Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:54:46 (22935): wrapper (7.7.26015): starting
22:54:46 (22935): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 22:54:46] Arguments: --nthreads 8
[2025-11-25 22:54:46] Threads: 8
[2025-11-25 22:54:46] Checking for CVMFS
[2025-11-25 22:54:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 22:54:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 22:54:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 22:54:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 22:54:48] 2.11.2.0 6427 171302 132212 153298 3 85 24380811 25165825 4632 130560 10 55265289 99.884 32067080 2459 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 22:54:48] CVMFS is ok
[2025-11-25 22:54:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 22:54:48] Checking for apptainer binary...
[2025-11-25 22:54:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 22:54:48] Running /usr/bin/apptainer --version
[2025-11-25 22:54:48] apptainer version 1.3.2-1.el7
[2025-11-25 22:54:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 22:54:57] cg-vwn308.simple-grid.lan
[2025-11-25 22:54:57] apptainer works
[2025-11-25 22:54:57] Set ATHENA_PROC_NUMBER=8
[2025-11-25 22:54:57] Set ATHENA_CORE_NUMBER=8
[2025-11-25 22:54:58] Starting ATLAS job with PandaID=6895334152
[2025-11-25 22:54:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 23:22:59]  *** The last 200 lines of the pilot log: ***
[2025-11-26 23:22:59] 2025-11-26 22:22:12,306 | INFO     | time since job start (87782s) is within the limit (172800.0s)
[2025-11-26 23:22:59] 2025-11-26 22:22:14,313 | INFO     | time since job start (87784s) is within the limit (172800.0s)
[2025-11-26 23:22:59] 2025-11-26 22:22:14,582 | INFO     | monitor loop #5902: job 0:6895334152 is in state 'finished'
[2025-11-26 23:22:59] 2025-11-26 22:22:14,583 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:22:59] 2025-11-26 22:22:16,320 | INFO     | time since job start (87786s) is within the limit (172800.0s)
[2025-11-26 23:22:59] 2025-11-26 22:22:17,087 | INFO     | monitor loop #5903: job 0:6895334152 is in state 'finished'
[2025-11-26 23:22:59] 2025-11-26 22:22:17,088 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:22:59] 2025-11-26 22:22:17,536 | INFO     | PID=26733 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 23:22:59] 2025-11-26 22:22:17,537 | INFO     | .. there are 9 such processes running
[2025-11-26 23:22:59] 2025-11-26 22:22:18,542 | INFO     | time since job start (87788s) is within the limit (172800.0s)
[2025-11-26 23:22:59] 2025-11-26 22:22:19,594 | INFO     | monitor loop #5904: job 0:6895334152 is in state 'finished'
[2025-11-26 23:22:59] 2025-11-26 22:22:19,595 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:22:59] 2025-11-26 22:22:20,552 | INFO     | time since job start (87790s) is within the limit (172800.0s)
[2025-11-26 23:22:59] 2025-11-26 22:22:21,895 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 23:22:59] 2025-11-26 22:22:21,896 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-11-26 23:22:59] 2025-11-26 22:22:21,898 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6895334152/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 23:22:59] 2025-11-26 22:22:21,899 | INFO     | extracted standard info from prmon json
[2025-11-26 23:22:59] 2025-11-26 22:22:21,900 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 23:22:59] 2025-11-26 22:22:21,900 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 23:22:59] 2025-11-26 22:22:21,927 | INFO     | fitting pss+swap vs Time
[2025-11-26 23:22:59] 2025-11-26 22:22:21,929 | INFO     | sum of square deviations: 904841138118.6908
[2025-11-26 23:22:59] 2025-11-26 22:22:22,011 | INFO     | sum of deviations: 2991253764294.412
[2025-11-26 23:22:59] 2025-11-26 22:22:22,012 | INFO     | mean x: 1764152030.10007
[2025-11-26 23:22:59] 2025-11-26 22:22:22,012 | INFO     | mean y: 2837814.836249125
[2025-11-26 23:22:59] 2025-11-26 22:22:22,012 | INFO     | intersect: -5829154320.044183
[2025-11-26 23:22:59] 2025-11-26 22:22:22,014 | INFO     | chi2: 25.368010217121252
[2025-11-26 23:22:59] 2025-11-26 22:22:22,016 | INFO     | sum of square deviations: 895376770342.6183
[2025-11-26 23:22:59] 2025-11-26 22:22:22,086 | INFO     | sum of deviations: 3475602824231.6445
[2025-11-26 23:22:59] 2025-11-26 22:22:22,087 | INFO     | mean x: 1764151877.6039326
[2025-11-26 23:22:59] 2025-11-26 22:22:22,087 | INFO     | mean y: 2845618.313202247
[2025-11-26 23:22:59] 2025-11-26 22:22:22,087 | INFO     | intersect: -6845099795.579494
[2025-11-26 23:22:59] 2025-11-26 22:22:22,089 | INFO     | chi2: 21.96229599762042
[2025-11-26 23:22:59] 2025-11-26 22:22:22,089 | INFO     | current chi2=21.96229599762042 (change=13.42523197661859 %)
[2025-11-26 23:22:59] 2025-11-26 22:22:22,089 | INFO     | right removable region: 1423
[2025-11-26 23:22:59] 2025-11-26 22:22:22,091 | INFO     | sum of square deviations: 895375811422.618
[2025-11-26 23:22:59] 2025-11-26 22:22:22,128 | INFO     | monitor loop #5905: job 0:6895334152 is in state 'finished'
[2025-11-26 23:22:59] 2025-11-26 22:22:22,129 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:22:59] 2025-11-26 22:22:22,162 | INFO     | sum of deviations: 2384485191597.4136
[2025-11-26 23:22:59] 2025-11-26 22:22:22,162 | INFO     | mean x: 1764152182.6039326
[2025-11-26 23:22:59] 2025-11-26 22:22:22,162 | INFO     | mean y: 2847590.5681179776
[2025-11-26 23:22:59] 2025-11-26 22:22:22,163 | INFO     | intersect: -4695285530.159908
[2025-11-26 23:22:59] 2025-11-26 22:22:22,164 | INFO     | chi2: 20.571186708439193
[2025-11-26 23:22:59] 2025-11-26 22:22:22,164 | INFO     | current chi2=20.571186708439193 (change=18.90894661278799 %)
[2025-11-26 23:22:59] 2025-11-26 22:22:22,165 | INFO     | left removable region: 10
[2025-11-26 23:22:59] 2025-11-26 22:22:22,167 | INFO     | sum of square deviations: 874786058923.1084
[2025-11-26 23:22:59] 2025-11-26 22:22:22,227 | INFO     | sum of deviations: 2468435051221.409
[2025-11-26 23:22:59] 2025-11-26 22:22:22,228 | INFO     | mean x: 1764152152.1125267
[2025-11-26 23:22:59] 2025-11-26 22:22:22,228 | INFO     | mean y: 2865626.6829440906
[2025-11-26 23:22:59] 2025-11-26 22:22:22,228 | INFO     | intersect: -4975145812.277369
[2025-11-26 23:22:59] 2025-11-26 22:22:22,230 | INFO     | chi2: 12.938755056183131
[2025-11-26 23:22:59] 2025-11-26 22:22:22,230 | INFO     | current memory leak: 2.82 B/s (using 1413 data points, chi2=12.94)
[2025-11-26 23:22:59] 2025-11-26 22:22:22,231 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-26 23:22:59] 2025-11-26 22:22:22,232 | INFO     | ..............................
[2025-11-26 23:22:59] 2025-11-26 22:22:22,232 | INFO     | . Timing measurements:
[2025-11-26 23:22:59] 2025-11-26 22:22:22,232 | INFO     | . get job = 0 s
[2025-11-26 23:22:59] 2025-11-26 22:22:22,232 | INFO     | . initial setup = 14 s
[2025-11-26 23:22:59] 2025-11-26 22:22:22,232 | INFO     | . payload setup = 170 s
[2025-11-26 23:22:59] 2025-11-26 22:22:22,232 | INFO     | . stage-in = 0 s
[2025-11-26 23:22:59] 2025-11-26 22:22:22,232 | INFO     | . payload execution = 87311 s
[2025-11-26 23:22:59] 2025-11-26 22:22:22,233 | INFO     | . stage-out = 4 s
[2025-11-26 23:22:59] 2025-11-26 22:22:22,233 | INFO     | . log creation = 1 s
[2025-11-26 23:22:59] 2025-11-26 22:22:22,233 | INFO     | ..............................
[2025-11-26 23:22:59] 2025-11-26 22:22:22,377 | INFO     | 
[2025-11-26 23:22:59] 2025-11-26 22:22:22,378 | INFO     | job summary report
[2025-11-26 23:22:59] 2025-11-26 22:22:22,378 | INFO     | --------------------------------------------------
[2025-11-26 23:22:59] 2025-11-26 22:22:22,378 | INFO     | PanDA job id: 6895334152
[2025-11-26 23:22:59] 2025-11-26 22:22:22,378 | INFO     | task id: 47556137
[2025-11-26 23:22:59] 2025-11-26 22:22:22,378 | INFO     | errors: (none)
[2025-11-26 23:22:59] 2025-11-26 22:22:22,378 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 23:22:59] 2025-11-26 22:22:22,378 | INFO     | pilot state: finished 
[2025-11-26 23:22:59] 2025-11-26 22:22:22,378 | INFO     | transexitcode: 0
[2025-11-26 23:22:59] 2025-11-26 22:22:22,378 | INFO     | exeerrorcode: 0
[2025-11-26 23:22:59] 2025-11-26 22:22:22,379 | INFO     | exeerrordiag: 
[2025-11-26 23:22:59] 2025-11-26 22:22:22,379 | INFO     | exitcode: 0
[2025-11-26 23:22:59] 2025-11-26 22:22:22,379 | INFO     | exitmsg: OK
[2025-11-26 23:22:59] 2025-11-26 22:22:22,379 | INFO     | cpuconsumptiontime: 328533 s
[2025-11-26 23:22:59] 2025-11-26 22:22:22,379 | INFO     | nevents: 1000
[2025-11-26 23:22:59] 2025-11-26 22:22:22,379 | INFO     | neventsw: 0
[2025-11-26 23:22:59] 2025-11-26 22:22:22,379 | INFO     | pid: 1088
[2025-11-26 23:22:59] 2025-11-26 22:22:22,379 | INFO     | pgrp: 1088
[2025-11-26 23:22:59] 2025-11-26 22:22:22,379 | INFO     | corecount: 8
[2025-11-26 23:22:59] 2025-11-26 22:22:22,380 | INFO     | event service: False
[2025-11-26 23:22:59] 2025-11-26 22:22:22,380 | INFO     | sizes: {0: 2283436, 1: 2284121, 2: 2284320, 13: 2284320, 23: 2284376, 34: 2284404, 45: 2284560, 56: 2284588, 66: 2284616, 77: 2284644, 88: 2284700, 98: 2285008, 10
[2025-11-26 23:22:59] 2025-11-26 22:22:22,380 | INFO     | --------------------------------------------------
[2025-11-26 23:22:59] 2025-11-26 22:22:22,380 | INFO     | 
[2025-11-26 23:22:59] 2025-11-26 22:22:22,380 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-26 23:22:59] 2025-11-26 22:22:22,562 | INFO     | time since job start (87792s) is within the limit (172800.0s)
[2025-11-26 23:22:59] 2025-11-26 22:22:22,911 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 23:22:59] 2025-11-26 22:22:22,911 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 23:22:59] 2025-11-26 22:22:22,911 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 23:22:59] 2025-11-26 22:22:22,911 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 23:22:59] 2025-11-26 22:22:22,911 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 23:22:59] 2025-11-26 22:22:22,911 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 23:22:59] 2025-11-26 22:22:22,911 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 23:22:59] 2025-11-26 22:22:22,911 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 23:22:59] 2025-11-26 22:22:22,912 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 23:22:59] 2025-11-26 22:22:22,912 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 23:22:59] 2025-11-26 22:22:22,912 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 23:22:59] 2025-11-26 22:22:22,912 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 23:22:59] 2025-11-26 22:22:22,912 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 23:22:59] 2025-11-26 22:22:22,912 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 23:22:59] 2025-11-26 22:22:22,912 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 23:22:59] 2025-11-26 22:22:22,912 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 23:22:59] 2025-11-26 22:22:22,912 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 23:22:59] 2025-11-26 22:22:22,912 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 23:22:59] 2025-11-26 22:22:22,912 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 23:22:59] 2025-11-26 22:22:22,913 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 23:22:59] 2025-11-26 22:22:22,913 | INFO     | job 6895334152 has completed (purged errors)
[2025-11-26 23:22:59] 2025-11-26 22:22:22,913 | INFO     | overall cleanup function is called
[2025-11-26 23:22:59] 2025-11-26 22:22:23,935 | INFO     | --- collectZombieJob: --- 10, [1088]
[2025-11-26 23:22:59] 2025-11-26 22:22:23,936 | INFO     | zombie collector waiting for pid 1088
[2025-11-26 23:22:59] 2025-11-26 22:22:23,936 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 23:22:59] 2025-11-26 22:22:23,936 | INFO     | collected zombie processes
[2025-11-26 23:22:59] 2025-11-26 22:22:23,936 | INFO     | will attempt to kill all subprocesses of pid=1088
[2025-11-26 23:22:59] 2025-11-26 22:22:24,043 | INFO     | process IDs to be killed: [1088] (in reverse order)
[2025-11-26 23:22:59] 2025-11-26 22:22:24,129 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 23:22:59] 2025-11-26 22:22:24,129 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 23:22:59] 2025-11-26 22:22:24,132 | INFO     | did not find any defunct processes belonging to 1088
[2025-11-26 23:22:59] 2025-11-26 22:22:24,135 | INFO     | did not find any defunct processes belonging to 1088
[2025-11-26 23:22:59] 2025-11-26 22:22:24,137 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 23:22:59] 2025-11-26 22:22:24,137 | INFO     | ready for new job
[2025-11-26 23:22:59] 2025-11-26 22:22:24,137 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 23:22:59] 2025-11-26 22:22:24,142 | INFO     | ***************************************
[2025-11-26 23:22:59] 2025-11-26 22:22:24,143 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 23:22:59] 2025-11-26 22:22:24,143 | INFO     | ***************************************
[2025-11-26 23:22:59] 2025-11-26 22:22:24,143 | INFO     | 
[2025-11-26 23:22:59] 2025-11-26 22:22:24,143 | INFO     | pilot is running in a VM
[2025-11-26 23:22:59] 2025-11-26 22:22:24,143 | INFO     | architecture information:
[2025-11-26 23:22:59] 2025-11-26 22:22:24,144 | INFO     | executing command: cat /etc/os-release
[2025-11-26 23:22:59] 2025-11-26 22:22:24,157 | INFO     | cat /etc/os-release:
[2025-11-26 23:22:59] NAME="CentOS Linux"
[2025-11-26 23:22:59] VERSION="7 (Core)"
[2025-11-26 23:22:59] ID="centos"
[2025-11-26 23:22:59] ID_LIKE="rhel fedora"
[2025-11-26 23:22:59] VERSION_ID="7"
[2025-11-26 23:22:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 23:22:59] ANSI_COLOR="0;31"
[2025-11-26 23:22:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 23:22:59] HOME_URL="https://www.centos.org/"
[2025-11-26 23:22:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 23:22:59] 
[2025-11-26 23:22:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 23:22:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 23:22:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 23:22:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 23:22:59] 
[2025-11-26 23:22:59] 2025-11-26 22:22:24,158 | INFO     | ***************************************
[2025-11-26 23:22:59] 2025-11-26 22:22:24,661 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-26 23:22:59] 2025-11-26 22:22:24,899 | INFO     | sufficient remaining disk space (495726886912 B)
[2025-11-26 23:22:59] 2025-11-26 22:22:24,899 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 23:22:59] 2025-11-26 22:22:24,899 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 23:22:59] 2025-11-26 22:22:24,899 | INFO     | update_server=False
[2025-11-26 23:22:59] 2025-11-26 22:22:24,900 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 23:22:59] 2025-11-26 22:22:24,900 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 23:22:59] 2025-11-26 22:22:24,936 | INFO     | all payload control threads have been joined
[2025-11-26 23:22:59] 2025-11-26 22:22:25,625 | INFO     | all data control threads have been joined
[2025-11-26 23:22:59] 2025-11-26 22:22:25,653 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:22:59] 2025-11-26 22:22:25,654 | INFO     | aborting loop
[2025-11-26 23:22:59] 2025-11-26 22:22:25,768 | INFO     | all job control threads have been joined
[2025-11-26 23:22:59] 2025-11-26 22:22:25,905 | INFO     | [job] retrieve thread has finished
[2025-11-26 23:22:59] 2025-11-26 22:22:25,942 | INFO     | [payload] control thread has finished
[2025-11-26 23:22:59] 2025-11-26 22:22:26,127 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 23:22:59] 2025-11-26 22:22:26,210 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 23:22:59] 2025-11-26 22:22:26,292 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 23:22:59] 2025-11-26 22:22:26,405 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 23:22:59] 2025-11-26 22:22:26,453 | INFO     | [job] validate thread has finished
[2025-11-26 23:22:59] 2025-11-26 22:22:26,631 | INFO     | [data] control thread has finished
[2025-11-26 23:22:59] 2025-11-26 22:22:26,659 | INFO     | [job] job monitor thread has finished
[2025-11-26 23:22:59] 2025-11-26 22:22:26,749 | INFO     | [data] copytool_in thread has finished
[2025-11-26 23:22:59] 2025-11-26 22:22:26,774 | INFO     | [job] control thread has finished
[2025-11-26 23:22:59] 2025-11-26 22:22:26,792 | INFO     | [payload] failed_post thread has finished
[2025-11-26 23:22:59] 2025-11-26 22:22:26,907 | INFO     | [data] copytool_out thread has finished
[2025-11-26 23:22:59] 2025-11-26 22:22:27,282 | INFO     | [payload] validate_post thread has finished
[2025-11-26 23:22:59] 2025-11-26 22:22:27,391 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:22:59] 2025-11-26 22:22:27,547 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 23:22:59] 2025-11-26 22:22:28,397 | INFO     | [job] queue monitor thread has finished
[2025-11-26 23:22:59] 2025-11-26 22:22:31,556 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 23:22:59] 2025-11-26 22:22:42,918 | INFO     | [monitor] cgroup control has ended
[2025-11-26 23:22:59] 2025-11-26 22:22:44,946 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139783765505856)>', '<ExcThread(monitor, started 139783546980096)>']
[2025-11-26 23:22:59] 2025-11-26 22:22:49,972 | INFO     | all workflow threads have been joined
[2025-11-26 23:22:59] 2025-11-26 22:22:49,973 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 23:22:59] 2025-11-26 22:22:49,973 | INFO     | traces error code: 0
[2025-11-26 23:22:59] 2025-11-26 22:22:49,973 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 23:22:59] 2025-11-26 22:22:55,712 | INFO     | PID=26733 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 23:22:59] 2025-11-26 22:22:55,713 | INFO     | .. there are 9 such processes running
[2025-11-26 23:22:59] 2025-11-26 22:22:55,713 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 23:22:59] 2025-11-26 22:22:55,713 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 23:22:59] 2025-11-26 22:22:55,713 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 23:22:59] 2025-11-26 22:22:55,713 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 23:22:59] 2025-11-26 22:22:55,713 | INFO     | [monitor] control thread has ended
[2025-11-26 23:22:59] 2025-11-26 22:22:55,844 [wrapper] ==== pilot stdout END ====
[2025-11-26 23:22:59] 2025-11-26 22:22:55,877 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 23:22:59] 2025-11-26 22:22:55,887 [wrapper] pilotpid: 26733
[2025-11-26 23:22:59] 2025-11-26 22:22:55,901 [wrapper] Pilot exit status: 0
[2025-11-26 23:22:59] 2025-11-26 22:22:56,275 [wrapper] pandaids: 6895334152
[2025-11-26 23:22:59] 2025-11-26 22:22:56,633 [wrapper] cleanup supervisor_pilot  3800 26734
[2025-11-26 23:22:59] 2025-11-26 22:22:56,708 [wrapper] Test setup, not cleaning
[2025-11-26 23:22:59] 2025-11-26 22:22:56,779 [wrapper] apfmon messages muted
[2025-11-26 23:22:59] 2025-11-26 22:22:56,855 [wrapper] ==== wrapper stdout END ====
[2025-11-26 23:22:59] 2025-11-26 22:22:56,950 [wrapper] ==== wrapper stderr END ====
[2025-11-26 23:22:59]  *** Error codes and diagnostics ***
[2025-11-26 23:22:59]     "exeErrorCode": 0,
[2025-11-26 23:22:59]     "exeErrorDiag": "",
[2025-11-26 23:22:59]     "pilotErrorCode": 0,
[2025-11-26 23:22:59]     "pilotErrorDiag": "",
[2025-11-26 23:22:59]  *** Listing of results directory ***
[2025-11-26 23:22:59] total 1338892
[2025-11-26 23:22:59] -rw-r--r--. 1 boinc boinc    576529 Nov 22 03:56 pilot3.tar.gz
[2025-11-26 23:22:59] -rwx------. 1 boinc boinc     36292 Nov 22 04:06 runpilot2-wrapper.sh
[2025-11-26 23:22:59] -rw-r--r--. 1 boinc boinc      5112 Nov 22 04:06 queuedata.json
[2025-11-26 23:22:59] -rw-r--r--. 1 boinc boinc       100 Nov 25 22:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 23:22:59] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 22:54 run_atlas
[2025-11-26 23:22:59] -rw-r--r--. 1 boinc boinc       105 Nov 25 22:54 job.xml
[2025-11-26 23:22:59] -rw-r--r--. 1 boinc boinc      6391 Nov 25 22:54 init_data.xml
[2025-11-26 23:22:59] -rw-r--r--. 2 boinc boinc 409768931 Nov 25 22:54 EVNT.47483658._000229.pool.root.1
[2025-11-26 23:22:59] -rw-r--r--. 2 boinc boinc     15847 Nov 25 22:54 start_atlas.sh
[2025-11-26 23:22:59] drwxrwx--x. 2 boinc boinc        68 Nov 25 22:54 shared
[2025-11-26 23:22:59] -rw-r--r--. 2 boinc boinc    590093 Nov 25 22:54 input.tar.gz
[2025-11-26 23:22:59] -rw-r--r--. 1 boinc boinc         0 Nov 25 22:54 boinc_lockfile
[2025-11-26 23:22:59] -rw-r--r--. 1 boinc boinc      2785 Nov 25 22:54 pandaJob.out
[2025-11-26 23:22:59] -rw-------. 1 boinc boinc    991893 Nov 25 22:59 agis_schedconf.cvmfs.json
[2025-11-26 23:22:59] drwx------. 5 boinc boinc      4096 Nov 25 22:59 pilot3
[2025-11-26 23:22:59] -rw-r--r--. 1 boinc boinc       533 Nov 26 22:56 boinc_task_state.xml
[2025-11-26 23:22:59] -rw-------. 1 boinc boinc 928981400 Nov 26 23:19 HITS.47556137._002252.pool.root.1
[2025-11-26 23:22:59] -rw-------. 1 boinc boinc      1030 Nov 26 23:20 memory_monitor_summary.json
[2025-11-26 23:22:59] -rw-------. 1 boinc boinc   1516240 Nov 26 23:20 agis_ddmendpoints.agis.ALL.json
[2025-11-26 23:22:59] -rw-------. 1 boinc boinc   2507714 Nov 26 23:20 log.47556137._002252.job.log.tgz.1
[2025-11-26 23:22:59] -rw-------. 1 boinc boinc        95 Nov 26 23:21 pilot_heartbeat.json
[2025-11-26 23:22:59] -rw-------. 1 boinc boinc      8629 Nov 26 23:22 heartbeat.json
[2025-11-26 23:22:59] -rw-r--r--. 1 boinc boinc      8192 Nov 26 23:22 boinc_mmap_file
[2025-11-26 23:22:59] -rw-r--r--. 1 boinc boinc        29 Nov 26 23:22 wrapper_checkpoint.txt
[2025-11-26 23:22:59] -rw-------. 1 boinc boinc       820 Nov 26 23:22 pilotlog.txt
[2025-11-26 23:22:59] -rw-------. 1 boinc boinc  11675200 Nov 26 23:22 log.47556137._002252.job.log.1
[2025-11-26 23:22:59] -rw-------. 1 boinc boinc       353 Nov 26 23:22 output.list
[2025-11-26 23:22:59] -rw-r--r--. 1 boinc boinc       620 Nov 26 23:22 runtime_log
[2025-11-26 23:22:59] -rw-------. 1 boinc boinc  14202880 Nov 26 23:22 result.tar.gz
[2025-11-26 23:22:59] -rw-------. 1 boinc boinc       662 Nov 26 23:22 WcfMDms8sg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAvHKDmQxDyAn.diag
[2025-11-26 23:22:59] -rw-r--r--. 1 boinc boinc      8817 Nov 26 23:22 runtime_log.err
[2025-11-26 23:22:59] -rw-r--r--. 1 boinc boinc     21502 Nov 26 23:22 stderr.txt
[2025-11-26 23:22:59] HITS file was successfully produced:
[2025-11-26 23:22:59] -rw-------. 1 boinc boinc 928981400 Nov 26 23:19 shared/HITS.pool.root.1
[2025-11-26 23:22:59]  *** Contents of shared directory: ***
[2025-11-26 23:22:59] total 1321848
[2025-11-26 23:22:59] -rw-r--r--. 2 boinc boinc 409768931 Nov 25 22:54 ATLAS.root_0
[2025-11-26 23:22:59] -rw-r--r--. 2 boinc boinc     15847 Nov 25 22:54 start_atlas.sh
[2025-11-26 23:22:59] -rw-r--r--. 2 boinc boinc    590093 Nov 25 22:54 input.tar.gz
[2025-11-26 23:22:59] -rw-------. 1 boinc boinc 928981400 Nov 26 23:19 HITS.pool.root.1
[2025-11-26 23:22:59] -rw-------. 1 boinc boinc  14202880 Nov 26 23:22 result.tar.gz
23:23:01 (22935): run_atlas exited; CPU time 329156.268426
23:23:01 (22935): called boinc_finish(0)

</stderr_txt>
]]>

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