Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:20:16 (32533): wrapper (7.7.26015): starting
00:20:16 (32533): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:20:16] Arguments: --nthreads 8
[2025-11-26 00:20:16] Threads: 8
[2025-11-26 00:20:16] Checking for CVMFS
[2025-11-26 00:20:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:20:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:20:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:20:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:20:18] 2.11.2.0 16343 284420 135648 153302 0 62 17152713 25165825 4632 130560 14 140398062 99.871 76572631 2678 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 00:20:18] CVMFS is ok
[2025-11-26 00:20:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:20:18] Checking for apptainer binary...
[2025-11-26 00:20:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:20:18] Running /usr/bin/apptainer --version
[2025-11-26 00:20:18] apptainer version 1.3.2-1.el7
[2025-11-26 00:20:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:20:25] cg-vwn436.simple-grid.lan
[2025-11-26 00:20:25] apptainer works
[2025-11-26 00:20:26] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:20:26] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:20:26] Starting ATLAS job with PandaID=6895342766
[2025-11-26 00:20:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 00:16:07]  *** The last 200 lines of the pilot log: ***
[2025-11-27 00:16:07] 2025-11-26 23:15:19,114 | INFO     | time since job start (85863s) is within the limit (172800.0s)
[2025-11-27 00:16:07] 2025-11-26 23:15:20,412 | INFO     | monitor loop #5790: job 0:6895342766 is in state 'finished'
[2025-11-27 00:16:07] 2025-11-26 23:15:20,412 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:16:07] 2025-11-26 23:15:21,123 | INFO     | time since job start (85865s) is within the limit (172800.0s)
[2025-11-27 00:16:07] 2025-11-26 23:15:22,919 | INFO     | monitor loop #5791: job 0:6895342766 is in state 'finished'
[2025-11-27 00:16:07] 2025-11-26 23:15:22,919 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:16:07] 2025-11-26 23:15:23,135 | INFO     | time since job start (85867s) is within the limit (172800.0s)
[2025-11-27 00:16:07] 2025-11-26 23:15:25,145 | INFO     | time since job start (85869s) is within the limit (172800.0s)
[2025-11-27 00:16:07] 2025-11-26 23:15:25,424 | INFO     | monitor loop #5792: job 0:6895342766 is in state 'finished'
[2025-11-27 00:16:07] 2025-11-26 23:15:25,424 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:16:07] 2025-11-26 23:15:27,158 | INFO     | time since job start (85871s) is within the limit (172800.0s)
[2025-11-27 00:16:07] 2025-11-26 23:15:27,931 | INFO     | monitor loop #5793: job 0:6895342766 is in state 'finished'
[2025-11-27 00:16:07] 2025-11-26 23:15:27,931 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:16:07] 2025-11-26 23:15:29,165 | INFO     | time since job start (85873s) is within the limit (172800.0s)
[2025-11-27 00:16:07] 2025-11-26 23:15:29,541 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 00:16:07] 2025-11-26 23:15:29,544 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 00:16:07] 2025-11-26 23:15:29,546 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6895342766/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 00:16:07] 2025-11-26 23:15:29,547 | INFO     | extracted standard info from prmon json
[2025-11-27 00:16:07] 2025-11-26 23:15:29,547 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 00:16:07] 2025-11-26 23:15:29,554 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 00:16:07] 2025-11-26 23:15:29,597 | INFO     | fitting pss+swap vs Time
[2025-11-27 00:16:07] 2025-11-26 23:15:29,605 | INFO     | sum of square deviations: 847223729981.4813
[2025-11-27 00:16:07] 2025-11-26 23:15:29,676 | INFO     | sum of deviations: 3761358515678.586
[2025-11-27 00:16:07] 2025-11-26 23:15:29,676 | INFO     | mean x: 1764156188.600143
[2025-11-27 00:16:07] 2025-11-26 23:15:29,677 | INFO     | mean y: 2839112.0386266094
[2025-11-27 00:16:07] 2025-11-26 23:15:29,677 | INFO     | intersect: -7829358769.297001
[2025-11-27 00:16:07] 2025-11-26 23:15:29,679 | INFO     | chi2: 23.282202411702944
[2025-11-27 00:16:07] 2025-11-26 23:15:29,683 | INFO     | sum of square deviations: 838166252487.906
[2025-11-27 00:16:07] 2025-11-26 23:15:29,738 | INFO     | sum of deviations: 4236135970821.567
[2025-11-27 00:16:07] 2025-11-26 23:15:29,738 | INFO     | mean x: 1764156036.104092
[2025-11-27 00:16:07] 2025-11-26 23:15:29,738 | INFO     | mean y: 2847104.285714286
[2025-11-27 00:16:07] 2025-11-26 23:15:29,738 | INFO     | intersect: -8913289545.812073
[2025-11-27 00:16:07] 2025-11-26 23:15:29,740 | INFO     | chi2: 19.96720766247453
[2025-11-27 00:16:07] 2025-11-26 23:15:29,740 | INFO     | current chi2=19.96720766247453 (change=14.238321145950145 %)
[2025-11-27 00:16:07] 2025-11-26 23:15:29,740 | INFO     | right removable region: 1392
[2025-11-27 00:16:07] 2025-11-26 23:15:29,742 | INFO     | sum of square deviations: 838165314307.9065
[2025-11-27 00:16:07] 2025-11-26 23:15:29,799 | INFO     | sum of deviations: 3172676297006.7485
[2025-11-27 00:16:07] 2025-11-26 23:15:29,799 | INFO     | mean x: 1764156341.104092
[2025-11-27 00:16:07] 2025-11-26 23:15:29,800 | INFO     | mean y: 2849022.2361809043
[2025-11-27 00:16:07] 2025-11-26 23:15:29,800 | INFO     | intersect: -6674947006.888173
[2025-11-27 00:16:07] 2025-11-26 23:15:29,802 | INFO     | chi2: 18.461704924266378
[2025-11-27 00:16:07] 2025-11-26 23:15:29,802 | INFO     | current chi2=18.461704924266378 (change=20.704645557988588 %)
[2025-11-27 00:16:07] 2025-11-26 23:15:29,802 | INFO     | left removable region: 10
[2025-11-27 00:16:07] 2025-11-26 23:15:29,804 | INFO     | sum of square deviations: 818465665725.8905
[2025-11-27 00:16:07] 2025-11-26 23:15:29,858 | INFO     | sum of deviations: 3231102103735.1777
[2025-11-27 00:16:07] 2025-11-26 23:15:29,860 | INFO     | mean x: 1764156310.61288
[2025-11-27 00:16:07] 2025-11-26 23:15:29,860 | INFO     | mean y: 2867693.6975397975
[2025-11-27 00:16:07] 2025-11-26 23:15:29,860 | INFO     | intersect: -6961589589.288831
[2025-11-27 00:16:07] 2025-11-26 23:15:29,862 | INFO     | chi2: 10.708366165376297
[2025-11-27 00:16:07] 2025-11-26 23:15:29,862 | INFO     | current memory leak: 3.95 B/s (using 1382 data points, chi2=10.71)
[2025-11-27 00:16:07] 2025-11-26 23:15:29,864 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-27 00:16:07] 2025-11-26 23:15:29,864 | INFO     | ..............................
[2025-11-27 00:16:07] 2025-11-26 23:15:29,864 | INFO     | . Timing measurements:
[2025-11-27 00:16:07] 2025-11-26 23:15:29,864 | INFO     | . get job = 0 s
[2025-11-27 00:16:07] 2025-11-26 23:15:29,864 | INFO     | . initial setup = 16 s
[2025-11-27 00:16:07] 2025-11-26 23:15:29,864 | INFO     | . payload setup = 160 s
[2025-11-27 00:16:07] 2025-11-26 23:15:29,864 | INFO     | . stage-in = 0 s
[2025-11-27 00:16:07] 2025-11-26 23:15:29,864 | INFO     | . payload execution = 85411 s
[2025-11-27 00:16:07] 2025-11-26 23:15:29,864 | INFO     | . stage-out = 4 s
[2025-11-27 00:16:07] 2025-11-26 23:15:29,865 | INFO     | . log creation = 1 s
[2025-11-27 00:16:07] 2025-11-26 23:15:29,865 | INFO     | ..............................
[2025-11-27 00:16:07] 2025-11-26 23:15:30,133 | INFO     | 
[2025-11-27 00:16:07] 2025-11-26 23:15:30,133 | INFO     | job summary report
[2025-11-27 00:16:07] 2025-11-26 23:15:30,133 | INFO     | --------------------------------------------------
[2025-11-27 00:16:07] 2025-11-26 23:15:30,133 | INFO     | PanDA job id: 6895342766
[2025-11-27 00:16:07] 2025-11-26 23:15:30,133 | INFO     | task id: 47556137
[2025-11-27 00:16:07] 2025-11-26 23:15:30,133 | INFO     | errors: (none)
[2025-11-27 00:16:07] 2025-11-26 23:15:30,134 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 00:16:07] 2025-11-26 23:15:30,134 | INFO     | pilot state: finished 
[2025-11-27 00:16:07] 2025-11-26 23:15:30,134 | INFO     | transexitcode: 0
[2025-11-27 00:16:07] 2025-11-26 23:15:30,134 | INFO     | exeerrorcode: 0
[2025-11-27 00:16:07] 2025-11-26 23:15:30,134 | INFO     | exeerrordiag: 
[2025-11-27 00:16:07] 2025-11-26 23:15:30,134 | INFO     | exitcode: 0
[2025-11-27 00:16:07] 2025-11-26 23:15:30,134 | INFO     | exitmsg: OK
[2025-11-27 00:16:07] 2025-11-26 23:15:30,134 | INFO     | cpuconsumptiontime: 320959 s
[2025-11-27 00:16:07] 2025-11-26 23:15:30,134 | INFO     | nevents: 1000
[2025-11-27 00:16:07] 2025-11-26 23:15:30,134 | INFO     | neventsw: 0
[2025-11-27 00:16:07] 2025-11-26 23:15:30,135 | INFO     | pid: 10552
[2025-11-27 00:16:07] 2025-11-26 23:15:30,135 | INFO     | pgrp: 10552
[2025-11-27 00:16:07] 2025-11-26 23:15:30,135 | INFO     | corecount: 8
[2025-11-27 00:16:07] 2025-11-26 23:15:30,135 | INFO     | event service: False
[2025-11-27 00:16:07] 2025-11-26 23:15:30,135 | INFO     | sizes: {0: 2284092, 1: 2284291, 2: 2284291, 12: 2284319, 23: 2284347, 34: 2284375, 45: 2284531, 56: 2284559, 67: 2284587, 77: 2284615, 88: 2284671, 99: 2285241, 11
[2025-11-27 00:16:07] 2025-11-26 23:15:30,135 | INFO     | --------------------------------------------------
[2025-11-27 00:16:07] 2025-11-26 23:15:30,135 | INFO     | 
[2025-11-27 00:16:07] 2025-11-26 23:15:30,135 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-27 00:16:07] 2025-11-26 23:15:30,351 | INFO     | PID=3958 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 00:16:07] 2025-11-26 23:15:30,352 | INFO     | .. there are 9 such processes running
[2025-11-27 00:16:07] 2025-11-26 23:15:30,402 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 00:16:07] 2025-11-26 23:15:30,403 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 00:16:07] 2025-11-26 23:15:30,403 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 00:16:07] 2025-11-26 23:15:30,403 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 00:16:07] 2025-11-26 23:15:30,403 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 00:16:07] 2025-11-26 23:15:30,403 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 00:16:07] 2025-11-26 23:15:30,403 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 00:16:07] 2025-11-26 23:15:30,403 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 00:16:07] 2025-11-26 23:15:30,403 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 00:16:07] 2025-11-26 23:15:30,404 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 00:16:07] 2025-11-26 23:15:30,404 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 00:16:07] 2025-11-26 23:15:30,404 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 00:16:07] 2025-11-26 23:15:30,404 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 00:16:07] 2025-11-26 23:15:30,404 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 00:16:07] 2025-11-26 23:15:30,404 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 00:16:07] 2025-11-26 23:15:30,404 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 00:16:07] 2025-11-26 23:15:30,404 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 00:16:07] 2025-11-26 23:15:30,405 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 00:16:07] 2025-11-26 23:15:30,405 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 00:16:07] 2025-11-26 23:15:30,405 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 00:16:07] 2025-11-26 23:15:30,405 | INFO     | job 6895342766 has completed (purged errors)
[2025-11-27 00:16:07] 2025-11-26 23:15:30,405 | INFO     | overall cleanup function is called
[2025-11-27 00:16:07] 2025-11-26 23:15:31,425 | INFO     | --- collectZombieJob: --- 10, [10552]
[2025-11-27 00:16:07] 2025-11-26 23:15:31,425 | INFO     | zombie collector waiting for pid 10552
[2025-11-27 00:16:07] 2025-11-26 23:15:31,425 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 00:16:07] 2025-11-26 23:15:31,425 | INFO     | collected zombie processes
[2025-11-27 00:16:07] 2025-11-26 23:15:31,425 | INFO     | will attempt to kill all subprocesses of pid=10552
[2025-11-27 00:16:07] 2025-11-26 23:15:31,527 | INFO     | process IDs to be killed: [10552] (in reverse order)
[2025-11-27 00:16:07] 2025-11-26 23:15:32,267 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 00:16:07] 2025-11-26 23:15:32,268 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 00:16:07] 2025-11-26 23:15:32,272 | INFO     | did not find any defunct processes belonging to 10552
[2025-11-27 00:16:07] 2025-11-26 23:15:32,274 | INFO     | did not find any defunct processes belonging to 10552
[2025-11-27 00:16:07] 2025-11-26 23:15:32,315 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 00:16:07] 2025-11-26 23:15:32,315 | INFO     | ready for new job
[2025-11-27 00:16:07] 2025-11-26 23:15:32,315 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 00:16:07] 2025-11-26 23:15:32,320 | INFO     | ***************************************
[2025-11-27 00:16:07] 2025-11-26 23:15:32,321 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 00:16:07] 2025-11-26 23:15:32,321 | INFO     | ***************************************
[2025-11-27 00:16:07] 2025-11-26 23:15:32,321 | INFO     | 
[2025-11-27 00:16:07] 2025-11-26 23:15:32,321 | INFO     | pilot is running in a VM
[2025-11-27 00:16:07] 2025-11-26 23:15:32,322 | INFO     | architecture information:
[2025-11-27 00:16:07] 2025-11-26 23:15:32,325 | INFO     | executing command: cat /etc/os-release
[2025-11-27 00:16:07] 2025-11-26 23:15:32,497 | INFO     | cat /etc/os-release:
[2025-11-27 00:16:07] NAME="CentOS Linux"
[2025-11-27 00:16:07] VERSION="7 (Core)"
[2025-11-27 00:16:07] ID="centos"
[2025-11-27 00:16:07] ID_LIKE="rhel fedora"
[2025-11-27 00:16:07] VERSION_ID="7"
[2025-11-27 00:16:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 00:16:07] ANSI_COLOR="0;31"
[2025-11-27 00:16:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 00:16:07] HOME_URL="https://www.centos.org/"
[2025-11-27 00:16:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 00:16:07] 
[2025-11-27 00:16:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 00:16:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 00:16:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 00:16:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 00:16:07] 
[2025-11-27 00:16:07] 2025-11-26 23:15:32,498 | INFO     | ***************************************
[2025-11-27 00:16:07] 2025-11-26 23:15:33,001 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-27 00:16:07] 2025-11-26 23:15:33,121 | INFO     | sufficient remaining disk space (495576940544 B)
[2025-11-27 00:16:07] 2025-11-26 23:15:33,121 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 00:16:07] 2025-11-26 23:15:33,121 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 00:16:07] 2025-11-26 23:15:33,121 | INFO     | update_server=False
[2025-11-27 00:16:07] 2025-11-26 23:15:33,121 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 00:16:07] 2025-11-26 23:15:33,122 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 00:16:07] 2025-11-26 23:15:33,141 | INFO     | all job control threads have been joined
[2025-11-27 00:16:07] 2025-11-26 23:15:33,235 | INFO     | all data control threads have been joined
[2025-11-27 00:16:07] 2025-11-26 23:15:33,280 | INFO     | all payload control threads have been joined
[2025-11-27 00:16:07] 2025-11-26 23:15:33,968 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:16:07] 2025-11-26 23:15:33,968 | INFO     | aborting loop
[2025-11-27 00:16:07] 2025-11-26 23:15:34,127 | INFO     | [job] retrieve thread has finished
[2025-11-27 00:16:07] 2025-11-26 23:15:34,147 | INFO     | [job] control thread has finished
[2025-11-27 00:16:07] 2025-11-26 23:15:34,204 | INFO     | [data] copytool_in thread has finished
[2025-11-27 00:16:07] 2025-11-26 23:15:34,208 | INFO     | [payload] validate_post thread has finished
[2025-11-27 00:16:07] 2025-11-26 23:15:34,235 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 00:16:07] 2025-11-26 23:15:34,241 | INFO     | [data] control thread has finished
[2025-11-27 00:16:07] 2025-11-26 23:15:34,286 | INFO     | [payload] control thread has finished
[2025-11-27 00:16:07] 2025-11-26 23:15:34,319 | INFO     | [payload] failed_post thread has finished
[2025-11-27 00:16:07] 2025-11-26 23:15:34,432 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 00:16:07] 2025-11-26 23:15:34,502 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 00:16:07] 2025-11-26 23:15:34,502 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 00:16:07] 2025-11-26 23:15:34,786 | INFO     | [job] validate thread has finished
[2025-11-27 00:16:07] 2025-11-26 23:15:34,873 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 00:16:07] 2025-11-26 23:15:34,974 | INFO     | [job] job monitor thread has finished
[2025-11-27 00:16:07] 2025-11-26 23:15:34,999 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:16:07] 2025-11-26 23:15:36,005 | INFO     | [job] queue monitor thread has finished
[2025-11-27 00:16:07] 2025-11-26 23:15:36,439 | INFO     | [data] copytool_out thread has finished
[2025-11-27 00:16:07] 2025-11-26 23:15:37,131 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 00:16:07] 2025-11-26 23:15:46,051 | INFO     | [monitor] cgroup control has ended
[2025-11-27 00:16:07] 2025-11-26 23:15:46,811 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140328695519040)>', '<ExcThread(monitor, started 140327973279488)>']
[2025-11-27 00:16:07] 2025-11-26 23:15:51,837 | INFO     | all workflow threads have been joined
[2025-11-27 00:16:07] 2025-11-26 23:15:51,837 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 00:16:07] 2025-11-26 23:15:51,837 | INFO     | traces error code: 0
[2025-11-27 00:16:07] 2025-11-26 23:15:51,837 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 00:16:07] 2025-11-26 23:16:02,501 | INFO     | PID=3958 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 00:16:07] 2025-11-26 23:16:02,502 | INFO     | .. there are 9 such processes running
[2025-11-27 00:16:07] 2025-11-26 23:16:02,502 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 00:16:07] 2025-11-26 23:16:02,502 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 00:16:07] 2025-11-26 23:16:02,502 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 00:16:07] 2025-11-26 23:16:02,503 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 00:16:07] 2025-11-26 23:16:02,503 | INFO     | [monitor] control thread has ended
[2025-11-27 00:16:07] 2025-11-26 23:16:02,737 [wrapper] ==== pilot stdout END ====
[2025-11-27 00:16:07] 2025-11-26 23:16:02,854 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 00:16:07] 2025-11-26 23:16:02,952 [wrapper] pilotpid: 3958
[2025-11-27 00:16:07] 2025-11-26 23:16:03,046 [wrapper] Pilot exit status: 0
[2025-11-27 00:16:07] 2025-11-26 23:16:03,482 [wrapper] pandaids: 6895342766
[2025-11-27 00:16:07] 2025-11-26 23:16:04,324 [wrapper] cleanup supervisor_pilot 16724 3959
[2025-11-27 00:16:07] 2025-11-26 23:16:04,407 [wrapper] Test setup, not cleaning
[2025-11-27 00:16:07] 2025-11-26 23:16:04,473 [wrapper] apfmon messages muted
[2025-11-27 00:16:07] 2025-11-26 23:16:04,534 [wrapper] ==== wrapper stdout END ====
[2025-11-27 00:16:07] 2025-11-26 23:16:04,633 [wrapper] ==== wrapper stderr END ====
[2025-11-27 00:16:07]  *** Error codes and diagnostics ***
[2025-11-27 00:16:07]     "exeErrorCode": 0,
[2025-11-27 00:16:07]     "exeErrorDiag": "",
[2025-11-27 00:16:07]     "pilotErrorCode": 0,
[2025-11-27 00:16:07]     "pilotErrorDiag": "",
[2025-11-27 00:16:07]  *** Listing of results directory ***
[2025-11-27 00:16:07] total 1341000
[2025-11-27 00:16:07] -rw-r--r--. 1 boinc boinc    576529 Nov 22 16:36 pilot3.tar.gz
[2025-11-27 00:16:07] -rw-r--r--. 1 boinc boinc      5112 Nov 22 16:37 queuedata.json
[2025-11-27 00:16:07] -rwx------. 1 boinc boinc     36292 Nov 22 16:37 runpilot2-wrapper.sh
[2025-11-27 00:16:07] -rw-r--r--. 1 boinc boinc       100 Nov 26 00:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 00:16:07] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 00:20 run_atlas
[2025-11-27 00:16:07] -rw-r--r--. 1 boinc boinc       105 Nov 26 00:20 job.xml
[2025-11-27 00:16:07] -rw-r--r--. 2 boinc boinc 412171294 Nov 26 00:20 EVNT.47483658._000411.pool.root.1
[2025-11-27 00:16:07] -rw-r--r--. 1 boinc boinc      6390 Nov 26 00:20 init_data.xml
[2025-11-27 00:16:07] -rw-r--r--. 2 boinc boinc     15847 Nov 26 00:20 start_atlas.sh
[2025-11-27 00:16:07] drwxrwx--x. 2 boinc boinc        68 Nov 26 00:20 shared
[2025-11-27 00:16:07] -rw-r--r--. 2 boinc boinc    590095 Nov 26 00:20 input.tar.gz
[2025-11-27 00:16:07] -rw-r--r--. 1 boinc boinc         0 Nov 26 00:20 boinc_lockfile
[2025-11-27 00:16:07] -rw-r--r--. 1 boinc boinc      2784 Nov 26 00:20 pandaJob.out
[2025-11-27 00:16:07] -rw-------. 1 boinc boinc    991877 Nov 26 00:24 agis_schedconf.cvmfs.json
[2025-11-27 00:16:07] drwx------. 5 boinc boinc      4096 Nov 26 00:24 pilot3
[2025-11-27 00:16:07] -rw-r--r--. 1 boinc boinc       533 Nov 26 23:53 boinc_task_state.xml
[2025-11-27 00:16:07] -rw-------. 1 boinc boinc 929215692 Nov 27 00:12 HITS.47556137._004062.pool.root.1
[2025-11-27 00:16:07] -rw-------. 1 boinc boinc      1030 Nov 27 00:13 memory_monitor_summary.json
[2025-11-27 00:16:07] -rw-------. 1 boinc boinc   1516240 Nov 27 00:13 agis_ddmendpoints.agis.ALL.json
[2025-11-27 00:16:07] -rw-------. 1 boinc boinc   2495494 Nov 27 00:13 log.47556137._004062.job.log.tgz.1
[2025-11-27 00:16:07] -rw-------. 1 boinc boinc        95 Nov 27 00:15 pilot_heartbeat.json
[2025-11-27 00:16:07] -rw-------. 1 boinc boinc      8636 Nov 27 00:15 heartbeat.json
[2025-11-27 00:16:07] -rw-r--r--. 1 boinc boinc      8192 Nov 27 00:15 boinc_mmap_file
[2025-11-27 00:16:07] -rw-r--r--. 1 boinc boinc        29 Nov 27 00:15 wrapper_checkpoint.txt
[2025-11-27 00:16:07] -rw-------. 1 boinc boinc       819 Nov 27 00:16 pilotlog.txt
[2025-11-27 00:16:07] -rw-------. 1 boinc boinc  11455784 Nov 27 00:16 log.47556137._004062.job.log.1
[2025-11-27 00:16:07] -rw-------. 1 boinc boinc       353 Nov 27 00:16 output.list
[2025-11-27 00:16:07] -rw-r--r--. 1 boinc boinc       620 Nov 27 00:16 runtime_log
[2025-11-27 00:16:07] -rw-------. 1 boinc boinc  13967360 Nov 27 00:16 result.tar.gz
[2025-11-27 00:16:07] -rw-------. 1 boinc boinc       662 Nov 27 00:16 wbSMDmIr4g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm69HKDm4mqwZn.diag
[2025-11-27 00:16:07] -rw-r--r--. 1 boinc boinc      8817 Nov 27 00:16 runtime_log.err
[2025-11-27 00:16:07] -rw-r--r--. 1 boinc boinc     21500 Nov 27 00:16 stderr.txt
[2025-11-27 00:16:07] HITS file was successfully produced:
[2025-11-27 00:16:07] -rw-------. 1 boinc boinc 929215692 Nov 27 00:12 shared/HITS.pool.root.1
[2025-11-27 00:16:07]  *** Contents of shared directory: ***
[2025-11-27 00:16:07] total 1324188
[2025-11-27 00:16:07] -rw-r--r--. 2 boinc boinc 412171294 Nov 26 00:20 ATLAS.root_0
[2025-11-27 00:16:07] -rw-r--r--. 2 boinc boinc     15847 Nov 26 00:20 start_atlas.sh
[2025-11-27 00:16:07] -rw-r--r--. 2 boinc boinc    590095 Nov 26 00:20 input.tar.gz
[2025-11-27 00:16:07] -rw-------. 1 boinc boinc 929215692 Nov 27 00:12 HITS.pool.root.1
[2025-11-27 00:16:07] -rw-------. 1 boinc boinc  13967360 Nov 27 00:16 result.tar.gz
00:16:09 (32533): run_atlas exited; CPU time 321564.148181
00:16:09 (32533): called boinc_finish(0)

</stderr_txt>
]]>

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