Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:27:17 (1406626): wrapper (7.7.26015): starting
07:27:17 (1406626): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 07:27:17] Arguments: --nthreads 3
[2025-11-26 07:27:17] Threads: 3
[2025-11-26 07:27:17] Checking for CVMFS
[2025-11-26 07:27:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 07:27:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 07:27:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 07:27:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 07:27:17] 2.9.2.0 4065016 10874 89120 153312 2 81 34729573 36864001 0 130560 1 4051862 99.929 552125 759 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 07:27:17] CVMFS is ok
[2025-11-26 07:27:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 07:27:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 07:27:17] Further information can be found at the LHC@home message board.
[2025-11-26 07:27:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 07:27:17] Checking for apptainer binary...
[2025-11-26 07:27:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 07:27:17] Running /usr/bin/apptainer --version
[2025-11-26 07:27:17] apptainer version 1.4.1-1.1
[2025-11-26 07:27:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 07:27:17] thA312a
[2025-11-26 07:27:17] apptainer works
[2025-11-26 07:27:17] Set ATHENA_PROC_NUMBER=3
[2025-11-26 07:27:17] Set ATHENA_CORE_NUMBER=3
[2025-11-26 07:27:17] Starting ATLAS job with PandaID=6895343323
[2025-11-26 07:27:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 15:25:15]  *** The last 200 lines of the pilot log: ***
[2025-11-26 15:25:15] 2025-11-26 14:24:43,856 | INFO     | job 6895343323 has completed (purged errors)
[2025-11-26 15:25:15] 2025-11-26 14:24:43,856 | INFO     | overall cleanup function is called
[2025-11-26 15:25:15] 2025-11-26 14:24:44,865 | INFO     | --- collectZombieJob: --- 10, [1416813]
[2025-11-26 15:25:15] 2025-11-26 14:24:44,865 | INFO     | zombie collector waiting for pid 1416813
[2025-11-26 15:25:15] 2025-11-26 14:24:44,865 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 15:25:15] 2025-11-26 14:24:44,865 | INFO     | collected zombie processes
[2025-11-26 15:25:15] 2025-11-26 14:24:44,865 | INFO     | will attempt to kill all subprocesses of pid=1416813
[2025-11-26 15:25:15] 2025-11-26 14:24:44,915 | INFO     | process IDs to be killed: [1416813] (in reverse order)
[2025-11-26 15:25:15] 2025-11-26 14:24:44,942 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 15:25:15] 2025-11-26 14:24:44,942 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 15:25:15] 2025-11-26 14:24:44,943 | INFO     | did not find any defunct processes belonging to 1416813
[2025-11-26 15:25:15] 2025-11-26 14:24:44,944 | INFO     | did not find any defunct processes belonging to 1416813
[2025-11-26 15:25:15] 2025-11-26 14:24:44,945 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 15:25:15] 2025-11-26 14:24:44,945 | INFO     | ready for new job
[2025-11-26 15:25:15] 2025-11-26 14:24:44,945 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 15:25:15] 2025-11-26 14:24:44,946 | INFO     | ***************************************
[2025-11-26 15:25:15] 2025-11-26 14:24:44,946 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 15:25:15] 2025-11-26 14:24:44,946 | INFO     | ***************************************
[2025-11-26 15:25:15] 2025-11-26 14:24:44,946 | INFO     | 
[2025-11-26 15:25:15] 2025-11-26 14:24:44,946 | INFO     | architecture information:
[2025-11-26 15:25:15] 2025-11-26 14:24:44,947 | INFO     | executing command: cat /etc/os-release
[2025-11-26 15:25:15] 2025-11-26 14:24:44,956 | INFO     | cat /etc/os-release:
[2025-11-26 15:25:15] NAME="CentOS Linux"
[2025-11-26 15:25:15] VERSION="7 (Core)"
[2025-11-26 15:25:15] ID="centos"
[2025-11-26 15:25:15] ID_LIKE="rhel fedora"
[2025-11-26 15:25:15] VERSION_ID="7"
[2025-11-26 15:25:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 15:25:15] ANSI_COLOR="0;31"
[2025-11-26 15:25:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 15:25:15] HOME_URL="https://www.centos.org/"
[2025-11-26 15:25:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 15:25:15] 
[2025-11-26 15:25:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 15:25:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 15:25:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 15:25:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 15:25:15] 
[2025-11-26 15:25:15] 2025-11-26 14:24:44,956 | INFO     | ***************************************
[2025-11-26 15:25:15] 2025-11-26 14:24:45,460 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 15:25:15] 2025-11-26 14:24:45,473 | INFO     | sufficient remaining disk space (266491396096 B)
[2025-11-26 15:25:15] 2025-11-26 14:24:45,473 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 15:25:15] 2025-11-26 14:24:45,473 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 15:25:15] 2025-11-26 14:24:45,474 | INFO     | update_server=False
[2025-11-26 15:25:15] 2025-11-26 14:24:45,474 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 15:25:15] 2025-11-26 14:24:45,474 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 15:25:15] 2025-11-26 14:24:45,474 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:25:15] 2025-11-26 14:24:45,474 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:25:15] 2025-11-26 14:24:45,474 | INFO     | aborting loop
[2025-11-26 15:25:15] 2025-11-26 14:24:46,177 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 15:25:15] 2025-11-26 14:24:46,187 | INFO     | all data control threads have been joined
[2025-11-26 15:25:15] 2025-11-26 14:24:46,477 | INFO     | [job] queue monitor thread has finished
[2025-11-26 15:25:15] 2025-11-26 14:24:46,478 | INFO     | [job] retrieve thread has finished
[2025-11-26 15:25:15] 2025-11-26 14:24:46,479 | INFO     | [job] job monitor thread has finished
[2025-11-26 15:25:15] 2025-11-26 14:24:46,591 | INFO     | all payload control threads have been joined
[2025-11-26 15:25:15] 2025-11-26 14:24:46,638 | INFO     | all job control threads have been joined
[2025-11-26 15:25:15] 2025-11-26 14:24:46,767 | INFO     | [payload] validate_post thread has finished
[2025-11-26 15:25:15] 2025-11-26 14:24:47,191 | INFO     | [data] control thread has finished
[2025-11-26 15:25:15] 2025-11-26 14:24:47,480 | INFO     | [data] copytool_out thread has finished
[2025-11-26 15:25:15] 2025-11-26 14:24:47,594 | INFO     | [payload] failed_post thread has finished
[2025-11-26 15:25:15] 2025-11-26 14:24:47,597 | INFO     | [payload] control thread has finished
[2025-11-26 15:25:15] 2025-11-26 14:24:47,638 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 15:25:15] 2025-11-26 14:24:47,644 | INFO     | [job] control thread has finished
[2025-11-26 15:25:15] 2025-11-26 14:24:47,647 | INFO     | [job] validate thread has finished
[2025-11-26 15:25:15] 2025-11-26 14:24:47,647 | INFO     | [data] copytool_in thread has finished
[2025-11-26 15:25:15] 2025-11-26 14:24:47,647 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 15:25:15] 2025-11-26 14:24:47,656 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 15:25:15] 2025-11-26 14:24:50,184 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 15:25:15] 2025-11-26 14:24:53,995 | INFO     | [monitor] cgroup control has ended
[2025-11-26 15:25:15] 2025-11-26 14:24:55,709 | INFO     | job.realtimelogging is not enabled
[2025-11-26 15:25:15] 2025-11-26 14:24:56,714 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 15:25:15] 2025-11-26 14:24:57,111 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139971752650560)>', '<ExcThread(monitor, started 139971407099648)>']
[2025-11-26 15:25:15] 2025-11-26 14:25:02,125 | INFO     | all workflow threads have been joined
[2025-11-26 15:25:15] 2025-11-26 14:25:02,125 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 15:25:15] 2025-11-26 14:25:02,125 | INFO     | traces error code: 0
[2025-11-26 15:25:15] 2025-11-26 14:25:02,125 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 15:25:15] 2025-11-26 14:25:15,325 | INFO     | PID=1410346 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 15:25:15] 2025-11-26 14:25:15,325 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 15:25:15] 2025-11-26 14:25:15,325 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 15:25:15] 2025-11-26 14:25:15,325 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 15:25:15] 2025-11-26 14:25:15,325 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 15:25:15] 2025-11-26 14:25:15,325 | INFO     | [monitor] control thread has ended
[2025-11-26 15:25:15] 2025-11-26 14:25:15,373 [wrapper] ==== pilot stdout END ====
[2025-11-26 15:25:15] 2025-11-26 14:25:15,376 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 15:25:15] 2025-11-26 14:25:15,378 [wrapper] pilotpid: 1410346
[2025-11-26 15:25:15] 2025-11-26 14:25:15,380 [wrapper] Pilot exit status: 0
[2025-11-26 15:25:15] 2025-11-26 14:25:15,388 [wrapper] pandaids: 6895343323
[2025-11-26 15:25:15] 2025-11-26 14:25:15,406 [wrapper] cleanup supervisor_pilot 1471053 1410347
[2025-11-26 15:25:15] 2025-11-26 14:25:15,408 [wrapper] Test setup, not cleaning
[2025-11-26 15:25:15] 2025-11-26 14:25:15,411 [wrapper] apfmon messages muted
[2025-11-26 15:25:15] 2025-11-26 14:25:15,413 [wrapper] ==== wrapper stdout END ====
[2025-11-26 15:25:15] 2025-11-26 14:25:15,416 [wrapper] ==== wrapper stderr END ====
[2025-11-26 15:25:15]  *** Error codes and diagnostics ***
[2025-11-26 15:25:15]     "exeErrorCode": 0,
[2025-11-26 15:25:15]     "exeErrorDiag": "",
[2025-11-26 15:25:15]     "pilotErrorCode": 0,
[2025-11-26 15:25:15]     "pilotErrorDiag": "",
[2025-11-26 15:25:15]  *** Listing of results directory ***
[2025-11-26 15:25:15] total 1315736
[2025-11-26 15:25:15] -rw-r--r-- 1 boinc boinc    576529 Nov 22 16:48 pilot3.tar.gz
[2025-11-26 15:25:15] -rw-r--r-- 1 boinc boinc      5112 Nov 22 17:03 queuedata.json
[2025-11-26 15:25:15] -rwx------ 1 boinc boinc     36292 Nov 22 17:03 runpilot2-wrapper.sh
[2025-11-26 15:25:15] -rw-r--r-- 1 boinc boinc       100 Nov 26 07:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 15:25:15] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 07:27 run_atlas
[2025-11-26 15:25:15] -rw-r--r-- 1 boinc boinc       105 Nov 26 07:27 job.xml
[2025-11-26 15:25:15] -rw-r--r-- 2 boinc boinc 408344722 Nov 26 07:27 EVNT.47483658._000423.pool.root.1
[2025-11-26 15:25:15] -rw-r--r-- 2 boinc boinc    590100 Nov 26 07:27 input.tar.gz
[2025-11-26 15:25:15] drwxrwx--x 2 boinc boinc      4096 Nov 26 07:27 shared
[2025-11-26 15:25:15] -rw-r--r-- 2 boinc boinc     15847 Nov 26 07:27 start_atlas.sh
[2025-11-26 15:25:15] -rw-r--r-- 1 boinc boinc         0 Nov 26 07:27 boinc_setup_complete
[2025-11-26 15:25:15] -rw-r--r-- 1 boinc boinc      6448 Nov 26 07:27 init_data.xml
[2025-11-26 15:25:15] -rw-r--r-- 1 boinc boinc         0 Nov 26 07:27 boinc_lockfile
[2025-11-26 15:25:15] -rw-r--r-- 1 boinc boinc      2784 Nov 26 07:27 pandaJob.out
[2025-11-26 15:25:15] -rw------- 1 boinc boinc    991877 Nov 26 07:27 agis_schedconf.cvmfs.json
[2025-11-26 15:25:15] drwx------ 5 boinc boinc      4096 Nov 26 07:27 pilot3
[2025-11-26 15:25:15] -rw-r--r-- 1 boinc boinc       532 Nov 26 15:20 boinc_task_state.xml
[2025-11-26 15:25:15] -rw------- 1 boinc boinc 924659531 Nov 26 15:24 HITS.47556137._004185.pool.root.1
[2025-11-26 15:25:15] -rw------- 1 boinc boinc      1021 Nov 26 15:24 memory_monitor_summary.json
[2025-11-26 15:25:15] -rw------- 1 boinc boinc   1516240 Nov 26 15:24 agis_ddmendpoints.agis.ALL.json
[2025-11-26 15:25:15] -rw------- 1 boinc boinc   1172383 Nov 26 15:24 log.47556137._004185.job.log.tgz.1
[2025-11-26 15:25:15] -rw------- 1 boinc boinc      8557 Nov 26 15:24 heartbeat.json
[2025-11-26 15:25:15] -rw-r--r-- 1 boinc boinc      8192 Nov 26 15:25 boinc_mmap_file
[2025-11-26 15:25:15] -rw-r--r-- 1 boinc boinc        28 Nov 26 15:25 wrapper_checkpoint.txt
[2025-11-26 15:25:15] -rw------- 1 boinc boinc       747 Nov 26 15:25 pilotlog.txt
[2025-11-26 15:25:15] -rw------- 1 boinc boinc        95 Nov 26 15:25 pilot_heartbeat.json
[2025-11-26 15:25:15] -rw------- 1 boinc boinc   4030510 Nov 26 15:25 log.47556137._004185.job.log.1
[2025-11-26 15:25:15] -rw------- 1 boinc boinc       353 Nov 26 15:25 output.list
[2025-11-26 15:25:15] -rw-r--r-- 1 boinc boinc       620 Nov 26 15:25 runtime_log
[2025-11-26 15:25:15] -rw------- 1 boinc boinc   5222400 Nov 26 15:25 result.tar.gz
[2025-11-26 15:25:15] -rw-r--r-- 1 boinc boinc      8903 Nov 26 15:25 runtime_log.err
[2025-11-26 15:25:15] -rw------- 1 boinc boinc       666 Nov 26 15:25 olEODm9F5g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRFKKDm3PmYCo.diag
[2025-11-26 15:25:15] -rw-r--r-- 1 boinc boinc     11130 Nov 26 15:25 stderr.txt
[2025-11-26 15:25:15] HITS file was successfully produced:
[2025-11-26 15:25:15] -rw------- 1 boinc boinc 924659531 Nov 26 15:24 shared/HITS.pool.root.1
[2025-11-26 15:25:15]  *** Contents of shared directory: ***
[2025-11-26 15:25:15] total 1307468
[2025-11-26 15:25:15] -rw-r--r-- 2 boinc boinc 408344722 Nov 26 07:27 ATLAS.root_0
[2025-11-26 15:25:15] -rw-r--r-- 2 boinc boinc    590100 Nov 26 07:27 input.tar.gz
[2025-11-26 15:25:15] -rw-r--r-- 2 boinc boinc     15847 Nov 26 07:27 start_atlas.sh
[2025-11-26 15:25:15] -rw------- 1 boinc boinc 924659531 Nov 26 15:24 HITS.pool.root.1
[2025-11-26 15:25:15] -rw------- 1 boinc boinc   5222400 Nov 26 15:25 result.tar.gz
15:25:17 (1406626): run_atlas exited; CPU time 84470.697994
15:25:17 (1406626): called boinc_finish(0)

</stderr_txt>
]]>

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