Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:07:09 (25503): wrapper (7.7.26015): starting
02:07:09 (25503): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 02:07:09] Arguments: --nthreads 8
[2025-11-26 02:07:09] Threads: 8
[2025-11-26 02:07:09] Checking for CVMFS
[2025-11-26 02:07:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 02:07:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 02:07:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 02:07:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 02:07:11] 2.11.2.0 14280 284526 142912 153303 3 278 13797812 25165825 2542 130560 10 151626340 99.893 79364814 2939 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 02:07:11] CVMFS is ok
[2025-11-26 02:07:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 02:07:11] Checking for apptainer binary...
[2025-11-26 02:07:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 02:07:11] Running /usr/bin/apptainer --version
[2025-11-26 02:07:11] apptainer version 1.3.2-1.el7
[2025-11-26 02:07:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 02:07:24] cg-vwn302.simple-grid.lan
[2025-11-26 02:07:24] apptainer works
[2025-11-26 02:07:24] Set ATHENA_PROC_NUMBER=8
[2025-11-26 02:07:24] Set ATHENA_CORE_NUMBER=8
[2025-11-26 02:07:24] Starting ATLAS job with PandaID=6893856544
[2025-11-26 02:07:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 02:18:16]  *** The last 200 lines of the pilot log: ***
[2025-11-27 02:18:16] 2025-11-27 01:17:27,878 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:18:16] 2025-11-27 01:17:27,970 | INFO     | time since job start (86760s) is within the limit (172800.0s)
[2025-11-27 02:18:16] 2025-11-27 01:17:29,977 | INFO     | time since job start (86762s) is within the limit (172800.0s)
[2025-11-27 02:18:16] 2025-11-27 01:17:30,382 | INFO     | monitor loop #5845: job 0:6893856544 is in state 'finished'
[2025-11-27 02:18:16] 2025-11-27 01:17:30,383 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:18:16] 2025-11-27 01:17:31,985 | INFO     | time since job start (86764s) is within the limit (172800.0s)
[2025-11-27 02:18:16] 2025-11-27 01:17:32,887 | INFO     | monitor loop #5846: job 0:6893856544 is in state 'finished'
[2025-11-27 02:18:16] 2025-11-27 01:17:32,888 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:18:16] 2025-11-27 01:17:33,992 | INFO     | time since job start (86766s) is within the limit (172800.0s)
[2025-11-27 02:18:16] 2025-11-27 01:17:35,393 | INFO     | monitor loop #5847: job 0:6893856544 is in state 'finished'
[2025-11-27 02:18:16] 2025-11-27 01:17:35,394 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:18:16] 2025-11-27 01:17:35,999 | INFO     | time since job start (86768s) is within the limit (172800.0s)
[2025-11-27 02:18:16] 2025-11-27 01:17:37,900 | INFO     | monitor loop #5848: job 0:6893856544 is in state 'finished'
[2025-11-27 02:18:16] 2025-11-27 01:17:37,901 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:18:16] 2025-11-27 01:17:38,006 | INFO     | time since job start (86771s) is within the limit (172800.0s)
[2025-11-27 02:18:16] 2025-11-27 01:17:39,053 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 02:18:16] 2025-11-27 01:17:39,054 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-11-27 02:18:16] 2025-11-27 01:17:39,055 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6893856544/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 02:18:16] 2025-11-27 01:17:39,056 | INFO     | extracted standard info from prmon json
[2025-11-27 02:18:16] 2025-11-27 01:17:39,056 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 02:18:16] 2025-11-27 01:17:39,056 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 02:18:16] 2025-11-27 01:17:39,095 | INFO     | fitting pss+swap vs Time
[2025-11-27 02:18:16] 2025-11-27 01:17:39,097 | INFO     | sum of square deviations: 872931974956.7996
[2025-11-27 02:18:16] 2025-11-27 01:17:39,216 | INFO     | sum of deviations: 2401068631393.783
[2025-11-27 02:18:16] 2025-11-27 01:17:39,216 | INFO     | mean x: 1764163056.5849857
[2025-11-27 02:18:16] 2025-11-27 01:17:39,216 | INFO     | mean y: 2853740.235127479
[2025-11-27 02:18:16] 2025-11-27 01:17:39,217 | INFO     | intersect: -4849616666.797006
[2025-11-27 02:18:16] 2025-11-27 01:17:39,218 | INFO     | chi2: 17.975390530058217
[2025-11-27 02:18:16] 2025-11-27 01:17:39,220 | INFO     | sum of square deviations: 863691841045.8954
[2025-11-27 02:18:16] 2025-11-27 01:17:39,297 | INFO     | sum of deviations: 2882065923142.47
[2025-11-27 02:18:16] 2025-11-27 01:17:39,298 | INFO     | mean x: 1764162904.0888414
[2025-11-27 02:18:16] 2025-11-27 01:17:39,298 | INFO     | mean y: 2861678.036247335
[2025-11-27 02:18:16] 2025-11-27 01:17:39,298 | INFO     | intersect: -5883999291.484395
[2025-11-27 02:18:16] 2025-11-27 01:17:39,299 | INFO     | chi2: 14.60194393728313
[2025-11-27 02:18:16] 2025-11-27 01:17:39,300 | INFO     | current chi2=14.60194393728313 (change=18.767028105086524 %)
[2025-11-27 02:18:16] 2025-11-27 01:17:39,300 | INFO     | right removable region: 1406
[2025-11-27 02:18:16] 2025-11-27 01:17:39,302 | INFO     | sum of square deviations: 863690906525.8959
[2025-11-27 02:18:16] 2025-11-27 01:17:39,359 | INFO     | sum of deviations: 1818754544515.7761
[2025-11-27 02:18:16] 2025-11-27 01:17:39,359 | INFO     | mean x: 1764163209.0888414
[2025-11-27 02:18:16] 2025-11-27 01:17:39,359 | INFO     | mean y: 2863348.6417910447
[2025-11-27 02:18:16] 2025-11-27 01:17:39,359 | INFO     | intersect: -3712099758.592989
[2025-11-27 02:18:16] 2025-11-27 01:17:39,361 | INFO     | chi2: 13.526036536876438
[2025-11-27 02:18:16] 2025-11-27 01:17:39,361 | INFO     | current chi2=13.526036536876438 (change=24.75247470001626 %)
[2025-11-27 02:18:16] 2025-11-27 01:17:39,361 | INFO     | left removable region: 10
[2025-11-27 02:18:16] 2025-11-27 01:17:39,363 | INFO     | sum of square deviations: 843591880180.1373
[2025-11-27 02:18:16] 2025-11-27 01:17:39,417 | INFO     | sum of deviations: 2164297058367.391
[2025-11-27 02:18:16] 2025-11-27 01:17:39,417 | INFO     | mean x: 1764163178.5959885
[2025-11-27 02:18:16] 2025-11-27 01:17:39,417 | INFO     | mean y: 2877421.1425501434
[2025-11-27 02:18:16] 2025-11-27 01:17:39,417 | INFO     | intersect: -4523213058.889152
[2025-11-27 02:18:16] 2025-11-27 01:17:39,419 | INFO     | chi2: 8.286976225720485
[2025-11-27 02:18:16] 2025-11-27 01:17:39,419 | INFO     | current memory leak: 2.57 B/s (using 1396 data points, chi2=8.29)
[2025-11-27 02:18:16] 2025-11-27 01:17:39,420 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-27 02:18:16] 2025-11-27 01:17:39,420 | INFO     | ..............................
[2025-11-27 02:18:16] 2025-11-27 01:17:39,420 | INFO     | . Timing measurements:
[2025-11-27 02:18:16] 2025-11-27 01:17:39,420 | INFO     | . get job = 0 s
[2025-11-27 02:18:16] 2025-11-27 01:17:39,421 | INFO     | . initial setup = 14 s
[2025-11-27 02:18:16] 2025-11-27 01:17:39,421 | INFO     | . payload setup = 180 s
[2025-11-27 02:18:16] 2025-11-27 01:17:39,421 | INFO     | . stage-in = 0 s
[2025-11-27 02:18:16] 2025-11-27 01:17:39,421 | INFO     | . payload execution = 86291 s
[2025-11-27 02:18:16] 2025-11-27 01:17:39,421 | INFO     | . stage-out = 5 s
[2025-11-27 02:18:16] 2025-11-27 01:17:39,421 | INFO     | . log creation = 2 s
[2025-11-27 02:18:16] 2025-11-27 01:17:39,421 | INFO     | ..............................
[2025-11-27 02:18:16] 2025-11-27 01:17:39,688 | INFO     | 
[2025-11-27 02:18:16] 2025-11-27 01:17:39,689 | INFO     | job summary report
[2025-11-27 02:18:16] 2025-11-27 01:17:39,689 | INFO     | --------------------------------------------------
[2025-11-27 02:18:16] 2025-11-27 01:17:39,689 | INFO     | PanDA job id: 6893856544
[2025-11-27 02:18:16] 2025-11-27 01:17:39,689 | INFO     | task id: 47523449
[2025-11-27 02:18:16] 2025-11-27 01:17:39,689 | INFO     | errors: (none)
[2025-11-27 02:18:16] 2025-11-27 01:17:39,689 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 02:18:16] 2025-11-27 01:17:39,689 | INFO     | pilot state: finished 
[2025-11-27 02:18:16] 2025-11-27 01:17:39,689 | INFO     | transexitcode: 0
[2025-11-27 02:18:16] 2025-11-27 01:17:39,689 | INFO     | exeerrorcode: 0
[2025-11-27 02:18:16] 2025-11-27 01:17:39,689 | INFO     | exeerrordiag: 
[2025-11-27 02:18:16] 2025-11-27 01:17:39,690 | INFO     | exitcode: 0
[2025-11-27 02:18:16] 2025-11-27 01:17:39,690 | INFO     | exitmsg: OK
[2025-11-27 02:18:16] 2025-11-27 01:17:39,690 | INFO     | cpuconsumptiontime: 326135 s
[2025-11-27 02:18:16] 2025-11-27 01:17:39,690 | INFO     | nevents: 1000
[2025-11-27 02:18:16] 2025-11-27 01:17:39,690 | INFO     | neventsw: 0
[2025-11-27 02:18:16] 2025-11-27 01:17:39,690 | INFO     | pid: 3510
[2025-11-27 02:18:16] 2025-11-27 01:17:39,690 | INFO     | pgrp: 3510
[2025-11-27 02:18:16] 2025-11-27 01:17:39,690 | INFO     | corecount: 8
[2025-11-27 02:18:16] 2025-11-27 01:17:39,690 | INFO     | event service: False
[2025-11-27 02:18:16] 2025-11-27 01:17:39,690 | INFO     | sizes: {0: 2283487, 1: 2284172, 2: 2284371, 13: 2284371, 23: 2284427, 34: 2284455, 45: 2284611, 56: 2284639, 66: 2284667, 77: 2284695, 88: 2284751, 97: 2285321, 99
[2025-11-27 02:18:16] 2025-11-27 01:17:39,690 | INFO     | --------------------------------------------------
[2025-11-27 02:18:16] 2025-11-27 01:17:39,690 | INFO     | 
[2025-11-27 02:18:16] 2025-11-27 01:17:39,691 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-27 02:18:16] 2025-11-27 01:17:40,014 | INFO     | time since job start (86773s) is within the limit (172800.0s)
[2025-11-27 02:18:16] 2025-11-27 01:17:40,022 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 02:18:16] 2025-11-27 01:17:40,022 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 02:18:16] 2025-11-27 01:17:40,022 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 02:18:16] 2025-11-27 01:17:40,022 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 02:18:16] 2025-11-27 01:17:40,022 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 02:18:16] 2025-11-27 01:17:40,022 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 02:18:16] 2025-11-27 01:17:40,023 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 02:18:16] 2025-11-27 01:17:40,023 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 02:18:16] 2025-11-27 01:17:40,023 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 02:18:16] 2025-11-27 01:17:40,023 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 02:18:16] 2025-11-27 01:17:40,023 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 02:18:16] 2025-11-27 01:17:40,023 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 02:18:16] 2025-11-27 01:17:40,023 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 02:18:16] 2025-11-27 01:17:40,023 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 02:18:16] 2025-11-27 01:17:40,023 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 02:18:16] 2025-11-27 01:17:40,024 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 02:18:16] 2025-11-27 01:17:40,024 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 02:18:16] 2025-11-27 01:17:40,024 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 02:18:16] 2025-11-27 01:17:40,024 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 02:18:16] 2025-11-27 01:17:40,024 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 02:18:16] 2025-11-27 01:17:40,024 | INFO     | job 6893856544 has completed (purged errors)
[2025-11-27 02:18:16] 2025-11-27 01:17:40,024 | INFO     | overall cleanup function is called
[2025-11-27 02:18:16] 2025-11-27 01:17:41,046 | INFO     | --- collectZombieJob: --- 10, [3510]
[2025-11-27 02:18:16] 2025-11-27 01:17:41,047 | INFO     | zombie collector waiting for pid 3510
[2025-11-27 02:18:16] 2025-11-27 01:17:41,047 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 02:18:16] 2025-11-27 01:17:41,047 | INFO     | collected zombie processes
[2025-11-27 02:18:16] 2025-11-27 01:17:41,047 | INFO     | will attempt to kill all subprocesses of pid=3510
[2025-11-27 02:18:16] 2025-11-27 01:17:41,174 | INFO     | process IDs to be killed: [3510] (in reverse order)
[2025-11-27 02:18:16] 2025-11-27 01:17:41,999 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 02:18:16] 2025-11-27 01:17:41,999 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 02:18:16] 2025-11-27 01:17:42,002 | INFO     | did not find any defunct processes belonging to 3510
[2025-11-27 02:18:16] 2025-11-27 01:17:42,004 | INFO     | did not find any defunct processes belonging to 3510
[2025-11-27 02:18:16] 2025-11-27 01:17:42,048 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 02:18:16] 2025-11-27 01:17:42,049 | INFO     | ready for new job
[2025-11-27 02:18:16] 2025-11-27 01:17:42,049 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 02:18:16] 2025-11-27 01:17:42,054 | INFO     | ***************************************
[2025-11-27 02:18:16] 2025-11-27 01:17:42,054 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 02:18:16] 2025-11-27 01:17:42,054 | INFO     | ***************************************
[2025-11-27 02:18:16] 2025-11-27 01:17:42,054 | INFO     | 
[2025-11-27 02:18:16] 2025-11-27 01:17:42,055 | INFO     | pilot is running in a VM
[2025-11-27 02:18:16] 2025-11-27 01:17:42,055 | INFO     | architecture information:
[2025-11-27 02:18:16] 2025-11-27 01:17:42,055 | INFO     | executing command: cat /etc/os-release
[2025-11-27 02:18:16] 2025-11-27 01:17:42,387 | INFO     | cat /etc/os-release:
[2025-11-27 02:18:16] NAME="CentOS Linux"
[2025-11-27 02:18:16] VERSION="7 (Core)"
[2025-11-27 02:18:16] ID="centos"
[2025-11-27 02:18:16] ID_LIKE="rhel fedora"
[2025-11-27 02:18:16] VERSION_ID="7"
[2025-11-27 02:18:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 02:18:16] ANSI_COLOR="0;31"
[2025-11-27 02:18:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 02:18:16] HOME_URL="https://www.centos.org/"
[2025-11-27 02:18:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 02:18:16] 
[2025-11-27 02:18:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 02:18:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 02:18:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 02:18:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 02:18:16] 
[2025-11-27 02:18:16] 2025-11-27 01:17:42,387 | INFO     | ***************************************
[2025-11-27 02:18:16] 2025-11-27 01:17:42,891 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-27 02:18:16] 2025-11-27 01:17:43,080 | INFO     | sufficient remaining disk space (495872638976 B)
[2025-11-27 02:18:16] 2025-11-27 01:17:43,081 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 02:18:16] 2025-11-27 01:17:43,081 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 02:18:16] 2025-11-27 01:17:43,081 | INFO     | update_server=False
[2025-11-27 02:18:16] 2025-11-27 01:17:43,081 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 02:18:16] 2025-11-27 01:17:43,081 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 02:18:16] 2025-11-27 01:17:43,464 | INFO     | all job control threads have been joined
[2025-11-27 02:18:16] 2025-11-27 01:17:43,506 | INFO     | all data control threads have been joined
[2025-11-27 02:18:16] 2025-11-27 01:17:43,844 | INFO     | all payload control threads have been joined
[2025-11-27 02:18:16] 2025-11-27 01:17:43,921 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:18:16] 2025-11-27 01:17:43,922 | INFO     | aborting loop
[2025-11-27 02:18:16] 2025-11-27 01:17:44,086 | INFO     | [job] retrieve thread has finished
[2025-11-27 02:18:16] 2025-11-27 01:17:44,143 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 02:18:16] 2025-11-27 01:17:44,387 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 02:18:16] 2025-11-27 01:17:44,470 | INFO     | [job] control thread has finished
[2025-11-27 02:18:16] 2025-11-27 01:17:44,512 | INFO     | [data] control thread has finished
[2025-11-27 02:18:16] 2025-11-27 01:17:44,533 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 02:18:16] 2025-11-27 01:17:44,553 | INFO     | [payload] failed_post thread has finished
[2025-11-27 02:18:16] 2025-11-27 01:17:44,555 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:18:16] 2025-11-27 01:17:44,650 | INFO     | [payload] validate_post thread has finished
[2025-11-27 02:18:16] 2025-11-27 01:17:44,656 | INFO     | [job] validate thread has finished
[2025-11-27 02:18:16] 2025-11-27 01:17:44,849 | INFO     | [payload] control thread has finished
[2025-11-27 02:18:16] 2025-11-27 01:17:44,927 | INFO     | [job] job monitor thread has finished
[2025-11-27 02:18:16] 2025-11-27 01:17:44,954 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 02:18:16] 2025-11-27 01:17:45,088 | INFO     | [data] copytool_out thread has finished
[2025-11-27 02:18:16] 2025-11-27 01:17:45,346 | INFO     | [data] copytool_in thread has finished
[2025-11-27 02:18:16] 2025-11-27 01:17:45,372 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 02:18:16] 2025-11-27 01:17:45,561 | INFO     | [job] queue monitor thread has finished
[2025-11-27 02:18:16] 2025-11-27 01:17:48,152 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 02:18:16] 2025-11-27 01:17:56,974 | INFO     | [monitor] cgroup control has ended
[2025-11-27 02:18:16] 2025-11-27 01:17:57,513 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140555844650816)>', '<ExcThread(monitor, started 140555254216448)>']
[2025-11-27 02:18:16] 2025-11-27 01:18:02,539 | INFO     | all workflow threads have been joined
[2025-11-27 02:18:16] 2025-11-27 01:18:02,540 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 02:18:16] 2025-11-27 01:18:02,540 | INFO     | traces error code: 0
[2025-11-27 02:18:16] 2025-11-27 01:18:02,540 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 02:18:16] 2025-11-27 01:18:13,172 | INFO     | PID=29312 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 02:18:16] 2025-11-27 01:18:13,172 | INFO     | .. there are 9 such processes running
[2025-11-27 02:18:16] 2025-11-27 01:18:13,172 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 02:18:16] 2025-11-27 01:18:13,172 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 02:18:16] 2025-11-27 01:18:13,172 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 02:18:16] 2025-11-27 01:18:13,173 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 02:18:16] 2025-11-27 01:18:13,173 | INFO     | [monitor] control thread has ended
[2025-11-27 02:18:16] 2025-11-27 01:18:13,498 [wrapper] ==== pilot stdout END ====
[2025-11-27 02:18:16] 2025-11-27 01:18:13,588 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 02:18:16] 2025-11-27 01:18:13,722 [wrapper] pilotpid: 29312
[2025-11-27 02:18:16] 2025-11-27 01:18:13,819 [wrapper] Pilot exit status: 0
[2025-11-27 02:18:16] 2025-11-27 01:18:14,058 [wrapper] pandaids: 6893856544
[2025-11-27 02:18:16] 2025-11-27 01:18:14,231 [wrapper] cleanup supervisor_pilot 32358 29313
[2025-11-27 02:18:16] 2025-11-27 01:18:14,234 [wrapper] Test setup, not cleaning
[2025-11-27 02:18:16] 2025-11-27 01:18:14,249 [wrapper] apfmon messages muted
[2025-11-27 02:18:16] 2025-11-27 01:18:14,307 [wrapper] ==== wrapper stdout END ====
[2025-11-27 02:18:16] 2025-11-27 01:18:14,386 [wrapper] ==== wrapper stderr END ====
[2025-11-27 02:18:16]  *** Error codes and diagnostics ***
[2025-11-27 02:18:16]     "exeErrorCode": 0,
[2025-11-27 02:18:16]     "exeErrorDiag": "",
[2025-11-27 02:18:16]     "pilotErrorCode": 0,
[2025-11-27 02:18:16]     "pilotErrorDiag": "",
[2025-11-27 02:18:16]  *** Listing of results directory ***
[2025-11-27 02:18:16] total 1341780
[2025-11-27 02:18:16] -rw-r--r--. 1 boinc boinc    576529 Nov 20 13:07 pilot3.tar.gz
[2025-11-27 02:18:16] -rw-r--r--. 1 boinc boinc      5112 Nov 20 13:54 queuedata.json
[2025-11-27 02:18:16] -rwx------. 1 boinc boinc     36292 Nov 20 13:54 runpilot2-wrapper.sh
[2025-11-27 02:18:16] -rw-r--r--. 1 boinc boinc       100 Nov 26 02:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 02:18:16] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 02:07 run_atlas
[2025-11-27 02:18:16] -rw-r--r--. 1 boinc boinc       105 Nov 26 02:07 job.xml
[2025-11-27 02:18:16] -rw-r--r--. 1 boinc boinc      6391 Nov 26 02:07 init_data.xml
[2025-11-27 02:18:16] -rw-r--r--. 2 boinc boinc 410582050 Nov 26 02:07 EVNT.47493127._000470.pool.root.1
[2025-11-27 02:18:16] -rw-r--r--. 2 boinc boinc     15847 Nov 26 02:07 start_atlas.sh
[2025-11-27 02:18:16] drwxrwx--x. 2 boinc boinc        68 Nov 26 02:07 shared
[2025-11-27 02:18:16] -rw-r--r--. 2 boinc boinc    590104 Nov 26 02:07 input.tar.gz
[2025-11-27 02:18:16] -rw-r--r--. 1 boinc boinc         0 Nov 26 02:07 boinc_lockfile
[2025-11-27 02:18:16] -rw-r--r--. 1 boinc boinc      2786 Nov 26 02:07 pandaJob.out
[2025-11-27 02:18:16] -rw-------. 1 boinc boinc    991877 Nov 26 02:11 agis_schedconf.cvmfs.json
[2025-11-27 02:18:16] drwx------. 5 boinc boinc      4096 Nov 26 02:11 pilot3
[2025-11-27 02:18:16] -rw-r--r--. 1 boinc boinc       533 Nov 27 01:49 boinc_task_state.xml
[2025-11-27 02:18:16] -rw-------. 1 boinc boinc 931489398 Nov 27 02:14 HITS.47523449._004698.pool.root.1
[2025-11-27 02:18:16] -rw-------. 1 boinc boinc      1031 Nov 27 02:15 memory_monitor_summary.json
[2025-11-27 02:18:16] -rw-------. 1 boinc boinc   1516240 Nov 27 02:15 agis_ddmendpoints.agis.ALL.json
[2025-11-27 02:18:16] -rw-------. 1 boinc boinc   2488848 Nov 27 02:16 log.47523449._004698.job.log.tgz.1
[2025-11-27 02:18:16] -rw-------. 1 boinc boinc        95 Nov 27 02:17 pilot_heartbeat.json
[2025-11-27 02:18:16] -rw-------. 1 boinc boinc      8621 Nov 27 02:17 heartbeat.json
[2025-11-27 02:18:16] -rw-r--r--. 1 boinc boinc      8192 Nov 27 02:17 boinc_mmap_file
[2025-11-27 02:18:16] -rw-r--r--. 1 boinc boinc        29 Nov 27 02:17 wrapper_checkpoint.txt
[2025-11-27 02:18:16] -rw-------. 1 boinc boinc       820 Nov 27 02:18 pilotlog.txt
[2025-11-27 02:18:16] -rw-------. 1 boinc boinc  11517713 Nov 27 02:18 log.47523449._004698.job.log.1
[2025-11-27 02:18:16] -rw-------. 1 boinc boinc       353 Nov 27 02:18 output.list
[2025-11-27 02:18:16] -rw-r--r--. 1 boinc boinc       620 Nov 27 02:18 runtime_log
[2025-11-27 02:18:16] -rw-------. 1 boinc boinc  14028800 Nov 27 02:18 result.tar.gz
[2025-11-27 02:18:16] -rw-r--r--. 1 boinc boinc      8817 Nov 27 02:18 runtime_log.err
[2025-11-27 02:18:16] -rw-------. 1 boinc boinc       662 Nov 27 02:18 iUzMDmVMJg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm0eGKDmzp436m.diag
[2025-11-27 02:18:16] -rw-r--r--. 1 boinc boinc     21445 Nov 27 02:18 stderr.txt
[2025-11-27 02:18:16] HITS file was successfully produced:
[2025-11-27 02:18:16] -rw-------. 1 boinc boinc 931489398 Nov 27 02:14 shared/HITS.pool.root.1
[2025-11-27 02:18:16]  *** Contents of shared directory: ***
[2025-11-27 02:18:16] total 1324916
[2025-11-27 02:18:16] -rw-r--r--. 2 boinc boinc 410582050 Nov 26 02:07 ATLAS.root_0
[2025-11-27 02:18:16] -rw-r--r--. 2 boinc boinc     15847 Nov 26 02:07 start_atlas.sh
[2025-11-27 02:18:16] -rw-r--r--. 2 boinc boinc    590104 Nov 26 02:07 input.tar.gz
[2025-11-27 02:18:16] -rw-------. 1 boinc boinc 931489398 Nov 27 02:14 HITS.pool.root.1
[2025-11-27 02:18:16] -rw-------. 1 boinc boinc  14028800 Nov 27 02:18 result.tar.gz
02:18:17 (25503): run_atlas exited; CPU time 326729.213128
02:18:17 (25503): called boinc_finish(0)

</stderr_txt>
]]>

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