Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:01:02 (9891): wrapper (7.7.26015): starting
08:01:02 (9891): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 08:01:02] Arguments: --nthreads 8
[2025-11-23 08:01:02] Threads: 8
[2025-11-23 08:01:02] Checking for CVMFS
[2025-11-23 08:01:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 08:01:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 08:01:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 08:01:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 08:01:02] 2.11.2.0 2877 54751 85472 153209 1 83 12101733 20275200 1 130560 0 12541616 99.883 2566582 27136 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 08:01:02] CVMFS is ok
[2025-11-23 08:01:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 08:01:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 08:01:02] Further information can be found at the LHC@home message board.
[2025-11-23 08:01:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 08:01:02] Checking for apptainer binary...
[2025-11-23 08:01:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 08:01:02] Running /usr/bin/apptainer --version
[2025-11-23 08:01:02] apptainer version 1.3.2-1.el7
[2025-11-23 08:01:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 08:01:04] c-204-32.aglt2.org
[2025-11-23 08:01:04] apptainer works
[2025-11-23 08:01:04] Set ATHENA_PROC_NUMBER=8
[2025-11-23 08:01:04] Set ATHENA_CORE_NUMBER=8
[2025-11-23 08:01:04] Starting ATLAS job with PandaID=6895335041
[2025-11-23 08:01:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:27:20 (15573): wrapper (7.7.26015): starting
15:27:20 (15573): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 15:27:20] Arguments: --nthreads 8
[2025-11-23 15:27:20] Threads: 8
[2025-11-23 15:27:20] This job has been restarted, cleaning up previous attempt
[2025-11-23 15:27:20] Checking for CVMFS
[2025-11-23 15:27:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 15:27:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 15:27:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 15:27:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 15:27:20] 2.11.2.0 2877 55198 84152 153220 3 49 12664702 20275201 1 130560 0 12709601 99.885 2583551 27185 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 15:27:20] CVMFS is ok
[2025-11-23 15:27:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 15:27:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 15:27:20] Further information can be found at the LHC@home message board.
[2025-11-23 15:27:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 15:27:20] Checking for apptainer binary...
[2025-11-23 15:27:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 15:27:20] Running /usr/bin/apptainer --version
[2025-11-23 15:27:20] apptainer version 1.3.2-1.el7
[2025-11-23 15:27:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 15:27:22] c-204-32.aglt2.org
[2025-11-23 15:27:22] apptainer works
[2025-11-23 15:27:22] Set ATHENA_PROC_NUMBER=8
[2025-11-23 15:27:22] Set ATHENA_CORE_NUMBER=8
[2025-11-23 15:27:22] Starting ATLAS job with PandaID=6895335041
[2025-11-23 15:27:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 03:48:59]  *** The last 200 lines of the pilot log: ***
[2025-11-24 03:48:59] 2025-11-24 08:47:57,452 | INFO     | time since job start (44417s) is within the limit (172800.0s)
[2025-11-24 03:48:59] 2025-11-24 08:47:59,429 | INFO     | monitor loop #3260: job 0:6895335041 is in state 'finished'
[2025-11-24 03:48:59] 2025-11-24 08:47:59,429 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:48:59] 2025-11-24 08:47:59,458 | INFO     | time since job start (44419s) is within the limit (172800.0s)
[2025-11-24 03:48:59] 2025-11-24 08:48:00,259 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 03:48:59] 2025-11-24 08:48:00,264 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1695.875
[2025-11-24 03:48:59] 2025-11-24 08:48:00,266 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895335041/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 03:48:59] 2025-11-24 08:48:00,267 | INFO     | extracted standard info from prmon json
[2025-11-24 03:48:59] 2025-11-24 08:48:00,267 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 03:48:59] 2025-11-24 08:48:00,268 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 03:48:59] 2025-11-24 08:48:00,282 | INFO     | fitting pss+swap vs Time
[2025-11-24 03:48:59] 2025-11-24 08:48:00,283 | INFO     | sum of square deviations: 119638805534.07553
[2025-11-24 03:48:59] 2025-11-24 08:48:00,293 | INFO     | sum of deviations: 762507425636.9604
[2025-11-24 03:48:59] 2025-11-24 08:48:00,294 | INFO     | mean x: 1763951867.1524725
[2025-11-24 03:48:59] 2025-11-24 08:48:00,294 | INFO     | mean y: 3247987.883241758
[2025-11-24 03:48:59] 2025-11-24 08:48:00,294 | INFO     | intersect: -11239144404.4986
[2025-11-24 03:48:59] 2025-11-24 08:48:00,295 | INFO     | chi2: 5.64964290509886
[2025-11-24 03:48:59] 2025-11-24 08:48:00,296 | INFO     | sum of square deviations: 117190755666.93207
[2025-11-24 03:48:59] 2025-11-24 08:48:00,306 | INFO     | sum of deviations: 1032401608778.729
[2025-11-24 03:48:59] 2025-11-24 08:48:00,306 | INFO     | mean x: 1763951714.6569848
[2025-11-24 03:48:59] 2025-11-24 08:48:00,307 | INFO     | mean y: 3264790.865836791
[2025-11-24 03:48:59] 2025-11-24 08:48:00,307 | INFO     | intersect: -15536413041.706871
[2025-11-24 03:48:59] 2025-11-24 08:48:00,308 | INFO     | chi2: 2.5809895453922658
[2025-11-24 03:48:59] 2025-11-24 08:48:00,308 | INFO     | current chi2=2.5809895453922658 (change=54.31588175134225 %)
[2025-11-24 03:48:59] 2025-11-24 08:48:00,308 | INFO     | sum of square deviations: 114776290478.58061
[2025-11-24 03:48:59] 2025-11-24 08:48:00,319 | INFO     | sum of deviations: 1077518459947.381
[2025-11-24 03:48:59] 2025-11-24 08:48:00,319 | INFO     | mean x: 1763951562.1601672
[2025-11-24 03:48:59] 2025-11-24 08:48:00,319 | INFO     | mean y: 3267629.1532033426
[2025-11-24 03:48:59] 2025-11-24 08:48:00,320 | INFO     | intersect: -16556688810.938442
[2025-11-24 03:48:59] 2025-11-24 08:48:00,320 | INFO     | chi2: 2.3599953142609915
[2025-11-24 03:48:59] 2025-11-24 08:48:00,321 | INFO     | current chi2=2.3599953142609915 (change=8.562383816153233 %)
[2025-11-24 03:48:59] 2025-11-24 08:48:00,321 | INFO     | right removable region: 717
[2025-11-24 03:48:59] 2025-11-24 08:48:00,322 | INFO     | sum of square deviations: 117190465916.9321
[2025-11-24 03:48:59] 2025-11-24 08:48:00,332 | INFO     | sum of deviations: 537945206165.19946
[2025-11-24 03:48:59] 2025-11-24 08:48:00,332 | INFO     | mean x: 1763952019.6569848
[2025-11-24 03:48:59] 2025-11-24 08:48:00,332 | INFO     | mean y: 3261953.5048409407
[2025-11-24 03:48:59] 2025-11-24 08:48:00,333 | INFO     | intersect: -8093894461.527338
[2025-11-24 03:48:59] 2025-11-24 08:48:00,333 | INFO     | chi2: 3.4379055250709176
[2025-11-24 03:48:59] 2025-11-24 08:48:00,333 | INFO     | current chi2=3.4379055250709176 (change=39.14826861060239 %)
[2025-11-24 03:48:59] 2025-11-24 08:48:00,334 | INFO     | sum of square deviations: 114775931250.52939
[2025-11-24 03:48:59] 2025-11-24 08:48:00,345 | INFO     | sum of deviations: 487403235132.0975
[2025-11-24 03:48:59] 2025-11-24 08:48:00,345 | INFO     | mean x: 1763952172.155989
[2025-11-24 03:48:59] 2025-11-24 08:48:00,345 | INFO     | mean y: 3265144.1866295263
[2025-11-24 03:48:59] 2025-11-24 08:48:00,345 | INFO     | intersect: -7487469071.25154
[2025-11-24 03:48:59] 2025-11-24 08:48:00,346 | INFO     | chi2: 3.380898609902221
[2025-11-24 03:48:59] 2025-11-24 08:48:00,346 | INFO     | current chi2=3.380898609902221 (change=1.6581873688201705 %)
[2025-11-24 03:48:59] 2025-11-24 08:48:00,346 | INFO     | left removable region: 20
[2025-11-24 03:48:59] 2025-11-24 08:48:00,347 | INFO     | sum of square deviations: 104996930567.44061
[2025-11-24 03:48:59] 2025-11-24 08:48:00,357 | INFO     | sum of deviations: 749093647083.8256
[2025-11-24 03:48:59] 2025-11-24 08:48:00,357 | INFO     | mean x: 1763952141.6642754
[2025-11-24 03:48:59] 2025-11-24 08:48:00,357 | INFO     | mean y: 3288506.494978479
[2025-11-24 03:48:59] 2025-11-24 08:48:00,357 | INFO     | intersect: -12581511219.930267
[2025-11-24 03:48:59] 2025-11-24 08:48:00,358 | INFO     | chi2: 0.058306825366879256
[2025-11-24 03:48:59] 2025-11-24 08:48:00,358 | INFO     | current memory leak: 7.13 B/s (using 697 data points, chi2=0.06)
[2025-11-24 03:48:59] 2025-11-24 08:48:00,359 | INFO     | could have reported an average CPU frequency of 2165 MHz (28 samples)
[2025-11-24 03:48:59] 2025-11-24 08:48:00,359 | INFO     | ..............................
[2025-11-24 03:48:59] 2025-11-24 08:48:00,359 | INFO     | . Timing measurements:
[2025-11-24 03:48:59] 2025-11-24 08:48:00,359 | INFO     | . get job = 0 s
[2025-11-24 03:48:59] 2025-11-24 08:48:00,359 | INFO     | . initial setup = 2 s
[2025-11-24 03:48:59] 2025-11-24 08:48:00,359 | INFO     | . payload setup = 9 s
[2025-11-24 03:48:59] 2025-11-24 08:48:00,360 | INFO     | . stage-in = 0 s
[2025-11-24 03:48:59] 2025-11-24 08:48:00,360 | INFO     | . payload execution = 44375 s
[2025-11-24 03:48:59] 2025-11-24 08:48:00,360 | INFO     | . stage-out = 3 s
[2025-11-24 03:48:59] 2025-11-24 08:48:00,360 | INFO     | . log creation = 0 s
[2025-11-24 03:48:59] 2025-11-24 08:48:00,360 | INFO     | ..............................
[2025-11-24 03:48:59] 2025-11-24 08:48:00,460 | INFO     | 
[2025-11-24 03:48:59] 2025-11-24 08:48:00,461 | INFO     | job summary report
[2025-11-24 03:48:59] 2025-11-24 08:48:00,461 | INFO     | --------------------------------------------------
[2025-11-24 03:48:59] 2025-11-24 08:48:00,461 | INFO     | PanDA job id: 6895335041
[2025-11-24 03:48:59] 2025-11-24 08:48:00,461 | INFO     | task id: 47556137
[2025-11-24 03:48:59] 2025-11-24 08:48:00,461 | INFO     | errors: (none)
[2025-11-24 03:48:59] 2025-11-24 08:48:00,462 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 03:48:59] 2025-11-24 08:48:00,462 | INFO     | pilot state: finished 
[2025-11-24 03:48:59] 2025-11-24 08:48:00,462 | INFO     | transexitcode: 0
[2025-11-24 03:48:59] 2025-11-24 08:48:00,462 | INFO     | exeerrorcode: 0
[2025-11-24 03:48:59] 2025-11-24 08:48:00,462 | INFO     | exeerrordiag: 
[2025-11-24 03:48:59] 2025-11-24 08:48:00,462 | INFO     | exitcode: 0
[2025-11-24 03:48:59] 2025-11-24 08:48:00,463 | INFO     | exitmsg: OK
[2025-11-24 03:48:59] 2025-11-24 08:48:00,463 | INFO     | cpuconsumptiontime: 344280 s
[2025-11-24 03:48:59] 2025-11-24 08:48:00,463 | INFO     | nevents: 1000
[2025-11-24 03:48:59] 2025-11-24 08:48:00,464 | INFO     | neventsw: 0
[2025-11-24 03:48:59] 2025-11-24 08:48:00,464 | INFO     | pid: 26842
[2025-11-24 03:48:59] 2025-11-24 08:48:00,464 | INFO     | pgrp: 26842
[2025-11-24 03:48:59] 2025-11-24 08:48:00,464 | INFO     | corecount: 8
[2025-11-24 03:48:59] 2025-11-24 08:48:00,464 | INFO     | event service: False
[2025-11-24 03:48:59] 2025-11-24 08:48:00,464 | INFO     | sizes: {0: 2298806, 6: 2299068, 11: 2299096, 44388: 2344799, 44389: 2344798, 44394: 2353848, 44396: 2354032, 44403: 2354278}
[2025-11-24 03:48:59] 2025-11-24 08:48:00,464 | INFO     | --------------------------------------------------
[2025-11-24 03:48:59] 2025-11-24 08:48:00,464 | INFO     | 
[2025-11-24 03:48:59] 2025-11-24 08:48:00,465 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 03:48:59] 2025-11-24 08:48:00,493 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 03:48:59] 2025-11-24 08:48:00,494 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 03:48:59] 2025-11-24 08:48:00,494 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 03:48:59] 2025-11-24 08:48:00,494 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 03:48:59] 2025-11-24 08:48:00,494 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 03:48:59] 2025-11-24 08:48:00,494 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 03:48:59] 2025-11-24 08:48:00,495 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 03:48:59] 2025-11-24 08:48:00,495 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 03:48:59] 2025-11-24 08:48:00,495 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 03:48:59] 2025-11-24 08:48:00,495 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 03:48:59] 2025-11-24 08:48:00,495 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 03:48:59] 2025-11-24 08:48:00,496 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 03:48:59] 2025-11-24 08:48:00,496 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 03:48:59] 2025-11-24 08:48:00,496 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 03:48:59] 2025-11-24 08:48:00,496 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 03:48:59] 2025-11-24 08:48:00,496 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 03:48:59] 2025-11-24 08:48:00,496 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 03:48:59] 2025-11-24 08:48:00,497 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 03:48:59] 2025-11-24 08:48:00,497 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 03:48:59] 2025-11-24 08:48:00,497 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 03:48:59] 2025-11-24 08:48:00,497 | INFO     | job 6895335041 has completed (purged errors)
[2025-11-24 03:48:59] 2025-11-24 08:48:00,498 | INFO     | overall cleanup function is called
[2025-11-24 03:48:59] 2025-11-24 08:48:01,513 | INFO     | --- collectZombieJob: --- 10, [26842]
[2025-11-24 03:48:59] 2025-11-24 08:48:01,513 | INFO     | zombie collector waiting for pid 26842
[2025-11-24 03:48:59] 2025-11-24 08:48:01,514 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 03:48:59] 2025-11-24 08:48:01,514 | INFO     | collected zombie processes
[2025-11-24 03:48:59] 2025-11-24 08:48:01,514 | INFO     | will attempt to kill all subprocesses of pid=26842
[2025-11-24 03:48:59] 2025-11-24 08:48:01,608 | INFO     | process IDs to be killed: [26842] (in reverse order)
[2025-11-24 03:48:59] 2025-11-24 08:48:01,664 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 03:48:59] 2025-11-24 08:48:01,664 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 03:48:59] 2025-11-24 08:48:01,669 | INFO     | did not find any defunct processes belonging to 26842
[2025-11-24 03:48:59] 2025-11-24 08:48:01,673 | INFO     | did not find any defunct processes belonging to 26842
[2025-11-24 03:48:59] 2025-11-24 08:48:01,676 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 03:48:59] 2025-11-24 08:48:01,676 | INFO     | ready for new job
[2025-11-24 03:48:59] 2025-11-24 08:48:01,677 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 03:48:59] 2025-11-24 08:48:01,680 | INFO     | ***************************************
[2025-11-24 03:48:59] 2025-11-24 08:48:01,680 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 03:48:59] 2025-11-24 08:48:01,680 | INFO     | ***************************************
[2025-11-24 03:48:59] 2025-11-24 08:48:01,680 | INFO     | 
[2025-11-24 03:48:59] 2025-11-24 08:48:01,681 | INFO     | architecture information:
[2025-11-24 03:48:59] 2025-11-24 08:48:01,682 | INFO     | executing command: cat /etc/os-release
[2025-11-24 03:48:59] 2025-11-24 08:48:01,701 | INFO     | cat /etc/os-release:
[2025-11-24 03:48:59] NAME="CentOS Linux"
[2025-11-24 03:48:59] VERSION="7 (Core)"
[2025-11-24 03:48:59] ID="centos"
[2025-11-24 03:48:59] ID_LIKE="rhel fedora"
[2025-11-24 03:48:59] VERSION_ID="7"
[2025-11-24 03:48:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 03:48:59] ANSI_COLOR="0;31"
[2025-11-24 03:48:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 03:48:59] HOME_URL="https://www.centos.org/"
[2025-11-24 03:48:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 03:48:59] 
[2025-11-24 03:48:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 03:48:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 03:48:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 03:48:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 03:48:59] 
[2025-11-24 03:48:59] 2025-11-24 08:48:01,701 | INFO     | ***************************************
[2025-11-24 03:48:59] 2025-11-24 08:48:02,204 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 03:48:59] 2025-11-24 08:48:02,225 | INFO     | sufficient remaining disk space (17011048448 B)
[2025-11-24 03:48:59] 2025-11-24 08:48:02,226 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 03:48:59] 2025-11-24 08:48:02,226 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 03:48:59] 2025-11-24 08:48:02,227 | INFO     | update_server=False
[2025-11-24 03:48:59] 2025-11-24 08:48:02,227 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 03:48:59] 2025-11-24 08:48:02,227 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:48:59] 2025-11-24 08:48:02,460 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 03:48:59] 2025-11-24 08:48:02,691 | INFO     | all data control threads have been joined
[2025-11-24 03:48:59] 2025-11-24 08:48:02,805 | INFO     | all payload control threads have been joined
[2025-11-24 03:48:59] 2025-11-24 08:48:02,943 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:48:59] 2025-11-24 08:48:02,943 | INFO     | aborting loop
[2025-11-24 03:48:59] 2025-11-24 08:48:03,230 | INFO     | [job] retrieve thread has finished
[2025-11-24 03:48:59] 2025-11-24 08:48:03,232 | INFO     | [job] queue monitor thread has finished
[2025-11-24 03:48:59] 2025-11-24 08:48:03,416 | INFO     | all job control threads have been joined
[2025-11-24 03:48:59] 2025-11-24 08:48:03,695 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 03:48:59] 2025-11-24 08:48:03,696 | INFO     | [data] control thread has finished
[2025-11-24 03:48:59] 2025-11-24 08:48:03,811 | INFO     | [payload] control thread has finished
[2025-11-24 03:48:59] 2025-11-24 08:48:03,867 | INFO     | [payload] validate_post thread has finished
[2025-11-24 03:48:59] 2025-11-24 08:48:03,944 | INFO     | [data] copytool_in thread has finished
[2025-11-24 03:48:59] 2025-11-24 08:48:03,944 | INFO     | [job] job monitor thread has finished
[2025-11-24 03:48:59] 2025-11-24 08:48:03,979 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 03:48:59] 2025-11-24 08:48:04,103 | INFO     | [job] validate thread has finished
[2025-11-24 03:48:59] 2025-11-24 08:48:04,110 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 03:48:59] 2025-11-24 08:48:04,421 | INFO     | [job] control thread has finished
[2025-11-24 03:48:59] 2025-11-24 08:48:04,465 | INFO     | [data] copytool_out thread has finished
[2025-11-24 03:48:59] 2025-11-24 08:48:04,506 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 03:48:59] 2025-11-24 08:48:04,622 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 03:48:59] 2025-11-24 08:48:04,633 | INFO     | [payload] failed_post thread has finished
[2025-11-24 03:48:59] 2025-11-24 08:48:08,512 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 03:48:59] 2025-11-24 08:48:32,672 | INFO     | PID=20426 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 03:48:59] 2025-11-24 08:48:32,672 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 03:48:59] 2025-11-24 08:48:32,673 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 03:48:59] 2025-11-24 08:48:32,673 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 03:48:59] 2025-11-24 08:48:54,100 | INFO     | [monitor] cgroup control has ended
[2025-11-24 03:48:59] 2025-11-24 08:48:54,439 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140718743824192)>', '<ExcThread(monitor, started 140718043535104)>']
[2025-11-24 03:48:59] 2025-11-24 08:48:54,780 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 03:48:59] 2025-11-24 08:48:54,780 | INFO     | [monitor] control thread has ended
[2025-11-24 03:48:59] 2025-11-24 08:48:59,445 | INFO     | all workflow threads have been joined
[2025-11-24 03:48:59] 2025-11-24 08:48:59,445 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 03:48:59] 2025-11-24 08:48:59,446 | INFO     | traces error code: 0
[2025-11-24 03:48:59] 2025-11-24 08:48:59,446 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 03:48:59] 2025-11-24 08:48:59,563 [wrapper] ==== pilot stdout END ====
[2025-11-24 03:48:59] 2025-11-24 08:48:59,569 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 03:48:59] 2025-11-24 08:48:59,575 [wrapper] pilotpid: 20426
[2025-11-24 03:48:59] 2025-11-24 08:48:59,579 [wrapper] Pilot exit status: 0
[2025-11-24 03:48:59] 2025-11-24 08:48:59,597 [wrapper] pandaids: 6895335041 6895335041
[2025-11-24 03:48:59] 2025-11-24 08:48:59,657 [wrapper] cleanup supervisor_pilot  7133 20427
[2025-11-24 03:48:59] 2025-11-24 08:48:59,662 [wrapper] Test setup, not cleaning
[2025-11-24 03:48:59] 2025-11-24 08:48:59,667 [wrapper] apfmon messages muted
[2025-11-24 03:48:59] 2025-11-24 08:48:59,672 [wrapper] ==== wrapper stdout END ====
[2025-11-24 03:48:59] 2025-11-24 08:48:59,677 [wrapper] ==== wrapper stderr END ====
[2025-11-24 03:48:59]  *** Error codes and diagnostics ***
[2025-11-24 03:48:59]     "exeErrorCode": 0,
[2025-11-24 03:48:59]     "exeErrorDiag": "",
[2025-11-24 03:48:59]     "pilotErrorCode": 0,
[2025-11-24 03:48:59]     "pilotErrorDiag": "",
[2025-11-24 03:48:59]  *** Listing of results directory ***
[2025-11-24 03:48:59] total 1726884
[2025-11-24 03:48:59] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-24 03:48:59] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 23:09 pilot3.tar.gz
[2025-11-24 03:48:59] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 23:13 queuedata.json
[2025-11-24 03:48:59] -rwx------ 1 boincer umatlas     36292 Nov 21 23:14 runpilot2-wrapper.sh
[2025-11-24 03:48:59] -rw-r--r-- 1 boincer umatlas       100 Nov 23 08:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 03:48:59] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 08:00 run_atlas
[2025-11-24 03:48:59] -rw-r--r-- 1 boincer umatlas       105 Nov 23 08:00 job.xml
[2025-11-24 03:48:59] -rw-r--r-- 3 boincer umatlas 411852302 Nov 23 08:01 EVNT.47483658._000247.pool.root.1
[2025-11-24 03:48:59] -rw-r--r-- 3 boincer umatlas 411852302 Nov 23 08:01 ATLAS.root_0
[2025-11-24 03:48:59] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 08:01 start_atlas.sh
[2025-11-24 03:48:59] drwxrwx--x 2 boincer umatlas      4096 Nov 23 08:01 shared
[2025-11-24 03:48:59] -rw-r--r-- 2 boincer umatlas    590098 Nov 23 08:01 input.tar.gz
[2025-11-24 03:48:59] -rw-r--r-- 1 boincer umatlas         0 Nov 23 08:01 boinc_lockfile
[2025-11-24 03:48:59] -rw-r--r-- 1 boincer umatlas      2785 Nov 23 15:27 pandaJob.out
[2025-11-24 03:48:59] -rw------- 1 boincer umatlas        57 Nov 23 15:27 setup.sh.local
[2025-11-24 03:48:59] -rw------- 1 boincer umatlas    989786 Nov 23 15:27 agis_schedconf.cvmfs.json
[2025-11-24 03:48:59] -rw-r--r-- 1 boincer umatlas       533 Nov 24 03:38 boinc_task_state.xml
[2025-11-24 03:48:59] -rw-r--r-- 1 boincer umatlas      5912 Nov 24 03:45 init_data.xml
[2025-11-24 03:48:59] -rw------- 1 boincer umatlas 924538185 Nov 24 03:47 HITS.47556137._002433.pool.root.1
[2025-11-24 03:48:59] -rw------- 1 boincer umatlas      1061 Nov 24 03:47 memory_monitor_summary.json
[2025-11-24 03:48:59] -rw------- 1 boincer umatlas        96 Nov 24 03:47 pilot_heartbeat.json
[2025-11-24 03:48:59] -rw------- 1 boincer umatlas   1526164 Nov 24 03:47 agis_ddmendpoints.agis.ALL.json
[2025-11-24 03:48:59] -rw------- 1 boincer umatlas   1976726 Nov 24 03:47 log.47556137._002433.job.log.tgz.1
[2025-11-24 03:48:59] -rw------- 1 boincer umatlas      8658 Nov 24 03:48 heartbeat.json
[2025-11-24 03:48:59] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 03:48 boinc_mmap_file
[2025-11-24 03:48:59] -rw-r--r-- 1 boincer umatlas        29 Nov 24 03:48 wrapper_checkpoint.txt
[2025-11-24 03:48:59] -rw------- 1 boincer umatlas      4746 Nov 24 03:48 pilotlog.txt
[2025-11-24 03:48:59] -rw------- 1 boincer umatlas   6104899 Nov 24 03:48 log.47556137._002433.job.log.1
[2025-11-24 03:48:59] -rw------- 1 boincer umatlas       353 Nov 24 03:48 output.list
[2025-11-24 03:48:59] -rw-r--r-- 1 boincer umatlas       620 Nov 24 03:48 runtime_log
[2025-11-24 03:48:59] -rw------- 1 boincer umatlas   8099840 Nov 24 03:48 result.tar.gz
[2025-11-24 03:48:59] -rw-r--r-- 1 boincer umatlas      9428 Nov 24 03:48 runtime_log.err
[2025-11-24 03:48:59] -rw------- 1 boincer umatlas       793 Nov 24 03:48 6fLLDm7Bug8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmfvJKDmBNm6vn.diag
[2025-11-24 03:48:59] -rw-r--r-- 1 boincer umatlas     23469 Nov 24 03:48 stderr.txt
[2025-11-24 03:48:59] HITS file was successfully produced:
[2025-11-24 03:48:59] -rw------- 1 boincer umatlas 924538185 Nov 24 03:47 shared/HITS.pool.root.1
[2025-11-24 03:48:59]  *** Contents of shared directory: ***
[2025-11-24 03:48:59] total 1313584
[2025-11-24 03:48:59] -rw-r--r-- 3 boincer umatlas 411852302 Nov 23 08:01 ATLAS.root_0
[2025-11-24 03:48:59] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 08:01 start_atlas.sh
[2025-11-24 03:48:59] -rw-r--r-- 2 boincer umatlas    590098 Nov 23 08:01 input.tar.gz
[2025-11-24 03:48:59] -rw------- 1 boincer umatlas 924538185 Nov 24 03:47 HITS.pool.root.1
[2025-11-24 03:48:59] -rw------- 1 boincer umatlas   8099840 Nov 24 03:48 result.tar.gz
03:49:01 (15573): run_atlas exited; CPU time 342110.702450
03:49:01 (15573): called boinc_finish(0)

</stderr_txt>
]]>

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