Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:46:26 (31956): wrapper (7.7.26015): starting
23:46:26 (31956): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 23:46:26] Arguments: --nthreads 8
[2025-11-25 23:46:26] Threads: 8
[2025-11-25 23:46:26] Checking for CVMFS
[2025-11-25 23:46:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 23:46:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 23:46:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 23:46:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 23:46:28] 2.11.2.0 1205 284374 140740 153300 0 85 21192617 25165824 1027 130560 12 129985761 99.869 76386858 2698 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 23:46:28] CVMFS is ok
[2025-11-25 23:46:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 23:46:28] Checking for apptainer binary...
[2025-11-25 23:46:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 23:46:28] Running /usr/bin/apptainer --version
[2025-11-25 23:46:28] apptainer version 1.3.2-1.el7
[2025-11-25 23:46:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 23:46:44] cg-vwn325.simple-grid.lan
[2025-11-25 23:46:44] apptainer works
[2025-11-25 23:46:44] Set ATHENA_PROC_NUMBER=8
[2025-11-25 23:46:44] Set ATHENA_CORE_NUMBER=8
[2025-11-25 23:46:44] Starting ATLAS job with PandaID=6895342784
[2025-11-25 23:46:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:11:57]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:11:57] 2025-11-26 19:11:01,368 | INFO     | time since job start (73161s) is within the limit (172800.0s)
[2025-11-26 20:11:57] 2025-11-26 19:11:01,543 | INFO     | monitor loop #4992: job 0:6895342784 is in state 'finished'
[2025-11-26 20:11:57] 2025-11-26 19:11:01,543 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:11:57] 2025-11-26 19:11:03,376 | INFO     | time since job start (73163s) is within the limit (172800.0s)
[2025-11-26 20:11:57] 2025-11-26 19:11:04,056 | INFO     | monitor loop #4993: job 0:6895342784 is in state 'finished'
[2025-11-26 20:11:57] 2025-11-26 19:11:04,056 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:11:57] 2025-11-26 19:11:05,382 | INFO     | time since job start (73165s) is within the limit (172800.0s)
[2025-11-26 20:11:57] 2025-11-26 19:11:06,561 | INFO     | monitor loop #4994: job 0:6895342784 is in state 'finished'
[2025-11-26 20:11:57] 2025-11-26 19:11:06,561 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:11:57] 2025-11-26 19:11:07,389 | INFO     | time since job start (73167s) is within the limit (172800.0s)
[2025-11-26 20:11:57] 2025-11-26 19:11:09,066 | INFO     | monitor loop #4995: job 0:6895342784 is in state 'finished'
[2025-11-26 20:11:57] 2025-11-26 19:11:09,066 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:11:57] 2025-11-26 19:11:09,397 | INFO     | time since job start (73169s) is within the limit (172800.0s)
[2025-11-26 20:11:57] 2025-11-26 19:11:10,499 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 20:11:57] 2025-11-26 19:11:10,501 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 20:11:57] 2025-11-26 19:11:10,504 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6895342784/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:11:57] 2025-11-26 19:11:10,505 | INFO     | extracted standard info from prmon json
[2025-11-26 20:11:57] 2025-11-26 19:11:10,505 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:11:57] 2025-11-26 19:11:10,505 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:11:57] 2025-11-26 19:11:10,538 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:11:57] 2025-11-26 19:11:10,540 | INFO     | sum of square deviations: 521221392041.72723
[2025-11-26 20:11:57] 2025-11-26 19:11:10,607 | INFO     | sum of deviations: 1074571031993.9069
[2025-11-26 20:11:57] 2025-11-26 19:11:10,608 | INFO     | mean x: 1764147916.0151389
[2025-11-26 20:11:57] 2025-11-26 19:11:10,608 | INFO     | mean y: 2794266.8940285956
[2025-11-26 20:11:57] 2025-11-26 19:11:10,608 | INFO     | intersect: -3634244188.639132
[2025-11-26 20:11:57] 2025-11-26 19:11:10,610 | INFO     | chi2: 35.564464746929765
[2025-11-26 20:11:57] 2025-11-26 19:11:10,612 | INFO     | sum of square deviations: 514673804841.55273
[2025-11-26 20:11:57] 2025-11-26 19:11:10,677 | INFO     | sum of deviations: 1475607942531.5808
[2025-11-26 20:11:57] 2025-11-26 19:11:10,677 | INFO     | mean x: 1764147763.5194256
[2025-11-26 20:11:57] 2025-11-26 19:11:10,677 | INFO     | mean y: 2803605.322635135
[2025-11-26 20:11:57] 2025-11-26 19:11:10,678 | INFO     | intersect: -5055138779.077532
[2025-11-26 20:11:57] 2025-11-26 19:11:10,679 | INFO     | chi2: 31.96082960882394
[2025-11-26 20:11:57] 2025-11-26 19:11:10,679 | INFO     | current chi2=31.96082960882394 (change=10.132684868867381 %)
[2025-11-26 20:11:57] 2025-11-26 19:11:10,679 | INFO     | right removable region: 1183
[2025-11-26 20:11:57] 2025-11-26 19:11:10,681 | INFO     | sum of square deviations: 514673068571.553
[2025-11-26 20:11:57] 2025-11-26 19:11:10,746 | INFO     | sum of deviations: 570328484214.8431
[2025-11-26 20:11:57] 2025-11-26 19:11:10,747 | INFO     | mean x: 1764148068.5194256
[2025-11-26 20:11:57] 2025-11-26 19:11:10,747 | INFO     | mean y: 2806010.180743243
[2025-11-26 20:11:57] 2025-11-26 19:11:10,747 | INFO     | intersect: -1952112471.646419
[2025-11-26 20:11:57] 2025-11-26 19:11:10,748 | INFO     | chi2: 30.621504769161447
[2025-11-26 20:11:57] 2025-11-26 19:11:10,749 | INFO     | current chi2=30.621504769161447 (change=13.89859235318602 %)
[2025-11-26 20:11:57] 2025-11-26 19:11:10,749 | INFO     | left removable region: 10
[2025-11-26 20:11:57] 2025-11-26 19:11:10,751 | INFO     | sum of square deviations: 500461162229.01385
[2025-11-26 20:11:57] 2025-11-26 19:11:10,808 | INFO     | sum of deviations: 592864966772.8395
[2025-11-26 20:11:57] 2025-11-26 19:11:10,809 | INFO     | mean x: 1764148038.0289855
[2025-11-26 20:11:57] 2025-11-26 19:11:10,809 | INFO     | mean y: 2828328.916453538
[2025-11-26 20:11:57] 2025-11-26 19:11:10,809 | INFO     | intersect: -2087047263.6071756
[2025-11-26 20:11:57] 2025-11-26 19:11:10,810 | INFO     | chi2: 22.166591541304797
[2025-11-26 20:11:57] 2025-11-26 19:11:10,811 | INFO     | current memory leak: 1.18 B/s (using 1173 data points, chi2=22.17)
[2025-11-26 20:11:57] 2025-11-26 19:11:10,812 | INFO     | could have reported an average CPU frequency of 1999 MHz (41 samples)
[2025-11-26 20:11:57] 2025-11-26 19:11:10,813 | INFO     | ..............................
[2025-11-26 20:11:57] 2025-11-26 19:11:10,813 | INFO     | . Timing measurements:
[2025-11-26 20:11:57] 2025-11-26 19:11:10,813 | INFO     | . get job = 0 s
[2025-11-26 20:11:57] 2025-11-26 19:11:10,813 | INFO     | . initial setup = 16 s
[2025-11-26 20:11:57] 2025-11-26 19:11:10,813 | INFO     | . payload setup = 196 s
[2025-11-26 20:11:57] 2025-11-26 19:11:10,813 | INFO     | . stage-in = 0 s
[2025-11-26 20:11:57] 2025-11-26 19:11:10,813 | INFO     | . payload execution = 72630 s
[2025-11-26 20:11:57] 2025-11-26 19:11:10,813 | INFO     | . stage-out = 5 s
[2025-11-26 20:11:57] 2025-11-26 19:11:10,813 | INFO     | . log creation = 2 s
[2025-11-26 20:11:57] 2025-11-26 19:11:10,814 | INFO     | ..............................
[2025-11-26 20:11:57] 2025-11-26 19:11:11,075 | INFO     | 
[2025-11-26 20:11:57] 2025-11-26 19:11:11,075 | INFO     | job summary report
[2025-11-26 20:11:57] 2025-11-26 19:11:11,075 | INFO     | --------------------------------------------------
[2025-11-26 20:11:57] 2025-11-26 19:11:11,076 | INFO     | PanDA job id: 6895342784
[2025-11-26 20:11:57] 2025-11-26 19:11:11,076 | INFO     | task id: 47556137
[2025-11-26 20:11:57] 2025-11-26 19:11:11,076 | INFO     | errors: (none)
[2025-11-26 20:11:57] 2025-11-26 19:11:11,076 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:11:57] 2025-11-26 19:11:11,076 | INFO     | pilot state: finished 
[2025-11-26 20:11:57] 2025-11-26 19:11:11,076 | INFO     | transexitcode: 0
[2025-11-26 20:11:57] 2025-11-26 19:11:11,076 | INFO     | exeerrorcode: 0
[2025-11-26 20:11:57] 2025-11-26 19:11:11,076 | INFO     | exeerrordiag: 
[2025-11-26 20:11:57] 2025-11-26 19:11:11,076 | INFO     | exitcode: 0
[2025-11-26 20:11:57] 2025-11-26 19:11:11,077 | INFO     | exitmsg: OK
[2025-11-26 20:11:57] 2025-11-26 19:11:11,077 | INFO     | cpuconsumptiontime: 317676 s
[2025-11-26 20:11:57] 2025-11-26 19:11:11,077 | INFO     | nevents: 1000
[2025-11-26 20:11:57] 2025-11-26 19:11:11,077 | INFO     | neventsw: 0
[2025-11-26 20:11:57] 2025-11-26 19:11:11,077 | INFO     | pid: 9823
[2025-11-26 20:11:57] 2025-11-26 19:11:11,077 | INFO     | pgrp: 9823
[2025-11-26 20:11:57] 2025-11-26 19:11:11,077 | INFO     | corecount: 8
[2025-11-26 20:11:57] 2025-11-26 19:11:11,077 | INFO     | event service: False
[2025-11-26 20:11:57] 2025-11-26 19:11:11,077 | INFO     | sizes: {0: 2283385, 1: 2284071, 2: 2284270, 12: 2284270, 23: 2284298, 34: 2284326, 45: 2284482, 55: 2284510, 66: 2284538, 77: 2284566, 88: 2284622, 99: 2284930, 10
[2025-11-26 20:11:57] 2025-11-26 19:11:11,077 | INFO     | --------------------------------------------------
[2025-11-26 20:11:57] 2025-11-26 19:11:11,078 | INFO     | 
[2025-11-26 20:11:57] 2025-11-26 19:11:11,078 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-11-26 20:11:57] 2025-11-26 19:11:11,415 | INFO     | time since job start (73171s) is within the limit (172800.0s)
[2025-11-26 20:11:57] 2025-11-26 19:11:11,512 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:11:57] 2025-11-26 19:11:11,512 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:11:57] 2025-11-26 19:11:11,512 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:11:57] 2025-11-26 19:11:11,512 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:11:57] 2025-11-26 19:11:11,512 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:11:57] 2025-11-26 19:11:11,512 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:11:57] 2025-11-26 19:11:11,512 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:11:57] 2025-11-26 19:11:11,512 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:11:57] 2025-11-26 19:11:11,512 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:11:57] 2025-11-26 19:11:11,513 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:11:57] 2025-11-26 19:11:11,513 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:11:57] 2025-11-26 19:11:11,513 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:11:57] 2025-11-26 19:11:11,513 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:11:57] 2025-11-26 19:11:11,513 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:11:57] 2025-11-26 19:11:11,513 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:11:57] 2025-11-26 19:11:11,513 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:11:57] 2025-11-26 19:11:11,513 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:11:57] 2025-11-26 19:11:11,513 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:11:57] 2025-11-26 19:11:11,513 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:11:57] 2025-11-26 19:11:11,514 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:11:57] 2025-11-26 19:11:11,514 | INFO     | job 6895342784 has completed (purged errors)
[2025-11-26 20:11:57] 2025-11-26 19:11:11,514 | INFO     | overall cleanup function is called
[2025-11-26 20:11:57] 2025-11-26 19:11:12,529 | INFO     | --- collectZombieJob: --- 10, [9823]
[2025-11-26 20:11:57] 2025-11-26 19:11:12,529 | INFO     | zombie collector waiting for pid 9823
[2025-11-26 20:11:57] 2025-11-26 19:11:12,530 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:11:57] 2025-11-26 19:11:12,530 | INFO     | collected zombie processes
[2025-11-26 20:11:57] 2025-11-26 19:11:12,530 | INFO     | will attempt to kill all subprocesses of pid=9823
[2025-11-26 20:11:57] 2025-11-26 19:11:12,606 | INFO     | process IDs to be killed: [9823] (in reverse order)
[2025-11-26 20:11:57] 2025-11-26 19:11:13,237 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:11:57] 2025-11-26 19:11:13,237 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:11:57] 2025-11-26 19:11:13,239 | INFO     | did not find any defunct processes belonging to 9823
[2025-11-26 20:11:57] 2025-11-26 19:11:13,241 | INFO     | did not find any defunct processes belonging to 9823
[2025-11-26 20:11:57] 2025-11-26 19:11:13,253 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:11:57] 2025-11-26 19:11:13,253 | INFO     | ready for new job
[2025-11-26 20:11:57] 2025-11-26 19:11:13,253 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:11:57] 2025-11-26 19:11:13,258 | INFO     | ***************************************
[2025-11-26 20:11:57] 2025-11-26 19:11:13,258 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:11:57] 2025-11-26 19:11:13,258 | INFO     | ***************************************
[2025-11-26 20:11:57] 2025-11-26 19:11:13,258 | INFO     | 
[2025-11-26 20:11:57] 2025-11-26 19:11:13,259 | INFO     | pilot is running in a VM
[2025-11-26 20:11:57] 2025-11-26 19:11:13,259 | INFO     | architecture information:
[2025-11-26 20:11:57] 2025-11-26 19:11:13,264 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:11:57] 2025-11-26 19:11:13,319 | INFO     | cat /etc/os-release:
[2025-11-26 20:11:57] NAME="CentOS Linux"
[2025-11-26 20:11:57] VERSION="7 (Core)"
[2025-11-26 20:11:57] ID="centos"
[2025-11-26 20:11:57] ID_LIKE="rhel fedora"
[2025-11-26 20:11:57] VERSION_ID="7"
[2025-11-26 20:11:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:11:57] ANSI_COLOR="0;31"
[2025-11-26 20:11:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:11:57] HOME_URL="https://www.centos.org/"
[2025-11-26 20:11:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:11:57] 
[2025-11-26 20:11:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:11:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:11:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:11:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:11:57] 
[2025-11-26 20:11:57] 2025-11-26 19:11:13,319 | INFO     | ***************************************
[2025-11-26 20:11:57] 2025-11-26 19:11:13,822 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-11-26 20:11:57] 2025-11-26 19:11:14,061 | INFO     | sufficient remaining disk space (495435382784 B)
[2025-11-26 20:11:57] 2025-11-26 19:11:14,061 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:11:57] 2025-11-26 19:11:14,061 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:11:57] 2025-11-26 19:11:14,061 | INFO     | update_server=False
[2025-11-26 20:11:57] 2025-11-26 19:11:14,061 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:11:57] 2025-11-26 19:11:14,062 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:11:57] 2025-11-26 19:11:14,063 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:11:57] 2025-11-26 19:11:14,081 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 20:11:57] 2025-11-26 19:11:14,081 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 20:11:57] 2025-11-26 19:11:14,081 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:11:57] 2025-11-26 19:11:14,082 | INFO     | will abort loop
[2025-11-26 20:11:57] 2025-11-26 19:11:14,484 | INFO     | all payload control threads have been joined
[2025-11-26 20:11:57] 2025-11-26 19:11:14,625 | INFO     | all data control threads have been joined
[2025-11-26 20:11:57] 2025-11-26 19:11:15,067 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:11:57] 2025-11-26 19:11:15,087 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:11:57] 2025-11-26 19:11:15,143 | INFO     | all job control threads have been joined
[2025-11-26 20:11:57] 2025-11-26 19:11:15,490 | INFO     | [payload] control thread has finished
[2025-11-26 20:11:57] 2025-11-26 19:11:15,565 | INFO     | [job] validate thread has finished
[2025-11-26 20:11:57] 2025-11-26 19:11:15,575 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:11:57] 2025-11-26 19:11:15,632 | INFO     | [data] control thread has finished
[2025-11-26 20:11:57] 2025-11-26 19:11:15,752 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:11:57] 2025-11-26 19:11:15,832 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:11:57] 2025-11-26 19:11:15,964 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:11:57] 2025-11-26 19:11:16,028 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:11:57] 2025-11-26 19:11:16,069 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:11:57] 2025-11-26 19:11:16,149 | INFO     | [job] control thread has finished
[2025-11-26 20:11:57] 2025-11-26 19:11:16,299 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:11:57] 2025-11-26 19:11:16,459 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:11:57] 2025-11-26 19:11:16,469 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:11:57] 2025-11-26 19:11:16,970 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:11:57] 2025-11-26 19:11:18,071 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:11:57] 2025-11-26 19:11:44,567 | INFO     | PID=3322 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 20:11:57] 2025-11-26 19:11:44,567 | INFO     | .. there are 2 such processes running
[2025-11-26 20:11:57] 2025-11-26 19:11:44,568 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:11:57] 2025-11-26 19:11:44,568 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:11:57] 2025-11-26 19:11:44,568 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:11:57] 2025-11-26 19:11:46,276 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:11:57] 2025-11-26 19:11:47,695 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139854001002304)>', '<ExcThread(monitor, started 139853555541760)>']
[2025-11-26 20:11:57] 2025-11-26 19:11:48,590 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:11:57] 2025-11-26 19:11:48,590 | INFO     | [monitor] control thread has ended
[2025-11-26 20:11:57] 2025-11-26 19:11:52,721 | INFO     | all workflow threads have been joined
[2025-11-26 20:11:57] 2025-11-26 19:11:52,721 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:11:57] 2025-11-26 19:11:52,722 | INFO     | traces error code: 0
[2025-11-26 20:11:57] 2025-11-26 19:11:52,722 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:11:57] 2025-11-26 19:11:53,144 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:11:57] 2025-11-26 19:11:53,253 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:11:57] 2025-11-26 19:11:53,372 [wrapper] pilotpid: 3322
[2025-11-26 20:11:57] 2025-11-26 19:11:53,480 [wrapper] Pilot exit status: 0
[2025-11-26 20:11:57] 2025-11-26 19:11:53,946 [wrapper] pandaids: 6895342784
[2025-11-26 20:11:57] 2025-11-26 19:11:54,342 [wrapper] cleanup supervisor_pilot  9327 3323
[2025-11-26 20:11:57] 2025-11-26 19:11:54,443 [wrapper] Test setup, not cleaning
[2025-11-26 20:11:57] 2025-11-26 19:11:54,526 [wrapper] apfmon messages muted
[2025-11-26 20:11:57] 2025-11-26 19:11:54,636 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:11:57] 2025-11-26 19:11:54,747 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:11:57]  *** Error codes and diagnostics ***
[2025-11-26 20:11:57]     "exeErrorCode": 0,
[2025-11-26 20:11:57]     "exeErrorDiag": "",
[2025-11-26 20:11:57]     "pilotErrorCode": 0,
[2025-11-26 20:11:57]     "pilotErrorDiag": "",
[2025-11-26 20:11:57]  *** Listing of results directory ***
[2025-11-26 20:11:57] total 1306128
[2025-11-26 20:11:57] -rw-r--r--. 1 boinc boinc    576529 Nov 22 16:36 pilot3.tar.gz
[2025-11-26 20:11:57] -rw-r--r--. 1 boinc boinc      5112 Nov 22 16:42 queuedata.json
[2025-11-26 20:11:57] -rwx------. 1 boinc boinc     36292 Nov 22 16:43 runpilot2-wrapper.sh
[2025-11-26 20:11:57] -rw-r--r--. 1 boinc boinc       100 Nov 25 23:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:11:57] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 23:46 run_atlas
[2025-11-26 20:11:57] -rw-r--r--. 1 boinc boinc       105 Nov 25 23:46 job.xml
[2025-11-26 20:11:57] -rw-r--r--. 1 boinc boinc      6392 Nov 25 23:46 init_data.xml
[2025-11-26 20:11:57] -rw-r--r--. 2 boinc boinc 409529554 Nov 25 23:46 EVNT.47483658._000412.pool.root.1
[2025-11-26 20:11:57] -rw-r--r--. 2 boinc boinc     15847 Nov 25 23:46 start_atlas.sh
[2025-11-26 20:11:57] drwxrwx--x. 2 boinc boinc        68 Nov 25 23:46 shared
[2025-11-26 20:11:57] -rw-r--r--. 2 boinc boinc    590106 Nov 25 23:46 input.tar.gz
[2025-11-26 20:11:57] -rw-r--r--. 1 boinc boinc         0 Nov 25 23:46 boinc_lockfile
[2025-11-26 20:11:57] -rw-r--r--. 1 boinc boinc      2784 Nov 25 23:46 pandaJob.out
[2025-11-26 20:11:57] -rw-------. 1 boinc boinc    991877 Nov 25 23:51 agis_schedconf.cvmfs.json
[2025-11-26 20:11:57] drwx------. 5 boinc boinc      4096 Nov 25 23:51 pilot3
[2025-11-26 20:11:57] -rw-r--r--. 1 boinc boinc       533 Nov 26 19:32 boinc_task_state.xml
[2025-11-26 20:11:57] -rw-------. 1 boinc boinc 899728324 Nov 26 20:07 HITS.47556137._004075.pool.root.1
[2025-11-26 20:11:57] -rw-------. 1 boinc boinc      1034 Nov 26 20:09 memory_monitor_summary.json
[2025-11-26 20:11:57] -rw-------. 1 boinc boinc   1516240 Nov 26 20:09 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:11:57] -rw-------. 1 boinc boinc   2329254 Nov 26 20:09 log.47556137._004075.job.log.tgz.1
[2025-11-26 20:11:57] -rw-------. 1 boinc boinc        95 Nov 26 20:11 pilot_heartbeat.json
[2025-11-26 20:11:57] -rw-------. 1 boinc boinc      8621 Nov 26 20:11 heartbeat.json
[2025-11-26 20:11:57] -rw-r--r--. 1 boinc boinc      8192 Nov 26 20:11 boinc_mmap_file
[2025-11-26 20:11:57] -rw-------. 1 boinc boinc      5070 Nov 26 20:11 pilotlog.txt
[2025-11-26 20:11:57] -rw-r--r--. 1 boinc boinc        29 Nov 26 20:11 wrapper_checkpoint.txt
[2025-11-26 20:11:57] -rw-------. 1 boinc boinc   9825689 Nov 26 20:11 log.47556137._004075.job.log.1
[2025-11-26 20:11:57] -rw-------. 1 boinc boinc       353 Nov 26 20:11 output.list
[2025-11-26 20:11:57] -rw-r--r--. 1 boinc boinc       620 Nov 26 20:11 runtime_log
[2025-11-26 20:11:57] -rw-------. 1 boinc boinc  12175360 Nov 26 20:11 result.tar.gz
[2025-11-26 20:11:57] -rw-r--r--. 1 boinc boinc      8833 Nov 26 20:11 runtime_log.err
[2025-11-26 20:11:57] -rw-------. 1 boinc boinc       661 Nov 26 20:11 B27MDmww4g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmnEKKDmg0JUFn.diag
[2025-11-26 20:11:57] -rw-r--r--. 1 boinc boinc     21411 Nov 26 20:11 stderr.txt
[2025-11-26 20:11:57] HITS file was successfully produced:
[2025-11-26 20:11:57] -rw-------. 1 boinc boinc 899728324 Nov 26 20:07 shared/HITS.pool.root.1
[2025-11-26 20:11:57]  *** Contents of shared directory: ***
[2025-11-26 20:11:57] total 1291064
[2025-11-26 20:11:57] -rw-r--r--. 2 boinc boinc 409529554 Nov 25 23:46 ATLAS.root_0
[2025-11-26 20:11:57] -rw-r--r--. 2 boinc boinc     15847 Nov 25 23:46 start_atlas.sh
[2025-11-26 20:11:57] -rw-r--r--. 2 boinc boinc    590106 Nov 25 23:46 input.tar.gz
[2025-11-26 20:11:57] -rw-------. 1 boinc boinc 899728324 Nov 26 20:07 HITS.pool.root.1
[2025-11-26 20:11:57] -rw-------. 1 boinc boinc  12175360 Nov 26 20:11 result.tar.gz
20:11:59 (31956): run_atlas exited; CPU time 317864.653123
20:11:59 (31956): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN