59] 2025-11-24 02:01:26,948 | INFO     | . stage-in = 0 s
[2025-11-23 21:01:59] 2025-11-24 02:01:26,948 | INFO     | . payload execution = 45433 s
[2025-11-23 21:01:59] 2025-11-24 02:01:26,948 | INFO     | . stage-out = 3 s
[2025-11-23 21:01:59] 2025-11-24 02:01:26,948 | INFO     | . log creation = 0 s
[2025-11-23 21:01:59] 2025-11-24 02:01:26,948 | INFO     | ..............................
[2025-11-23 21:01:59] 2025-11-24 02:01:27,042 | INFO     | 
[2025-11-23 21:01:59] 2025-11-24 02:01:27,042 | INFO     | job summary report
[2025-11-23 21:01:59] 2025-11-24 02:01:27,043 | INFO     | --------------------------------------------------
[2025-11-23 21:01:59] 2025-11-24 02:01:27,043 | INFO     | PanDA job id: 6895343927
[2025-11-23 21:01:59] 2025-11-24 02:01:27,043 | INFO     | task id: 47556149
[2025-11-23 21:01:59] 2025-11-24 02:01:27,043 | INFO     | errors: (none)
[2025-11-23 21:01:59] 2025-11-24 02:01:27,043 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 21:01:59] 2025-11-24 02:01:27,043 | INFO     | pilot state: finished 
[2025-11-23 21:01:59] 2025-11-24 02:01:27,043 | INFO     | transexitcode: 0
[2025-11-23 21:01:59] 2025-11-24 02:01:27,044 | INFO     | exeerrorcode: 0
[2025-11-23 21:01:59] 2025-11-24 02:01:27,044 | INFO     | exeerrordiag: 
[2025-11-23 21:01:59] 2025-11-24 02:01:27,044 | INFO     | exitcode: 0
[2025-11-23 21:01:59] 2025-11-24 02:01:27,044 | INFO     | exitmsg: OK
[2025-11-23 21:01:59] 2025-11-24 02:01:27,044 | INFO     | cpuconsumptiontime: 350833 s
[2025-11-23 21:01:59] 2025-11-24 02:01:27,044 | INFO     | nevents: 1000
[2025-11-23 21:01:59] 2025-11-24 02:01:27,045 | INFO     | neventsw: 0
[2025-11-23 21:01:59] 2025-11-24 02:01:27,045 | INFO     | pid: 16448
[2025-11-23 21:01:59] 2025-11-24 02:01:27,045 | INFO     | pgrp: 16448
[2025-11-23 21:01:59] 2025-11-24 02:01:27,045 | INFO     | corecount: 8
[2025-11-23 21:01:59] 2025-11-24 02:01:27,045 | INFO     | event service: False
[2025-11-23 21:01:59] 2025-11-24 02:01:27,045 | INFO     | sizes: {0: 2298804, 1: 2298804, 6: 2299094, 11: 2299122, 45446: 2345187, 45450: 2354365, 45457: 2354555}
[2025-11-23 21:01:59] 2025-11-24 02:01:27,046 | INFO     | --------------------------------------------------
[2025-11-23 21:01:59] 2025-11-24 02:01:27,046 | INFO     | 
[2025-11-23 21:01:59] 2025-11-24 02:01:27,046 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-23 21:01:59] 2025-11-24 02:01:27,074 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 21:01:59] 2025-11-24 02:01:27,075 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 21:01:59] 2025-11-24 02:01:27,075 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 21:01:59] 2025-11-24 02:01:27,075 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 21:01:59] 2025-11-24 02:01:27,076 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 21:01:59] 2025-11-24 02:01:27,076 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 21:01:59] 2025-11-24 02:01:27,076 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 21:01:59] 2025-11-24 02:01:27,076 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 21:01:59] 2025-11-24 02:01:27,076 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 21:01:59] 2025-11-24 02:01:27,077 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 21:01:59] 2025-11-24 02:01:27,077 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 21:01:59] 2025-11-24 02:01:27,077 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 21:01:59] 2025-11-24 02:01:27,077 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 21:01:59] 2025-11-24 02:01:27,078 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 21:01:59] 2025-11-24 02:01:27,078 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 21:01:59] 2025-11-24 02:01:27,078 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 21:01:59] 2025-11-24 02:01:27,078 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 21:01:59] 2025-11-24 02:01:27,078 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 21:01:59] 2025-11-24 02:01:27,079 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 21:01:59] 2025-11-24 02:01:27,079 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 21:01:59] 2025-11-24 02:01:27,079 | INFO     | job 6895343927 has completed (purged errors)
[2025-11-23 21:01:59] 2025-11-24 02:01:27,079 | INFO     | overall cleanup function is called
[2025-11-23 21:01:59] 2025-11-24 02:01:28,098 | INFO     | --- collectZombieJob: --- 10, [16448]
[2025-11-23 21:01:59] 2025-11-24 02:01:28,098 | INFO     | zombie collector waiting for pid 16448
[2025-11-23 21:01:59] 2025-11-24 02:01:28,098 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 21:01:59] 2025-11-24 02:01:28,099 | INFO     | collected zombie processes
[2025-11-23 21:01:59] 2025-11-24 02:01:28,099 | INFO     | will attempt to kill all subprocesses of pid=16448
[2025-11-23 21:01:59] 2025-11-24 02:01:28,217 | INFO     | process IDs to be killed: [16448] (in reverse order)
[2025-11-23 21:01:59] 2025-11-24 02:01:28,272 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 21:01:59] 2025-11-24 02:01:28,273 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 21:01:59] 2025-11-24 02:01:28,279 | INFO     | did not find any defunct processes belonging to 16448
[2025-11-23 21:01:59] 2025-11-24 02:01:28,283 | INFO     | did not find any defunct processes belonging to 16448
[2025-11-23 21:01:59] 2025-11-24 02:01:28,287 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 21:01:59] 2025-11-24 02:01:28,287 | INFO     | ready for new job
[2025-11-23 21:01:59] 2025-11-24 02:01:28,288 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 21:01:59] 2025-11-24 02:01:28,293 | INFO     | ***************************************
[2025-11-23 21:01:59] 2025-11-24 02:01:28,293 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 21:01:59] 2025-11-24 02:01:28,293 | INFO     | ***************************************
[2025-11-23 21:01:59] 2025-11-24 02:01:28,294 | INFO     | 
[2025-11-23 21:01:59] 2025-11-24 02:01:28,294 | INFO     | architecture information:
[2025-11-23 21:01:59] 2025-11-24 02:01:28,295 | INFO     | executing command: cat /etc/os-release
[2025-11-23 21:01:59] 2025-11-24 02:01:28,314 | INFO     | cat /etc/os-release:
[2025-11-23 21:01:59] NAME="CentOS Linux"
[2025-11-23 21:01:59] VERSION="7 (Core)"
[2025-11-23 21:01:59] ID="centos"
[2025-11-23 21:01:59] ID_LIKE="rhel fedora"
[2025-11-23 21:01:59] VERSION_ID="7"
[2025-11-23 21:01:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 21:01:59] ANSI_COLOR="0;31"
[2025-11-23 21:01:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 21:01:59] HOME_URL="https://www.centos.org/"
[2025-11-23 21:01:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 21:01:59] 
[2025-11-23 21:01:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 21:01:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 21:01:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 21:01:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 21:01:59] 
[2025-11-23 21:01:59] 2025-11-24 02:01:28,315 | INFO     | ***************************************
[2025-11-23 21:01:59] 2025-11-24 02:01:28,818 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-23 21:01:59] 2025-11-24 02:01:28,841 | INFO     | sufficient remaining disk space (17451450368 B)
[2025-11-23 21:01:59] 2025-11-24 02:01:28,842 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 21:01:59] 2025-11-24 02:01:28,842 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 21:01:59] 2025-11-24 02:01:28,842 | INFO     | update_server=False
[2025-11-23 21:01:59] 2025-11-24 02:01:28,843 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 21:01:59] 2025-11-24 02:01:28,843 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 21:01:59] 2025-11-24 02:01:28,844 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 21:01:59] 2025-11-24 02:01:29,240 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 21:01:59] 2025-11-24 02:01:29,241 | INFO     | aborting loop
[2025-11-23 21:01:59] 2025-11-24 02:01:29,587 | INFO     | all data control threads have been joined
[2025-11-23 21:01:59] 2025-11-24 02:01:29,654 | INFO     | all payload control threads have been joined
[2025-11-23 21:01:59] 2025-11-24 02:01:29,848 | INFO     | [job] retrieve thread has finished
[2025-11-23 21:01:59] 2025-11-24 02:01:29,850 | INFO     | [job] queue monitor thread has finished
[2025-11-23 21:01:59] 2025-11-24 02:01:29,948 | INFO     | [payload] validate_post thread has finished
[2025-11-23 21:01:59] 2025-11-24 02:01:30,011 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 21:01:59] 2025-11-24 02:01:30,182 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 21:01:59] 2025-11-24 02:01:30,245 | INFO     | [job] job monitor thread has finished
[2025-11-23 21:01:59] 2025-11-24 02:01:30,261 | INFO     | all job control threads have been joined
[2025-11-23 21:01:59] 2025-11-24 02:01:30,268 | INFO     | [data] copytool_in thread has finished
[2025-11-23 21:01:59] 2025-11-24 02:01:30,402 | INFO     | [job] validate thread has finished
[2025-11-23 21:01:59] 2025-11-24 02:01:30,518 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 21:01:59] 2025-11-24 02:01:30,592 | INFO     | [data] control thread has finished
[2025-11-23 21:01:59] 2025-11-24 02:01:30,626 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 21:01:59] 2025-11-24 02:01:30,659 | INFO     | [payload] control thread has finished
[2025-11-23 21:01:59] 2025-11-24 02:01:30,849 | INFO     | [data] copytool_out thread has finished
[2025-11-23 21:01:59] 2025-11-24 02:01:30,861 | INFO     | [payload] failed_post thread has finished
[2025-11-23 21:01:59] 2025-11-24 02:01:30,926 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 21:01:59] 2025-11-24 02:01:31,266 | INFO     | [job] control thread has finished
[2025-11-23 21:01:59] 2025-11-24 02:01:34,631 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 21:01:59] 2025-11-24 02:01:47,472 | INFO     | [monitor] cgroup control has ended
[2025-11-23 21:01:59] 2025-11-24 02:01:49,024 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140196163692352)>', '<ExcThread(monitor, started 140195508774656)>']
[2025-11-23 21:01:59] 2025-11-24 02:01:54,047 | INFO     | all workflow threads have been joined
[2025-11-23 21:01:59] 2025-11-24 02:01:54,047 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 21:01:59] 2025-11-24 02:01:54,048 | INFO     | traces error code: 0
[2025-11-23 21:01:59] 2025-11-24 02:01:54,048 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 21:01:59] 2025-11-24 02:01:58,737 | INFO     | PID=10051 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 21:01:59] 2025-11-24 02:01:58,737 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 21:01:59] 2025-11-24 02:01:58,738 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 21:01:59] 2025-11-24 02:01:58,738 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 21:01:59] 2025-11-24 02:01:58,738 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 21:01:59] 2025-11-24 02:01:58,738 | INFO     | [monitor] control thread has ended
[2025-11-23 21:01:59] 2025-11-24 02:01:58,867 [wrapper] ==== pilot stdout END ====
[2025-11-23 21:01:59] 2025-11-24 02:01:58,872 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 21:01:59] 2025-11-24 02:01:58,877 [wrapper] pilotpid: 10051
[2025-11-23 21:01:59] 2025-11-24 02:01:58,882 [wrapper] Pilot exit status: 0
[2025-11-23 21:01:59] 2025-11-24 02:01:58,900 [wrapper] pandaids: 6895343927
[2025-11-23 21:01:59] 2025-11-24 02:01:58,945 [wrapper] cleanup supervisor_pilot 26373 10052
[2025-11-23 21:01:59] 2025-11-24 02:01:58,950 [wrapper] Test setup, not cleaning
[2025-11-23 21:01:59] 2025-11-24 02:01:58,955 [wrapper] apfmon messages muted
[2025-11-23 21:01:59] 2025-11-24 02:01:58,960 [wrapper] ==== wrapper stdout END ====
[2025-11-23 21:01:59] 2025-11-24 02:01:58,965 [wrapper] ==== wrapper stderr END ====
[2025-11-23 21:01:59]  *** Error codes and diagnostics ***
[2025-11-23 21:01:59]     "exeErrorCode": 0,
[2025-11-23 21:01:59]     "exeErrorDiag": "",
[2025-11-23 21:01:59]     "pilotErrorCode": 0,
[2025-11-23 21:01:59]     "pilotErrorDiag": "",
[2025-11-23 21:01:59]  *** Listing of results directory ***
[2025-11-23 21:01:59] total 1328200
[2025-11-23 21:01:59] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 10:48 pilot3.tar.gz
[2025-11-23 21:01:59] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 11:07 queuedata.json
[2025-11-23 21:01:59] -rwx------ 1 boincer umatlas     36292 Nov 22 11:08 runpilot2-wrapper.sh
[2025-11-23 21:01:59] -rw-r--r-- 1 boincer umatlas       100 Nov 23 08:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 21:01:59] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 08:23 run_atlas
[2025-11-23 21:01:59] -rw-r--r-- 1 boincer umatlas       105 Nov 23 08:23 job.xml
[2025-11-23 21:01:59] -rw-r--r-- 2 boincer umatlas 411633333 Nov 23 08:23 EVNT.47483658._001099.pool.root.1
[2025-11-23 21:01:59] -rw-r--r-- 2 boincer umatlas    590103 Nov 23 08:23 input.tar.gz
[2025-11-23 21:01:59] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 08:23 start_atlas.sh
[2025-11-23 21:01:59] drwxrwx--x 2 boincer umatlas      4096 Nov 23 08:23 shared
[2025-11-23 21:01:59] -rw-r--r-- 1 boincer umatlas         0 Nov 23 08:23 boinc_lockfile
[2025-11-23 21:01:59] -rw-r--r-- 1 boincer umatlas      2784 Nov 23 08:23 pandaJob.out
[2025-11-23 21:01:59] -rw------- 1 boincer umatlas        57 Nov 23 08:23 setup.sh.local
[2025-11-23 21:01:59] -rw------- 1 boincer umatlas    989785 Nov 23 08:23 agis_schedconf.cvmfs.json
[2025-11-23 21:01:59] drwx------ 5 boincer umatlas      4096 Nov 23 08:23 pilot3
[2025-11-23 21:01:59] -rw-r--r-- 1 boincer umatlas       533 Nov 23 20:46 boinc_task_state.xml
[2025-11-23 21:01:59] -rw------- 1 boincer umatlas 928049289 Nov 23 21:00 HITS.47556149._000856.pool.root.1
[2025-11-23 21:01:59] -rw------- 1 boincer umatlas        95 Nov 23 21:01 pilot_heartbeat.json
[2025-11-23 21:01:59] -rw------- 1 boincer umatlas      1063 Nov 23 21:01 memory_monitor_summary.json
[2025-11-23 21:01:59] -rw------- 1 boincer umatlas   1526164 Nov 23 21:01 agis_ddmendpoints.agis.ALL.json
[2025-11-23 21:01:59] -rw------- 1 boincer umatlas   1990023 Nov 23 21:01 log.47556149._000856.job.log.tgz.1
[2025-11-23 21:01:59] -rw------- 1 boincer umatlas      8660 Nov 23 21:01 heartbeat.json
[2025-11-23 21:01:59] -rw-r--r-- 1 boincer umatlas      5912 Nov 23 21:01 init_data.xml
[2025-11-23 21:01:59] -rw-r--r-- 1 boincer umatlas        29 Nov 23 21:01 wrapper_checkpoint.txt
[2025-11-23 21:01:59] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 21:01 boinc_mmap_file
[2025-11-23 21:01:59] -rw------- 1 boincer umatlas       745 Nov 23 21:01 pilotlog.txt
[2025-11-23 21:01:59] -rw------- 1 boincer umatlas   6247591 Nov 23 21:01 log.47556149._000856.job.log.1
[2025-11-23 21:01:59] -rw------- 1 boincer umatlas       353 Nov 23 21:01 output.list
[2025-11-23 21:01:59] -rw-r--r-- 1 boincer umatlas       620 Nov 23 21:01 runtime_log
[2025-11-23 21:01:59] -rw------- 1 boincer umatlas   8253440 Nov 23 21:01 result.tar.gz
[2025-11-23 21:01:59] -rw-r--r-- 1 boincer umatlas      9343 Nov 23 21:01 runtime_log.err
[2025-11-23 21:01:59] -rw------- 1 boincer umatlas       668 Nov 23 21:01 jICODmiK5g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmrFKKDmHQ9vxn.diag
[2025-11-23 21:01:59] -rw-r--r-- 1 boincer umatlas     21295 Nov 23 21:01 stderr.txt
[2025-11-23 21:01:59] HITS file was successfully produced:
[2025-11-23 21:01:59] -rw------- 1 boincer umatlas 928049289 Nov 23 21:00 shared/HITS.pool.root.1
[2025-11-23 21:01:59]  *** Contents of shared directory: ***
[2025-11-23 21:01:59] total 1316952
[2025-11-23 21:01:59] -rw-r--r-- 2 boincer umatlas 411633333 Nov 23 08:23 ATLAS.root_0
[2025-11-23 21:01:59] -rw-r--r-- 2 boincer umatlas    590103 Nov 23 08:23 input.tar.gz
[2025-11-23 21:01:59] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 08:23 start_atlas.sh
[2025-11-23 21:01:59] -rw------- 1 boincer umatlas 928049289 Nov 23 21:00 HITS.pool.root.1
[2025-11-23 21:01:59] -rw------- 1 boincer umatlas   8253440 Nov 23 21:01 result.tar.gz
21:02:01 (6287): run_atlas exited; CPU time 348713.691613
21:02:01 (6287): called boinc_finish(0)

</stderr_txt>
]]>

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