Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:35 (3162140): wrapper (7.7.26015): starting
00:04:35 (3162140): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 00:04:35] Arguments: --nthreads 8
[2025-11-24 00:04:35] Threads: 8
[2025-11-24 00:04:35] Checking for CVMFS
[2025-11-24 00:04:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:04:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:04:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:04:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:04:36] 2.13.2.0 6513 30518 432904 153233 3 384 32706423 40960001 16367 16776704 0 75198039 99.621 73005183 37722 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 00:04:36] CVMFS is ok
[2025-11-24 00:04:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:04:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:04:36] Further information can be found at the LHC@home message board.
[2025-11-24 00:04:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:04:36] Checking for apptainer binary...
[2025-11-24 00:04:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:04:36] Running /usr/bin/apptainer --version
[2025-11-24 00:04:36] apptainer version 1.4.4-1.el9
[2025-11-24 00:04:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:04:38] c-206-38.aglt2.org
[2025-11-24 00:04:38] apptainer works
[2025-11-24 00:04:38] Set ATHENA_PROC_NUMBER=8
[2025-11-24 00:04:38] Set ATHENA_CORE_NUMBER=8
[2025-11-24 00:04:38] Starting ATLAS job with PandaID=6893856363
[2025-11-24 00:04:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 19:53:23]  *** The last 200 lines of the pilot log: ***
[2025-11-24 19:53:23] 2025-11-25 00:52:25,737 | INFO     | monitor loop #4261: job 0:6893856363 is in state 'finished'
[2025-11-24 19:53:23] 2025-11-25 00:52:25,737 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 19:53:23] 2025-11-25 00:52:26,746 | INFO     | time since job start (71251s) is within the limit (172800.0s)
[2025-11-24 19:53:23] 2025-11-25 00:52:28,243 | INFO     | monitor loop #4262: job 0:6893856363 is in state 'finished'
[2025-11-24 19:53:23] 2025-11-25 00:52:28,243 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 19:53:23] 2025-11-25 00:52:28,759 | INFO     | time since job start (71253s) is within the limit (172800.0s)
[2025-11-24 19:53:23] 2025-11-25 00:52:30,750 | INFO     | monitor loop #4263: job 0:6893856363 is in state 'finished'
[2025-11-24 19:53:23] 2025-11-25 00:52:30,750 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 19:53:23] 2025-11-25 00:52:30,769 | INFO     | time since job start (71255s) is within the limit (172800.0s)
[2025-11-24 19:53:23] 2025-11-25 00:52:32,778 | INFO     | time since job start (71257s) is within the limit (172800.0s)
[2025-11-24 19:53:23] 2025-11-25 00:52:32,778 | INFO     | 71259s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-24 19:53:23] 2025-11-25 00:52:33,254 | INFO     | monitor loop #4264: job 0:6893856363 is in state 'finished'
[2025-11-24 19:53:23] 2025-11-25 00:52:33,256 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 19:53:23] 2025-11-25 00:52:34,784 | INFO     | time since job start (71259s) is within the limit (172800.0s)
[2025-11-24 19:53:23] 2025-11-25 00:52:35,762 | INFO     | monitor loop #4265: job 0:6893856363 is in state 'finished'
[2025-11-24 19:53:23] 2025-11-25 00:52:35,762 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 19:53:23] 2025-11-25 00:52:36,376 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 19:53:23] 2025-11-25 00:52:36,382 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3276.075765625
[2025-11-24 19:53:23] 2025-11-25 00:52:36,393 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6893856363/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 19:53:23] 2025-11-25 00:52:36,398 | INFO     | extracted standard info from prmon json
[2025-11-24 19:53:23] 2025-11-25 00:52:36,398 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 19:53:23] 2025-11-25 00:52:36,398 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 19:53:23] 2025-11-25 00:52:36,422 | INFO     | fitting pss+swap vs Time
[2025-11-24 19:53:23] 2025-11-25 00:52:36,423 | INFO     | sum of square deviations: 492788925841.74445
[2025-11-24 19:53:23] 2025-11-25 00:52:36,454 | INFO     | sum of deviations: -3044457706223.254
[2025-11-24 19:53:23] 2025-11-25 00:52:36,454 | INFO     | mean x: 1763996300.5021422
[2025-11-24 19:53:23] 2025-11-25 00:52:36,454 | INFO     | mean y: 2722079.701799486
[2025-11-24 19:53:23] 2025-11-25 00:52:36,455 | INFO     | intersect: 10900718867.352272
[2025-11-24 19:53:23] 2025-11-25 00:52:36,456 | INFO     | chi2: 74.75186614276718
[2025-11-24 19:53:23] 2025-11-25 00:52:36,457 | INFO     | sum of square deviations: 486482433032.806
[2025-11-24 19:53:23] 2025-11-25 00:52:36,503 | INFO     | sum of deviations: -2613553654547.7075
[2025-11-24 19:53:23] 2025-11-25 00:52:36,504 | INFO     | mean x: 1763996148.0129087
[2025-11-24 19:53:23] 2025-11-25 00:52:36,504 | INFO     | mean y: 2732497.91394148
[2025-11-24 19:53:23] 2025-11-25 00:52:36,504 | INFO     | intersect: 9479536316.925266
[2025-11-24 19:53:23] 2025-11-25 00:52:36,505 | INFO     | chi2: 69.31669952201811
[2025-11-24 19:53:23] 2025-11-25 00:52:36,505 | INFO     | current chi2=69.31669952201811 (change=7.270944394041681 %)
[2025-11-24 19:53:23] 2025-11-25 00:52:36,513 | INFO     | right removable region: 1161
[2025-11-24 19:53:23] 2025-11-25 00:52:36,514 | INFO     | sum of square deviations: 486480864915.8758
[2025-11-24 19:53:23] 2025-11-25 00:52:36,555 | INFO     | sum of deviations: -3302443805281.8027
[2025-11-24 19:53:23] 2025-11-25 00:52:36,555 | INFO     | mean x: 1763996453.010327
[2025-11-24 19:53:23] 2025-11-25 00:52:36,555 | INFO     | mean y: 2728307.900172117
[2025-11-24 19:53:23] 2025-11-25 00:52:36,555 | INFO     | intersect: 11977503841.549158
[2025-11-24 19:53:23] 2025-11-25 00:52:36,556 | INFO     | chi2: 73.07802761560664
[2025-11-24 19:53:23] 2025-11-25 00:52:36,556 | INFO     | current chi2=73.07802761560664 (change=2.239192964044146 %)
[2025-11-24 19:53:23] 2025-11-25 00:52:36,557 | INFO     | left removable region: 10
[2025-11-24 19:53:23] 2025-11-25 00:52:36,558 | INFO     | sum of square deviations: 472795918713.3102
[2025-11-24 19:53:23] 2025-11-25 00:52:36,605 | INFO     | sum of deviations: -2873934739212.177
[2025-11-24 19:53:23] 2025-11-25 00:52:36,605 | INFO     | mean x: 1763996422.5195482
[2025-11-24 19:53:23] 2025-11-25 00:52:36,605 | INFO     | mean y: 2742273.4300608165
[2025-11-24 19:53:23] 2025-11-25 00:52:36,605 | INFO     | intersect: 10725361479.4537
[2025-11-24 19:53:23] 2025-11-25 00:52:36,606 | INFO     | chi2: 66.82548451814498
[2025-11-24 19:53:23] 2025-11-25 00:52:36,606 | INFO     | current memory leak: -6.08 B/s (using 1151 data points, chi2=66.83)
[2025-11-24 19:53:23] 2025-11-25 00:52:36,607 | INFO     | could have reported an average CPU frequency of 3268 MHz (42 samples)
[2025-11-24 19:53:23] 2025-11-25 00:52:36,607 | INFO     | ..............................
[2025-11-24 19:53:23] 2025-11-25 00:52:36,607 | INFO     | . Timing measurements:
[2025-11-24 19:53:23] 2025-11-25 00:52:36,607 | INFO     | . get job = 0 s
[2025-11-24 19:53:23] 2025-11-25 00:52:36,607 | INFO     | . initial setup = 2 s
[2025-11-24 19:53:23] 2025-11-25 00:52:36,607 | INFO     | . payload setup = 10 s
[2025-11-24 19:53:23] 2025-11-25 00:52:36,608 | INFO     | . stage-in = 0 s
[2025-11-24 19:53:23] 2025-11-25 00:52:36,608 | INFO     | . payload execution = 71178 s
[2025-11-24 19:53:23] 2025-11-25 00:52:36,608 | INFO     | . stage-out = 7 s
[2025-11-24 19:53:23] 2025-11-25 00:52:36,608 | INFO     | . log creation = 3 s
[2025-11-24 19:53:23] 2025-11-25 00:52:36,608 | INFO     | ..............................
[2025-11-24 19:53:23] 2025-11-25 00:52:36,802 | INFO     | time since job start (71261s) is within the limit (172800.0s)
[2025-11-24 19:53:23] 2025-11-25 00:52:36,804 | INFO     | 
[2025-11-24 19:53:23] 2025-11-25 00:52:36,804 | INFO     | job summary report
[2025-11-24 19:53:23] 2025-11-25 00:52:36,804 | INFO     | --------------------------------------------------
[2025-11-24 19:53:23] 2025-11-25 00:52:36,804 | INFO     | PanDA job id: 6893856363
[2025-11-24 19:53:23] 2025-11-25 00:52:36,804 | INFO     | task id: 47523449
[2025-11-24 19:53:23] 2025-11-25 00:52:36,804 | INFO     | errors: (none)
[2025-11-24 19:53:23] 2025-11-25 00:52:36,804 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 19:53:23] 2025-11-25 00:52:36,804 | INFO     | pilot state: finished 
[2025-11-24 19:53:23] 2025-11-25 00:52:36,804 | INFO     | transexitcode: 0
[2025-11-24 19:53:23] 2025-11-25 00:52:36,804 | INFO     | exeerrorcode: 0
[2025-11-24 19:53:23] 2025-11-25 00:52:36,804 | INFO     | exeerrordiag: 
[2025-11-24 19:53:23] 2025-11-25 00:52:36,804 | INFO     | exitcode: 0
[2025-11-24 19:53:23] 2025-11-25 00:52:36,805 | INFO     | exitmsg: OK
[2025-11-24 19:53:23] 2025-11-25 00:52:36,805 | INFO     | cpuconsumptiontime: 199394 s
[2025-11-24 19:53:23] 2025-11-25 00:52:36,805 | INFO     | nevents: 1000
[2025-11-24 19:53:23] 2025-11-25 00:52:36,805 | INFO     | neventsw: 0
[2025-11-24 19:53:23] 2025-11-25 00:52:36,805 | INFO     | pid: 3192446
[2025-11-24 19:53:23] 2025-11-25 00:52:36,805 | INFO     | pgrp: 3192446
[2025-11-24 19:53:23] 2025-11-25 00:52:36,805 | INFO     | corecount: 8
[2025-11-24 19:53:23] 2025-11-25 00:52:36,805 | INFO     | event service: False
[2025-11-24 19:53:23] 2025-11-25 00:52:36,805 | INFO     | sizes: {0: 2298807, 1: 2298807, 9: 2299097, 11: 2299125, 71193: 2357660, 71201: 2367445, 71202: 2367629, 71243: 2367875}
[2025-11-24 19:53:23] 2025-11-25 00:52:36,805 | INFO     | --------------------------------------------------
[2025-11-24 19:53:23] 2025-11-25 00:52:36,805 | INFO     | 
[2025-11-24 19:53:23] 2025-11-25 00:52:36,805 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-24 19:53:23] 2025-11-25 00:52:37,014 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 19:53:23] 2025-11-25 00:52:37,014 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 19:53:23] 2025-11-25 00:52:37,014 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 19:53:23] 2025-11-25 00:52:37,014 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 19:53:23] 2025-11-25 00:52:37,014 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 19:53:23] 2025-11-25 00:52:37,014 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 19:53:23] 2025-11-25 00:52:37,014 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 19:53:23] 2025-11-25 00:52:37,014 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 19:53:23] 2025-11-25 00:52:37,015 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 19:53:23] 2025-11-25 00:52:37,015 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 19:53:23] 2025-11-25 00:52:37,015 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 19:53:23] 2025-11-25 00:52:37,015 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 19:53:23] 2025-11-25 00:52:37,015 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 19:53:23] 2025-11-25 00:52:37,015 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 19:53:23] 2025-11-25 00:52:37,015 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 19:53:23] 2025-11-25 00:52:37,015 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 19:53:23] 2025-11-25 00:52:37,015 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 19:53:23] 2025-11-25 00:52:37,015 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 19:53:23] 2025-11-25 00:52:37,015 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 19:53:23] 2025-11-25 00:52:37,015 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 19:53:23] 2025-11-25 00:52:37,016 | INFO     | job 6893856363 has completed (purged errors)
[2025-11-24 19:53:23] 2025-11-25 00:52:37,016 | INFO     | overall cleanup function is called
[2025-11-24 19:53:23] 2025-11-25 00:52:38,055 | INFO     | --- collectZombieJob: --- 10, [3192446]
[2025-11-24 19:53:23] 2025-11-25 00:52:38,055 | INFO     | zombie collector waiting for pid 3192446
[2025-11-24 19:53:23] 2025-11-25 00:52:38,055 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 19:53:23] 2025-11-25 00:52:38,055 | INFO     | collected zombie processes
[2025-11-24 19:53:23] 2025-11-25 00:52:38,055 | INFO     | will attempt to kill all subprocesses of pid=3192446
[2025-11-24 19:53:23] 2025-11-25 00:52:38,497 | INFO     | process IDs to be killed: [3192446] (in reverse order)
[2025-11-24 19:53:23] 2025-11-25 00:52:39,053 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 19:53:23] 2025-11-25 00:52:39,053 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 19:53:23] 2025-11-25 00:52:39,081 | INFO     | did not find any defunct processes belonging to 3192446
[2025-11-24 19:53:23] 2025-11-25 00:52:39,104 | INFO     | did not find any defunct processes belonging to 3192446
[2025-11-24 19:53:23] 2025-11-25 00:52:39,110 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 19:53:23] 2025-11-25 00:52:39,110 | INFO     | ready for new job
[2025-11-24 19:53:23] 2025-11-25 00:52:39,110 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 19:53:23] 2025-11-25 00:52:39,120 | INFO     | ***************************************
[2025-11-24 19:53:23] 2025-11-25 00:52:39,120 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 19:53:23] 2025-11-25 00:52:39,120 | INFO     | ***************************************
[2025-11-24 19:53:23] 2025-11-25 00:52:39,120 | INFO     | 
[2025-11-24 19:53:23] 2025-11-25 00:52:39,128 | INFO     | architecture information:
[2025-11-24 19:53:23] 2025-11-25 00:52:39,138 | INFO     | executing command: cat /etc/os-release
[2025-11-24 19:53:23] 2025-11-25 00:52:39,178 | INFO     | cat /etc/os-release:
[2025-11-24 19:53:23] NAME="CentOS Linux"
[2025-11-24 19:53:23] VERSION="7 (Core)"
[2025-11-24 19:53:23] ID="centos"
[2025-11-24 19:53:23] ID_LIKE="rhel fedora"
[2025-11-24 19:53:23] VERSION_ID="7"
[2025-11-24 19:53:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 19:53:23] ANSI_COLOR="0;31"
[2025-11-24 19:53:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 19:53:23] HOME_URL="https://www.centos.org/"
[2025-11-24 19:53:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 19:53:23] 
[2025-11-24 19:53:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 19:53:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 19:53:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 19:53:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 19:53:23] 
[2025-11-24 19:53:23] 2025-11-25 00:52:39,179 | INFO     | ***************************************
[2025-11-24 19:53:23] 2025-11-25 00:52:39,682 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-24 19:53:23] 2025-11-25 00:52:39,773 | INFO     | sufficient remaining disk space (78996570112 B)
[2025-11-24 19:53:23] 2025-11-25 00:52:39,773 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 19:53:23] 2025-11-25 00:52:39,773 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 19:53:23] 2025-11-25 00:52:39,773 | INFO     | update_server=False
[2025-11-24 19:53:23] 2025-11-25 00:52:39,773 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 19:53:23] 2025-11-25 00:52:39,774 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 19:53:23] 2025-11-25 00:52:39,774 | INFO     | aborting loop
[2025-11-24 19:53:23] 2025-11-25 00:52:39,951 | INFO     | all job control threads have been joined
[2025-11-24 19:53:23] 2025-11-25 00:52:39,964 | INFO     | all data control threads have been joined
[2025-11-24 19:53:23] 2025-11-25 00:52:40,428 | INFO     | all payload control threads have been joined
[2025-11-24 19:53:23] 2025-11-25 00:52:40,779 | INFO     | [job] retrieve thread has finished
[2025-11-24 19:53:23] 2025-11-25 00:52:40,780 | INFO     | [job] job monitor thread has finished
[2025-11-24 19:53:23] 2025-11-25 00:52:40,903 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 19:53:23] 2025-11-25 00:52:40,956 | INFO     | [job] control thread has finished
[2025-11-24 19:53:23] 2025-11-25 00:52:40,970 | INFO     | [data] control thread has finished
[2025-11-24 19:53:23] 2025-11-25 00:52:40,991 | INFO     | [payload] validate_post thread has finished
[2025-11-24 19:53:23] 2025-11-25 00:52:41,348 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 19:53:23] 2025-11-25 00:52:41,374 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 19:53:23] 2025-11-25 00:52:41,434 | INFO     | [payload] control thread has finished
[2025-11-24 19:53:23] 2025-11-25 00:52:41,495 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 19:53:23] 2025-11-25 00:52:41,597 | INFO     | [data] copytool_in thread has finished
[2025-11-24 19:53:23] 2025-11-25 00:52:41,820 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 19:53:23] 2025-11-25 00:52:41,917 | INFO     | [payload] failed_post thread has finished
[2025-11-24 19:53:23] 2025-11-25 00:52:42,050 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 19:53:23] 2025-11-25 00:52:42,322 | INFO     | [job] validate thread has finished
[2025-11-24 19:53:23] 2025-11-25 00:52:42,826 | INFO     | [job] queue monitor thread has finished
[2025-11-24 19:53:23] 2025-11-25 00:52:42,914 | INFO     | [data] copytool_out thread has finished
[2025-11-24 19:53:23] 2025-11-25 00:52:42,914 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 19:53:23] 2025-11-25 00:52:46,930 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 19:53:23] 2025-11-25 00:53:09,413 | INFO     | [monitor] cgroup control has ended
[2025-11-24 19:53:23] 2025-11-25 00:53:10,441 | INFO     | PID=3172769 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 19:53:23] 2025-11-25 00:53:10,441 | INFO     | .. there are 20 such processes running
[2025-11-24 19:53:23] 2025-11-25 00:53:10,443 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 19:53:23] 2025-11-25 00:53:10,443 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 19:53:23] 2025-11-25 00:53:10,443 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 19:53:23] 2025-11-25 00:53:11,005 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140280296560448)>', '<ExcThread(monitor, started 140279621326592)>']
[2025-11-24 19:53:23] 2025-11-25 00:53:11,465 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 19:53:23] 2025-11-25 00:53:11,465 | INFO     | [monitor] control thread has ended
[2025-11-24 19:53:23] 2025-11-25 00:53:16,085 | INFO     | all workflow threads have been joined
[2025-11-24 19:53:23] 2025-11-25 00:53:16,085 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 19:53:23] 2025-11-25 00:53:16,085 | INFO     | traces error code: 0
[2025-11-24 19:53:23] 2025-11-25 00:53:16,086 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 19:53:23] 2025-11-25 00:53:21,431 [wrapper] ==== pilot stdout END ====
[2025-11-24 19:53:23] 2025-11-25 00:53:21,434 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 19:53:23] 2025-11-25 00:53:21,439 [wrapper] pilotpid: 3172769
[2025-11-24 19:53:23] 2025-11-25 00:53:21,464 [wrapper] Pilot exit status: 0
[2025-11-24 19:53:23] 2025-11-25 00:53:21,640 [wrapper] pandaids: 6893856363
[2025-11-24 19:53:23] 2025-11-25 00:53:22,276 [wrapper] cleanup supervisor_pilot 1904179 3172770
[2025-11-24 19:53:23] 2025-11-25 00:53:22,320 [wrapper] Test setup, not cleaning
[2025-11-24 19:53:23] 2025-11-25 00:53:22,357 [wrapper] apfmon messages muted
[2025-11-24 19:53:23] 2025-11-25 00:53:22,404 [wrapper] ==== wrapper stdout END ====
[2025-11-24 19:53:23] 2025-11-25 00:53:22,442 [wrapper] ==== wrapper stderr END ====
[2025-11-24 19:53:23]  *** Error codes and diagnostics ***
[2025-11-24 19:53:23]     "exeErrorCode": 0,
[2025-11-24 19:53:23]     "exeErrorDiag": "",
[2025-11-24 19:53:23]     "pilotErrorCode": 0,
[2025-11-24 19:53:23]     "pilotErrorDiag": "",
[2025-11-24 19:53:23]  *** Listing of results directory ***
[2025-11-24 19:53:23] total 1309304
[2025-11-24 19:53:23] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 07:07 pilot3.tar.gz
[2025-11-24 19:53:23] -rwx------. 1 boincer umatlas     36292 Nov 20 07:49 runpilot2-wrapper.sh
[2025-11-24 19:53:23] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 07:49 queuedata.json
[2025-11-24 19:53:23] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 19:53:23] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:04 run_atlas
[2025-11-24 19:53:23] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:04 job.xml
[2025-11-24 19:53:23] -rw-r--r--. 2 boincer umatlas 408292867 Nov 24 00:04 EVNT.47493127._000461.pool.root.1
[2025-11-24 19:53:23] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:04 start_atlas.sh
[2025-11-24 19:53:23] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:04 shared
[2025-11-24 19:53:23] -rw-r--r--. 2 boincer umatlas    590099 Nov 24 00:04 input.tar.gz
[2025-11-24 19:53:23] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:04 boinc_lockfile
[2025-11-24 19:53:23] -rw-r--r--. 1 boincer umatlas      2786 Nov 24 00:04 pandaJob.out
[2025-11-24 19:53:23] -rw-------. 1 boincer umatlas        57 Nov 24 00:04 setup.sh.local
[2025-11-24 19:53:23] -rw-------. 1 boincer umatlas    989786 Nov 24 00:04 agis_schedconf.cvmfs.json
[2025-11-24 19:53:23] drwx------. 5 boincer umatlas      4096 Nov 24 00:04 pilot3
[2025-11-24 19:53:23] -rw-r--r--. 1 boincer umatlas       533 Nov 24 18:17 boinc_task_state.xml
[2025-11-24 19:53:23] -rw-------. 1 boincer umatlas 906028604 Nov 24 19:46 HITS.47523449._004607.pool.root.1
[2025-11-24 19:53:23] -rw-r--r--. 1 boincer umatlas      6903 Nov 24 19:47 init_data.xml
[2025-11-24 19:53:23] -rw-------. 1 boincer umatlas      1058 Nov 24 19:51 memory_monitor_summary.json
[2025-11-24 19:53:23] -rw-------. 1 boincer umatlas   1516227 Nov 24 19:51 agis_ddmendpoints.agis.ALL.json
[2025-11-24 19:53:23] -rw-------. 1 boincer umatlas   2248828 Nov 24 19:51 log.47523449._004607.job.log.tgz.1
[2025-11-24 19:53:23] -rw-------. 1 boincer umatlas      8606 Nov 24 19:52 heartbeat.json
[2025-11-24 19:53:23] -rw-------. 1 boincer umatlas        95 Nov 24 19:53 pilot_heartbeat.json
[2025-11-24 19:53:23] -rw-------. 1 boincer umatlas      4824 Nov 24 19:53 pilotlog.txt
[2025-11-24 19:53:23] -rw-r--r--. 1 boincer umatlas        29 Nov 24 19:53 wrapper_checkpoint.txt
[2025-11-24 19:53:23] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 19:53 boinc_mmap_file
[2025-11-24 19:53:23] -rw-------. 1 boincer umatlas   8994331 Nov 24 19:53 log.47523449._004607.job.log.1
[2025-11-24 19:53:23] -rw-------. 1 boincer umatlas       353 Nov 24 19:53 output.list
[2025-11-24 19:53:23] -rw-r--r--. 1 boincer umatlas       620 Nov 24 19:53 runtime_log
[2025-11-24 19:53:23] -rw-------. 1 boincer umatlas  11264000 Nov 24 19:53 result.tar.gz
[2025-11-24 19:53:23] -rw-r--r--. 1 boincer umatlas      9343 Nov 24 19:53 runtime_log.err
[2025-11-24 19:53:23] -rw-------. 1 boincer umatlas       661 Nov 24 19:53 KsMMDmcHJg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmYeGKDm0AKESo.diag
[2025-11-24 19:53:23] -rw-r--r--. 1 boincer umatlas     21780 Nov 24 19:53 stderr.txt
[2025-11-24 19:53:23] HITS file was successfully produced:
[2025-11-24 19:53:23] -rw-------. 1 boincer umatlas 906028604 Nov 24 19:46 shared/HITS.pool.root.1
[2025-11-24 19:53:23]  *** Contents of shared directory: ***
[2025-11-24 19:53:23] total 1295124
[2025-11-24 19:53:23] -rw-r--r--. 2 boincer umatlas 408292867 Nov 24 00:04 ATLAS.root_0
[2025-11-24 19:53:23] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:04 start_atlas.sh
[2025-11-24 19:53:23] -rw-r--r--. 2 boincer umatlas    590099 Nov 24 00:04 input.tar.gz
[2025-11-24 19:53:23] -rw-------. 1 boincer umatlas 906028604 Nov 24 19:46 HITS.pool.root.1
[2025-11-24 19:53:23] -rw-------. 1 boincer umatlas  11264000 Nov 24 19:53 result.tar.gz
19:53:24 (3162140): run_atlas exited; CPU time 199963.860252
19:53:24 (3162140): called boinc_finish(0)

</stderr_txt>
]]>

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