Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:55:31 (27825): wrapper (7.7.26015): starting
08:55:31 (27825): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 08:55:31] Arguments: --nthreads 8
[2025-11-23 08:55:31] Threads: 8
[2025-11-23 08:55:31] Checking for CVMFS
[2025-11-23 08:55:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 08:55:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 08:55:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 08:55:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 08:55:31] 2.11.2.0 6491 4714 65864 153210 2 82 11193504 18432001 1813 130560 0 4099136 99.992 167479 12343 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 08:55:31] CVMFS is ok
[2025-11-23 08:55:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 08:55:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 08:55:31] Further information can be found at the LHC@home message board.
[2025-11-23 08:55:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 08:55:31] Checking for apptainer binary...
[2025-11-23 08:55:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 08:55:31] Running /usr/bin/apptainer --version
[2025-11-23 08:55:31] apptainer version 1.3.2-1.el7
[2025-11-23 08:55:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 08:55:32] c-206-29.aglt2.org
[2025-11-23 08:55:32] apptainer works
[2025-11-23 08:55:32] Set ATHENA_PROC_NUMBER=8
[2025-11-23 08:55:32] Set ATHENA_CORE_NUMBER=8
[2025-11-23 08:55:32] Starting ATLAS job with PandaID=6894266056
[2025-11-23 08:55:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:12:51 (16599): wrapper (7.7.26015): starting
18:12:51 (16599): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 18:12:51] Arguments: --nthreads 8
[2025-11-23 18:12:51] Threads: 8
[2025-11-23 18:12:51] This job has been restarted, cleaning up previous attempt
[2025-11-23 18:12:51] Checking for CVMFS
[2025-11-23 18:12:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 18:12:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 18:12:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 18:12:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 18:12:51] 2.11.2.0 6491 5271 62480 153225 1 1 11250821 18432001 1 130560 0 4697628 99.992 187303 13266 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 18:12:51] CVMFS is ok
[2025-11-23 18:12:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 18:12:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 18:12:51] Further information can be found at the LHC@home message board.
[2025-11-23 18:12:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 18:12:51] Checking for apptainer binary...
[2025-11-23 18:12:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 18:12:51] Running /usr/bin/apptainer --version
[2025-11-23 18:12:51] apptainer version 1.3.2-1.el7
[2025-11-23 18:12:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 18:12:52] c-206-29.aglt2.org
[2025-11-23 18:12:52] apptainer works
[2025-11-23 18:12:52] Set ATHENA_PROC_NUMBER=8
[2025-11-23 18:12:52] Set ATHENA_CORE_NUMBER=8
[2025-11-23 18:12:52] Starting ATLAS job with PandaID=6894266056
[2025-11-23 18:12:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 14:25:12]  *** The last 200 lines of the pilot log: ***
[2025-11-24 14:25:12] 2025-11-24 19:24:21,646 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 14:25:12] 2025-11-24 19:24:21,883 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 14:25:12] 2025-11-24 19:24:21,887 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 1790.125
[2025-11-24 14:25:12] 2025-11-24 19:24:21,890 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894266056/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 14:25:12] 2025-11-24 19:24:21,891 | INFO     | extracted standard info from prmon json
[2025-11-24 14:25:12] 2025-11-24 19:24:21,891 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 14:25:12] 2025-11-24 19:24:21,891 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 14:25:12] 2025-11-24 19:24:21,907 | INFO     | fitting pss+swap vs Time
[2025-11-24 14:25:12] 2025-11-24 19:24:21,908 | INFO     | sum of square deviations: 523857461083.4162
[2025-11-24 14:25:12] 2025-11-24 19:24:21,934 | INFO     | sum of deviations: 2659881298598.829
[2025-11-24 14:25:12] 2025-11-24 19:24:21,935 | INFO     | mean x: 1763975907.804366
[2025-11-24 14:25:12] 2025-11-24 19:24:21,935 | INFO     | mean y: 2871300.8018471873
[2025-11-24 14:25:12] 2025-11-24 19:24:21,935 | INFO     | intersect: -8953699669.179245
[2025-11-24 14:25:12] 2025-11-24 19:24:21,936 | INFO     | chi2: 4.699114865771912
[2025-11-24 14:25:12] 2025-11-24 19:24:21,937 | INFO     | sum of square deviations: 517287704502.66864
[2025-11-24 14:25:12] 2025-11-24 19:24:21,964 | INFO     | sum of deviations: 2973026854830.8916
[2025-11-24 14:25:12] 2025-11-24 19:24:21,964 | INFO     | mean x: 1763975755.3077571
[2025-11-24 14:25:12] 2025-11-24 19:24:21,964 | INFO     | mean y: 2878564.4359190557
[2025-11-24 14:25:12] 2025-11-24 19:24:21,964 | INFO     | intersect: -10135284871.794592
[2025-11-24 14:25:12] 2025-11-24 19:24:21,965 | INFO     | chi2: 2.482375340783571
[2025-11-24 14:25:12] 2025-11-24 19:24:21,965 | INFO     | current chi2=2.482375340783571 (change=47.173554771664485 %)
[2025-11-24 14:25:12] 2025-11-24 19:24:21,966 | INFO     | sum of square deviations: 510773111746.8921
[2025-11-24 14:25:12] 2025-11-24 19:24:21,993 | INFO     | sum of deviations: 2985871098617.704
[2025-11-24 14:25:12] 2025-11-24 19:24:21,993 | INFO     | mean x: 1763975602.811177
[2025-11-24 14:25:12] 2025-11-24 19:24:21,993 | INFO     | mean y: 2878862.8103302284
[2025-11-24 14:25:12] 2025-11-24 19:24:21,994 | INFO     | intersect: -10308947758.381588
[2025-11-24 14:25:12] 2025-11-24 19:24:21,995 | INFO     | chi2: 2.4062814737350355
[2025-11-24 14:25:12] 2025-11-24 19:24:21,996 | INFO     | current chi2=2.4062814737350355 (change=3.0653650879611165 %)
[2025-11-24 14:25:12] 2025-11-24 19:24:21,996 | INFO     | right removable region: 1180
[2025-11-24 14:25:12] 2025-11-24 19:24:21,998 | INFO     | sum of square deviations: 517287120122.6688
[2025-11-24 14:25:12] 2025-11-24 19:24:22,026 | INFO     | sum of deviations: 2363241927308.1367
[2025-11-24 14:25:12] 2025-11-24 19:24:22,026 | INFO     | mean x: 1763976060.3077571
[2025-11-24 14:25:12] 2025-11-24 19:24:22,026 | INFO     | mean y: 2878177.1804384487
[2025-11-24 14:25:12] 2025-11-24 19:24:22,026 | INFO     | intersect: -8055900057.039965
[2025-11-24 14:25:12] 2025-11-24 19:24:22,028 | INFO     | chi2: 2.675489334840557
[2025-11-24 14:25:12] 2025-11-24 19:24:22,028 | INFO     | current chi2=2.675489334840557 (change=43.06397244449863 %)
[2025-11-24 14:25:12] 2025-11-24 19:24:22,029 | INFO     | sum of square deviations: 510772015577.51434
[2025-11-24 14:25:12] 2025-11-24 19:24:22,057 | INFO     | sum of deviations: 2263543090245.272
[2025-11-24 14:25:12] 2025-11-24 19:24:22,057 | INFO     | mean x: 1763976212.8103302
[2025-11-24 14:25:12] 2025-11-24 19:24:22,057 | INFO     | mean y: 2880510.617273497
[2025-11-24 14:25:12] 2025-11-24 19:24:22,057 | INFO     | intersect: -7814376594.491095
[2025-11-24 14:25:12] 2025-11-24 19:24:22,058 | INFO     | chi2: 2.578366476443452
[2025-11-24 14:25:12] 2025-11-24 19:24:22,058 | INFO     | current chi2=2.578366476443452 (change=3.6300970118758706 %)
[2025-11-24 14:25:12] 2025-11-24 19:24:22,058 | INFO     | left removable region: 20
[2025-11-24 14:25:12] 2025-11-24 19:24:22,059 | INFO     | sum of square deviations: 484007267791.6196
[2025-11-24 14:25:12] 2025-11-24 19:24:22,086 | INFO     | sum of deviations: 2435608628704.426
[2025-11-24 14:25:12] 2025-11-24 19:24:22,086 | INFO     | mean x: 1763976182.3181036
[2025-11-24 14:25:12] 2025-11-24 19:24:22,086 | INFO     | mean y: 2891721.1939655175
[2025-11-24 14:25:12] 2025-11-24 19:24:22,086 | INFO     | intersect: -8873742776.64333
[2025-11-24 14:25:12] 2025-11-24 19:24:22,087 | INFO     | chi2: 0.19817409355824742
[2025-11-24 14:25:12] 2025-11-24 19:24:22,087 | INFO     | current memory leak: 5.03 B/s (using 1160 data points, chi2=0.20)
[2025-11-24 14:25:12] 2025-11-24 19:24:22,088 | INFO     | could have reported an average CPU frequency of 2562 MHz (43 samples)
[2025-11-24 14:25:12] 2025-11-24 19:24:22,088 | INFO     | ..............................
[2025-11-24 14:25:12] 2025-11-24 19:24:22,089 | INFO     | . Timing measurements:
[2025-11-24 14:25:12] 2025-11-24 19:24:22,089 | INFO     | . get job = 0 s
[2025-11-24 14:25:12] 2025-11-24 19:24:22,089 | INFO     | . initial setup = 2 s
[2025-11-24 14:25:12] 2025-11-24 19:24:22,089 | INFO     | . payload setup = 6 s
[2025-11-24 14:25:12] 2025-11-24 19:24:22,089 | INFO     | . stage-in = 0 s
[2025-11-24 14:25:12] 2025-11-24 19:24:22,089 | INFO     | . payload execution = 72642 s
[2025-11-24 14:25:12] 2025-11-24 19:24:22,089 | INFO     | . stage-out = 3 s
[2025-11-24 14:25:12] 2025-11-24 19:24:22,089 | INFO     | . log creation = 0 s
[2025-11-24 14:25:12] 2025-11-24 19:24:22,089 | INFO     | ..............................
[2025-11-24 14:25:12] 2025-11-24 19:24:22,174 | INFO     | 
[2025-11-24 14:25:12] 2025-11-24 19:24:22,175 | INFO     | job summary report
[2025-11-24 14:25:12] 2025-11-24 19:24:22,175 | INFO     | --------------------------------------------------
[2025-11-24 14:25:12] 2025-11-24 19:24:22,175 | INFO     | PanDA job id: 6894266056
[2025-11-24 14:25:12] 2025-11-24 19:24:22,175 | INFO     | task id: 47533967
[2025-11-24 14:25:12] 2025-11-24 19:24:22,175 | INFO     | errors: (none)
[2025-11-24 14:25:12] 2025-11-24 19:24:22,175 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 14:25:12] 2025-11-24 19:24:22,175 | INFO     | pilot state: finished 
[2025-11-24 14:25:12] 2025-11-24 19:24:22,177 | INFO     | transexitcode: 0
[2025-11-24 14:25:12] 2025-11-24 19:24:22,177 | INFO     | exeerrorcode: 0
[2025-11-24 14:25:12] 2025-11-24 19:24:22,177 | INFO     | exeerrordiag: 
[2025-11-24 14:25:12] 2025-11-24 19:24:22,177 | INFO     | exitcode: 0
[2025-11-24 14:25:12] 2025-11-24 19:24:22,177 | INFO     | exitmsg: OK
[2025-11-24 14:25:12] 2025-11-24 19:24:22,177 | INFO     | cpuconsumptiontime: 564776 s
[2025-11-24 14:25:12] 2025-11-24 19:24:22,178 | INFO     | nevents: 1000
[2025-11-24 14:25:12] 2025-11-24 19:24:22,178 | INFO     | neventsw: 0
[2025-11-24 14:25:12] 2025-11-24 19:24:22,178 | INFO     | pid: 14683
[2025-11-24 14:25:12] 2025-11-24 19:24:22,178 | INFO     | pgrp: 14683
[2025-11-24 14:25:12] 2025-11-24 19:24:22,178 | INFO     | corecount: 8
[2025-11-24 14:25:12] 2025-11-24 19:24:22,178 | INFO     | event service: False
[2025-11-24 14:25:12] 2025-11-24 19:24:22,178 | INFO     | sizes: {0: 2298636, 1: 2298835, 5: 2299097, 11: 2299153, 72652: 2357347, 72656: 2367316, 72660: 2367506}
[2025-11-24 14:25:12] 2025-11-24 19:24:22,178 | INFO     | --------------------------------------------------
[2025-11-24 14:25:12] 2025-11-24 19:24:22,178 | INFO     | 
[2025-11-24 14:25:12] 2025-11-24 19:24:22,179 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 14:25:12] 2025-11-24 19:24:22,196 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 14:25:12] 2025-11-24 19:24:22,197 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 14:25:12] 2025-11-24 19:24:22,197 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 14:25:12] 2025-11-24 19:24:22,197 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 14:25:12] 2025-11-24 19:24:22,197 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 14:25:12] 2025-11-24 19:24:22,197 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 14:25:12] 2025-11-24 19:24:22,197 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 14:25:12] 2025-11-24 19:24:22,197 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 14:25:12] 2025-11-24 19:24:22,197 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 14:25:12] 2025-11-24 19:24:22,197 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 14:25:12] 2025-11-24 19:24:22,198 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 14:25:12] 2025-11-24 19:24:22,198 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 14:25:12] 2025-11-24 19:24:22,198 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 14:25:12] 2025-11-24 19:24:22,198 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 14:25:12] 2025-11-24 19:24:22,198 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 14:25:12] 2025-11-24 19:24:22,198 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 14:25:12] 2025-11-24 19:24:22,198 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 14:25:12] 2025-11-24 19:24:22,198 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 14:25:12] 2025-11-24 19:24:22,198 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 14:25:12] 2025-11-24 19:24:22,199 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 14:25:12] 2025-11-24 19:24:22,199 | INFO     | job 6894266056 has completed (purged errors)
[2025-11-24 14:25:12] 2025-11-24 19:24:22,199 | INFO     | overall cleanup function is called
[2025-11-24 14:25:12] 2025-11-24 19:24:23,212 | INFO     | --- collectZombieJob: --- 10, [14683]
[2025-11-24 14:25:12] 2025-11-24 19:24:23,213 | INFO     | zombie collector waiting for pid 14683
[2025-11-24 14:25:12] 2025-11-24 19:24:23,213 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 14:25:12] 2025-11-24 19:24:23,213 | INFO     | collected zombie processes
[2025-11-24 14:25:12] 2025-11-24 19:24:23,213 | INFO     | will attempt to kill all subprocesses of pid=14683
[2025-11-24 14:25:12] 2025-11-24 19:24:23,327 | INFO     | process IDs to be killed: [14683] (in reverse order)
[2025-11-24 14:25:12] 2025-11-24 19:24:23,373 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 14:25:12] 2025-11-24 19:24:23,373 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 14:25:12] 2025-11-24 19:24:23,376 | INFO     | did not find any defunct processes belonging to 14683
[2025-11-24 14:25:12] 2025-11-24 19:24:23,378 | INFO     | did not find any defunct processes belonging to 14683
[2025-11-24 14:25:12] 2025-11-24 19:24:23,380 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 14:25:12] 2025-11-24 19:24:23,380 | INFO     | ready for new job
[2025-11-24 14:25:12] 2025-11-24 19:24:23,380 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 14:25:12] 2025-11-24 19:24:23,384 | INFO     | ***************************************
[2025-11-24 14:25:12] 2025-11-24 19:24:23,384 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 14:25:12] 2025-11-24 19:24:23,384 | INFO     | ***************************************
[2025-11-24 14:25:12] 2025-11-24 19:24:23,384 | INFO     | 
[2025-11-24 14:25:12] 2025-11-24 19:24:23,385 | INFO     | architecture information:
[2025-11-24 14:25:12] 2025-11-24 19:24:23,386 | INFO     | executing command: cat /etc/os-release
[2025-11-24 14:25:12] 2025-11-24 19:24:23,398 | INFO     | cat /etc/os-release:
[2025-11-24 14:25:12] NAME="CentOS Linux"
[2025-11-24 14:25:12] VERSION="7 (Core)"
[2025-11-24 14:25:12] ID="centos"
[2025-11-24 14:25:12] ID_LIKE="rhel fedora"
[2025-11-24 14:25:12] VERSION_ID="7"
[2025-11-24 14:25:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 14:25:12] ANSI_COLOR="0;31"
[2025-11-24 14:25:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 14:25:12] HOME_URL="https://www.centos.org/"
[2025-11-24 14:25:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 14:25:12] 
[2025-11-24 14:25:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 14:25:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 14:25:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 14:25:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 14:25:12] 
[2025-11-24 14:25:12] 2025-11-24 19:24:23,398 | INFO     | ***************************************
[2025-11-24 14:25:12] 2025-11-24 19:24:23,901 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 14:25:12] 2025-11-24 19:24:23,963 | INFO     | sufficient remaining disk space (25788678144 B)
[2025-11-24 14:25:12] 2025-11-24 19:24:23,964 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 14:25:12] 2025-11-24 19:24:23,964 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 14:25:12] 2025-11-24 19:24:23,964 | INFO     | update_server=False
[2025-11-24 14:25:12] 2025-11-24 19:24:23,964 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 14:25:12] 2025-11-24 19:24:23,964 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 14:25:12] 2025-11-24 19:24:23,965 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 14:25:12] 2025-11-24 19:24:23,965 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 14:25:12] 2025-11-24 19:24:24,147 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 14:25:12] 2025-11-24 19:24:24,147 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 14:25:12] 2025-11-24 19:24:24,148 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 14:25:12] 2025-11-24 19:24:24,148 | INFO     | will abort loop
[2025-11-24 14:25:12] 2025-11-24 19:24:24,227 | INFO     | all data control threads have been joined
[2025-11-24 14:25:12] 2025-11-24 19:24:24,843 | INFO     | all payload control threads have been joined
[2025-11-24 14:25:12] 2025-11-24 19:24:24,970 | INFO     | [job] retrieve thread has finished
[2025-11-24 14:25:12] 2025-11-24 19:24:24,970 | INFO     | [job] queue monitor thread has finished
[2025-11-24 14:25:12] 2025-11-24 19:24:25,149 | INFO     | [job] job monitor thread has finished
[2025-11-24 14:25:12] 2025-11-24 19:24:25,152 | INFO     | [data] copytool_in thread has finished
[2025-11-24 14:25:12] 2025-11-24 19:24:25,231 | INFO     | [data] control thread has finished
[2025-11-24 14:25:12] 2025-11-24 19:24:25,437 | INFO     | [job] validate thread has finished
[2025-11-24 14:25:12] 2025-11-24 19:24:25,450 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 14:25:12] 2025-11-24 19:24:25,497 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 14:25:12] 2025-11-24 19:24:25,533 | INFO     | all job control threads have been joined
[2025-11-24 14:25:12] 2025-11-24 19:24:25,749 | INFO     | [payload] failed_post thread has finished
[2025-11-24 14:25:12] 2025-11-24 19:24:25,847 | INFO     | [payload] control thread has finished
[2025-11-24 14:25:12] 2025-11-24 19:24:25,940 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 14:25:12] 2025-11-24 19:24:25,970 | INFO     | [data] copytool_out thread has finished
[2025-11-24 14:25:12] 2025-11-24 19:24:26,120 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 14:25:12] 2025-11-24 19:24:26,522 | INFO     | [payload] validate_post thread has finished
[2025-11-24 14:25:12] 2025-11-24 19:24:26,538 | INFO     | [job] control thread has finished
[2025-11-24 14:25:12] 2025-11-24 19:24:27,970 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 14:25:12] 2025-11-24 19:24:53,968 | INFO     | PID=27804 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 14:25:12] 2025-11-24 19:24:53,968 | INFO     | .. there are 3 such processes running
[2025-11-24 14:25:12] 2025-11-24 19:24:53,969 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 14:25:12] 2025-11-24 19:24:53,969 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 14:25:12] 2025-11-24 19:24:53,969 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 14:25:12] 2025-11-24 19:25:06,375 | INFO     | [monitor] cgroup control has ended
[2025-11-24 14:25:12] 2025-11-24 19:25:07,321 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139787655923520)>', '<ExcThread(monitor, started 139787092621056)>']
[2025-11-24 14:25:12] 2025-11-24 19:25:08,040 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 14:25:12] 2025-11-24 19:25:08,040 | INFO     | [monitor] control thread has ended
[2025-11-24 14:25:12] 2025-11-24 19:25:12,345 | INFO     | all workflow threads have been joined
[2025-11-24 14:25:12] 2025-11-24 19:25:12,346 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 14:25:12] 2025-11-24 19:25:12,346 | INFO     | traces error code: 0
[2025-11-24 14:25:12] 2025-11-24 19:25:12,346 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 14:25:12] 2025-11-24 19:25:12,435 [wrapper] ==== pilot stdout END ====
[2025-11-24 14:25:12] 2025-11-24 19:25:12,438 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 14:25:12] 2025-11-24 19:25:12,440 [wrapper] pilotpid: 27804
[2025-11-24 14:25:12] 2025-11-24 19:25:12,442 [wrapper] Pilot exit status: 0
[2025-11-24 14:25:12] 2025-11-24 19:25:12,450 [wrapper] pandaids: 6894266056 6894266056
[2025-11-24 14:25:12] 2025-11-24 19:25:12,481 [wrapper] cleanup supervisor_pilot 23675 27807
[2025-11-24 14:25:12] 2025-11-24 19:25:12,484 [wrapper] Test setup, not cleaning
[2025-11-24 14:25:12] 2025-11-24 19:25:12,486 [wrapper] apfmon messages muted
[2025-11-24 14:25:12] 2025-11-24 19:25:12,489 [wrapper] ==== wrapper stdout END ====
[2025-11-24 14:25:12] 2025-11-24 19:25:12,491 [wrapper] ==== wrapper stderr END ====
[2025-11-24 14:25:12]  *** Error codes and diagnostics ***
[2025-11-24 14:25:12]     "exeErrorCode": 0,
[2025-11-24 14:25:12]     "exeErrorDiag": "",
[2025-11-24 14:25:12]     "pilotErrorCode": 0,
[2025-11-24 14:25:12]     "pilotErrorDiag": "",
[2025-11-24 14:25:12]  *** Listing of results directory ***
[2025-11-24 14:25:12] total 1737872
[2025-11-24 14:25:12] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-24 14:25:12] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 00:09 pilot3.tar.gz
[2025-11-24 14:25:12] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 00:09 queuedata.json
[2025-11-24 14:25:12] -rwx------ 1 boincer umatlas     36292 Nov 21 00:09 runpilot2-wrapper.sh
[2025-11-24 14:25:12] -rw-r--r-- 1 boincer umatlas       100 Nov 23 08:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 14:25:12] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 08:55 run_atlas
[2025-11-24 14:25:12] -rw-r--r-- 1 boincer umatlas       105 Nov 23 08:55 job.xml
[2025-11-24 14:25:12] -rw-r--r-- 3 boincer umatlas 410794676 Nov 23 08:55 EVNT.47493127._002224.pool.root.1
[2025-11-24 14:25:12] -rw-r--r-- 3 boincer umatlas 410794676 Nov 23 08:55 ATLAS.root_0
[2025-11-24 14:25:12] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 08:55 start_atlas.sh
[2025-11-24 14:25:12] drwxrwx--x 2 boincer umatlas      4096 Nov 23 08:55 shared
[2025-11-24 14:25:12] -rw-r--r-- 2 boincer umatlas    590105 Nov 23 08:55 input.tar.gz
[2025-11-24 14:25:12] -rw-r--r-- 1 boincer umatlas         0 Nov 23 08:55 boinc_lockfile
[2025-11-24 14:25:12] -rw-r--r-- 1 boincer umatlas      2786 Nov 23 18:12 pandaJob.out
[2025-11-24 14:25:12] -rw------- 1 boincer umatlas        57 Nov 23 18:12 setup.sh.local
[2025-11-24 14:25:12] -rw------- 1 boincer umatlas    989786 Nov 23 18:13 agis_schedconf.cvmfs.json
[2025-11-24 14:25:12] -rw-r--r-- 1 boincer umatlas       534 Nov 24 14:16 boinc_task_state.xml
[2025-11-24 14:25:12] -rw-r--r-- 1 boincer umatlas      5955 Nov 24 14:19 init_data.xml
[2025-11-24 14:25:12] -rw------- 1 boincer umatlas 929293535 Nov 24 14:23 HITS.47533967._001958.pool.root.1
[2025-11-24 14:25:12] -rw------- 1 boincer umatlas      1067 Nov 24 14:24 memory_monitor_summary.json
[2025-11-24 14:25:12] -rw------- 1 boincer umatlas   1516227 Nov 24 14:24 agis_ddmendpoints.agis.ALL.json
[2025-11-24 14:25:12] -rw------- 1 boincer umatlas   2335969 Nov 24 14:24 log.47533967._001958.job.log.tgz.1
[2025-11-24 14:25:12] -rw------- 1 boincer umatlas      8650 Nov 24 14:24 heartbeat.json
[2025-11-24 14:25:12] -rw-r--r-- 1 boincer umatlas        30 Nov 24 14:24 wrapper_checkpoint.txt
[2025-11-24 14:25:12] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 14:24 boinc_mmap_file
[2025-11-24 14:25:12] -rw------- 1 boincer umatlas        96 Nov 24 14:24 pilot_heartbeat.json
[2025-11-24 14:25:12] -rw------- 1 boincer umatlas      5007 Nov 24 14:25 pilotlog.txt
[2025-11-24 14:25:12] -rw------- 1 boincer umatlas  10052210 Nov 24 14:25 log.47533967._001958.job.log.1
[2025-11-24 14:25:12] -rw------- 1 boincer umatlas       353 Nov 24 14:25 output.list
[2025-11-24 14:25:12] -rw-r--r-- 1 boincer umatlas       620 Nov 24 14:25 runtime_log
[2025-11-24 14:25:12] -rw------- 1 boincer umatlas  12410880 Nov 24 14:25 result.tar.gz
[2025-11-24 14:25:12] -rw------- 1 boincer umatlas       793 Nov 24 14:25 XotLDmXZYg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmALHKDmZXRRGn.diag
[2025-11-24 14:25:12] -rw-r--r-- 1 boincer umatlas      9428 Nov 24 14:25 runtime_log.err
[2025-11-24 14:25:12] -rw-r--r-- 1 boincer umatlas     23415 Nov 24 14:25 stderr.txt
[2025-11-24 14:25:12] HITS file was successfully produced:
[2025-11-24 14:25:12] -rw------- 1 boincer umatlas 929293535 Nov 24 14:23 shared/HITS.pool.root.1
[2025-11-24 14:25:12]  *** Contents of shared directory: ***
[2025-11-24 14:25:12] total 1321404
[2025-11-24 14:25:12] -rw-r--r-- 3 boincer umatlas 410794676 Nov 23 08:55 ATLAS.root_0
[2025-11-24 14:25:12] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 08:55 start_atlas.sh
[2025-11-24 14:25:12] -rw-r--r-- 2 boincer umatlas    590105 Nov 23 08:55 input.tar.gz
[2025-11-24 14:25:12] -rw------- 1 boincer umatlas 929293535 Nov 24 14:23 HITS.pool.root.1
[2025-11-24 14:25:12] -rw------- 1 boincer umatlas  12410880 Nov 24 14:25 result.tar.gz
14:25:14 (16599): run_atlas exited; CPU time 563752.216689
14:25:14 (16599): called boinc_finish(0)

</stderr_txt>
]]>

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