Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:37:13 (27637): wrapper (7.7.26015): starting
04:37:13 (27637): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 04:37:13] Arguments: --nthreads 8
[2025-11-26 04:37:13] Threads: 8
[2025-11-26 04:37:13] Checking for CVMFS
[2025-11-26 04:37:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 04:37:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 04:37:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 04:37:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 04:37:15] 2.11.2.0 17493 87195 123164 153307 1 85 19085218 25165824 1288 130560 11 25060136 99.855 17451104 1697 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 04:37:15] CVMFS is ok
[2025-11-26 04:37:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 04:37:15] Checking for apptainer binary...
[2025-11-26 04:37:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 04:37:15] Running /usr/bin/apptainer --version
[2025-11-26 04:37:15] apptainer version 1.3.2-1.el7
[2025-11-26 04:37:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 04:37:20] cg-vwn341.simple-grid.lan
[2025-11-26 04:37:20] apptainer works
[2025-11-26 04:37:20] Set ATHENA_PROC_NUMBER=8
[2025-11-26 04:37:20] Set ATHENA_CORE_NUMBER=8
[2025-11-26 04:37:21] Starting ATLAS job with PandaID=6895342777
[2025-11-26 04:37:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 03:53:40]  *** The last 200 lines of the pilot log: ***
[2025-11-27 03:53:40] 2025-11-27 02:52:26,025 | INFO     | time since job start (83482s) is within the limit (172800.0s)
[2025-11-27 03:53:40] 2025-11-27 02:52:26,252 | INFO     | monitor loop #5627: job 0:6895342777 is in state 'finished'
[2025-11-27 03:53:40] 2025-11-27 02:52:26,253 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:53:40] 2025-11-27 02:52:28,038 | INFO     | time since job start (83484s) is within the limit (172800.0s)
[2025-11-27 03:53:40] 2025-11-27 02:52:28,759 | INFO     | monitor loop #5628: job 0:6895342777 is in state 'finished'
[2025-11-27 03:53:40] 2025-11-27 02:52:28,760 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:53:40] 2025-11-27 02:52:30,044 | INFO     | time since job start (83486s) is within the limit (172800.0s)
[2025-11-27 03:53:40] 2025-11-27 02:52:30,130 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 03:53:40] 2025-11-27 02:52:30,132 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 03:53:40] 2025-11-27 02:52:30,134 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-6895342777/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 03:53:40] 2025-11-27 02:52:30,135 | INFO     | extracted standard info from prmon json
[2025-11-27 03:53:40] 2025-11-27 02:52:30,135 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 03:53:40] 2025-11-27 02:52:30,135 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 03:53:40] 2025-11-27 02:52:30,161 | INFO     | fitting pss+swap vs Time
[2025-11-27 03:53:40] 2025-11-27 02:52:30,169 | INFO     | sum of square deviations: 778279826098.5575
[2025-11-27 03:53:40] 2025-11-27 02:52:30,252 | INFO     | sum of deviations: 3743147395274.7007
[2025-11-27 03:53:40] 2025-11-27 02:52:30,253 | INFO     | mean x: 1764170404.0632818
[2025-11-27 03:53:40] 2025-11-27 02:52:30,253 | INFO     | mean y: 2845578.9337748345
[2025-11-27 03:53:40] 2025-11-27 02:52:30,253 | INFO     | intersect: -8481955942.767174
[2025-11-27 03:53:40] 2025-11-27 02:52:30,255 | INFO     | chi2: 18.888066242889774
[2025-11-27 03:53:40] 2025-11-27 02:52:30,257 | INFO     | sum of square deviations: 769721529600.3832
[2025-11-27 03:53:40] 2025-11-27 02:52:30,337 | INFO     | sum of deviations: 4198144742309.086
[2025-11-27 03:53:40] 2025-11-27 02:52:30,337 | INFO     | mean x: 1764170251.5672083
[2025-11-27 03:53:40] 2025-11-27 02:52:30,337 | INFO     | mean y: 2853685.7407680945
[2025-11-27 03:53:40] 2025-11-27 02:52:30,337 | INFO     | intersect: -9619122290.42827
[2025-11-27 03:53:40] 2025-11-27 02:52:30,339 | INFO     | chi2: 15.678297575968822
[2025-11-27 03:53:40] 2025-11-27 02:52:30,344 | INFO     | current chi2=15.678297575968822 (change=16.993633046629313 %)
[2025-11-27 03:53:40] 2025-11-27 02:52:30,345 | INFO     | right removable region: 1353
[2025-11-27 03:53:40] 2025-11-27 02:52:30,347 | INFO     | sum of square deviations: 769720648150.3838
[2025-11-27 03:53:40] 2025-11-27 02:52:30,417 | INFO     | sum of deviations: 3171913758986.3755
[2025-11-27 03:53:40] 2025-11-27 02:52:30,417 | INFO     | mean x: 1764170556.5672083
[2025-11-27 03:53:40] 2025-11-27 02:52:30,418 | INFO     | mean y: 2855756.2156573115
[2025-11-27 03:53:40] 2025-11-27 02:52:30,418 | INFO     | intersect: -7267050377.939267
[2025-11-27 03:53:40] 2025-11-27 02:52:30,419 | INFO     | chi2: 14.131221542663761
[2025-11-27 03:53:40] 2025-11-27 02:52:30,420 | INFO     | current chi2=14.131221542663761 (change=25.18439229858525 %)
[2025-11-27 03:53:40] 2025-11-27 02:52:30,422 | INFO     | sum of square deviations: 761224448127.1682
[2025-11-27 03:53:40] 2025-11-27 02:52:30,479 | INFO     | sum of deviations: 2689725420713.7354
[2025-11-27 03:53:40] 2025-11-27 02:52:30,479 | INFO     | mean x: 1764170709.071164
[2025-11-27 03:53:40] 2025-11-27 02:52:30,480 | INFO     | mean y: 2864410.8673091177
[2025-11-27 03:53:40] 2025-11-27 02:52:30,480 | INFO     | intersect: -6230691033.051611
[2025-11-27 03:53:40] 2025-11-27 02:52:30,481 | INFO     | chi2: 10.85710682928137
[2025-11-27 03:53:40] 2025-11-27 02:52:30,482 | INFO     | current chi2=10.85710682928137 (change=23.169367938203127 %)
[2025-11-27 03:53:40] 2025-11-27 02:52:30,482 | INFO     | left removable region: 20
[2025-11-27 03:53:40] 2025-11-27 02:52:30,484 | INFO     | sum of square deviations: 734458576656.4119
[2025-11-27 03:53:40] 2025-11-27 02:52:30,536 | INFO     | sum of deviations: 2776271098620.2334
[2025-11-27 03:53:40] 2025-11-27 02:52:30,537 | INFO     | mean x: 1764170831.08027
[2025-11-27 03:53:40] 2025-11-27 02:52:30,537 | INFO     | mean y: 2883448.8949737432
[2025-11-27 03:53:40] 2025-11-27 02:52:30,537 | INFO     | intersect: -6665724757.23977
[2025-11-27 03:53:40] 2025-11-27 02:52:30,539 | INFO     | chi2: 4.510724803618784
[2025-11-27 03:53:40] 2025-11-27 02:52:30,539 | INFO     | current memory leak: 3.78 B/s (using 1333 data points, chi2=4.51)
[2025-11-27 03:53:40] 2025-11-27 02:52:30,541 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-27 03:53:40] 2025-11-27 02:52:30,542 | INFO     | ..............................
[2025-11-27 03:53:40] 2025-11-27 02:52:30,542 | INFO     | . Timing measurements:
[2025-11-27 03:53:40] 2025-11-27 02:52:30,542 | INFO     | . get job = 0 s
[2025-11-27 03:53:40] 2025-11-27 02:52:30,542 | INFO     | . initial setup = 6 s
[2025-11-27 03:53:40] 2025-11-27 02:52:30,542 | INFO     | . payload setup = 170 s
[2025-11-27 03:53:40] 2025-11-27 02:52:30,542 | INFO     | . stage-in = 0 s
[2025-11-27 03:53:40] 2025-11-27 02:52:30,542 | INFO     | . payload execution = 83015 s
[2025-11-27 03:53:40] 2025-11-27 02:52:30,542 | INFO     | . stage-out = 3 s
[2025-11-27 03:53:40] 2025-11-27 02:52:30,542 | INFO     | . log creation = 1 s
[2025-11-27 03:53:40] 2025-11-27 02:52:30,542 | INFO     | ..............................
[2025-11-27 03:53:40] 2025-11-27 02:52:30,666 | INFO     | 
[2025-11-27 03:53:40] 2025-11-27 02:52:30,666 | INFO     | job summary report
[2025-11-27 03:53:40] 2025-11-27 02:52:30,666 | INFO     | --------------------------------------------------
[2025-11-27 03:53:40] 2025-11-27 02:52:30,666 | INFO     | PanDA job id: 6895342777
[2025-11-27 03:53:40] 2025-11-27 02:52:30,667 | INFO     | task id: 47556137
[2025-11-27 03:53:40] 2025-11-27 02:52:30,667 | INFO     | errors: (none)
[2025-11-27 03:53:40] 2025-11-27 02:52:30,667 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 03:53:40] 2025-11-27 02:52:30,667 | INFO     | pilot state: finished 
[2025-11-27 03:53:40] 2025-11-27 02:52:30,667 | INFO     | transexitcode: 0
[2025-11-27 03:53:40] 2025-11-27 02:52:30,667 | INFO     | exeerrorcode: 0
[2025-11-27 03:53:40] 2025-11-27 02:52:30,667 | INFO     | exeerrordiag: 
[2025-11-27 03:53:40] 2025-11-27 02:52:30,667 | INFO     | exitcode: 0
[2025-11-27 03:53:40] 2025-11-27 02:52:30,667 | INFO     | exitmsg: OK
[2025-11-27 03:53:40] 2025-11-27 02:52:30,667 | INFO     | cpuconsumptiontime: 313749 s
[2025-11-27 03:53:40] 2025-11-27 02:52:30,667 | INFO     | nevents: 1000
[2025-11-27 03:53:40] 2025-11-27 02:52:30,668 | INFO     | neventsw: 0
[2025-11-27 03:53:40] 2025-11-27 02:52:30,668 | INFO     | pid: 5598
[2025-11-27 03:53:40] 2025-11-27 02:52:30,668 | INFO     | pgrp: 5598
[2025-11-27 03:53:40] 2025-11-27 02:52:30,668 | INFO     | corecount: 8
[2025-11-27 03:53:40] 2025-11-27 02:52:30,668 | INFO     | event service: False
[2025-11-27 03:53:40] 2025-11-27 02:52:30,668 | INFO     | sizes: {0: 2284031, 1: 2284115, 2: 2284286, 12: 2284314, 23: 2284342, 34: 2284370, 45: 2284526, 55: 2284554, 66: 2284582, 77: 2284610, 88: 2284666, 97: 2285236, 98
[2025-11-27 03:53:40] 2025-11-27 02:52:30,668 | INFO     | --------------------------------------------------
[2025-11-27 03:53:40] 2025-11-27 02:52:30,668 | INFO     | 
[2025-11-27 03:53:40] 2025-11-27 02:52:30,669 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-11-27 03:53:40] 2025-11-27 02:52:30,697 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 03:53:40] 2025-11-27 02:52:30,697 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 03:53:40] 2025-11-27 02:52:30,697 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 03:53:40] 2025-11-27 02:52:30,697 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 03:53:40] 2025-11-27 02:52:30,697 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 03:53:40] 2025-11-27 02:52:30,697 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 03:53:40] 2025-11-27 02:52:30,698 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 03:53:40] 2025-11-27 02:52:30,698 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 03:53:40] 2025-11-27 02:52:30,698 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 03:53:40] 2025-11-27 02:52:30,698 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 03:53:40] 2025-11-27 02:52:30,698 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 03:53:40] 2025-11-27 02:52:30,698 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 03:53:40] 2025-11-27 02:52:30,698 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 03:53:40] 2025-11-27 02:52:30,698 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 03:53:40] 2025-11-27 02:52:30,699 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 03:53:40] 2025-11-27 02:52:30,699 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 03:53:40] 2025-11-27 02:52:30,699 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 03:53:40] 2025-11-27 02:52:30,699 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 03:53:40] 2025-11-27 02:52:30,699 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 03:53:40] 2025-11-27 02:52:30,699 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 03:53:40] 2025-11-27 02:52:30,700 | INFO     | job 6895342777 has completed (purged errors)
[2025-11-27 03:53:40] 2025-11-27 02:52:30,700 | INFO     | overall cleanup function is called
[2025-11-27 03:53:40] 2025-11-27 02:52:31,717 | INFO     | --- collectZombieJob: --- 10, [5598]
[2025-11-27 03:53:40] 2025-11-27 02:52:31,718 | INFO     | zombie collector waiting for pid 5598
[2025-11-27 03:53:40] 2025-11-27 02:52:31,718 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 03:53:40] 2025-11-27 02:52:31,718 | INFO     | collected zombie processes
[2025-11-27 03:53:40] 2025-11-27 02:52:31,718 | INFO     | will attempt to kill all subprocesses of pid=5598
[2025-11-27 03:53:40] 2025-11-27 02:52:31,845 | INFO     | process IDs to be killed: [5598] (in reverse order)
[2025-11-27 03:53:40] 2025-11-27 02:52:32,561 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 03:53:40] 2025-11-27 02:52:32,561 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 03:53:40] 2025-11-27 02:52:32,564 | INFO     | did not find any defunct processes belonging to 5598
[2025-11-27 03:53:40] 2025-11-27 02:52:32,566 | INFO     | did not find any defunct processes belonging to 5598
[2025-11-27 03:53:40] 2025-11-27 02:52:32,609 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 03:53:40] 2025-11-27 02:52:32,609 | INFO     | ready for new job
[2025-11-27 03:53:40] 2025-11-27 02:52:32,609 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 03:53:40] 2025-11-27 02:52:32,614 | INFO     | ***************************************
[2025-11-27 03:53:40] 2025-11-27 02:52:32,614 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 03:53:40] 2025-11-27 02:52:32,614 | INFO     | ***************************************
[2025-11-27 03:53:40] 2025-11-27 02:52:32,614 | INFO     | 
[2025-11-27 03:53:40] 2025-11-27 02:52:32,615 | INFO     | pilot is running in a VM
[2025-11-27 03:53:40] 2025-11-27 02:52:32,615 | INFO     | architecture information:
[2025-11-27 03:53:40] 2025-11-27 02:52:32,623 | INFO     | executing command: cat /etc/os-release
[2025-11-27 03:53:40] 2025-11-27 02:52:32,921 | INFO     | cat /etc/os-release:
[2025-11-27 03:53:40] NAME="CentOS Linux"
[2025-11-27 03:53:40] VERSION="7 (Core)"
[2025-11-27 03:53:40] ID="centos"
[2025-11-27 03:53:40] ID_LIKE="rhel fedora"
[2025-11-27 03:53:40] VERSION_ID="7"
[2025-11-27 03:53:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 03:53:40] ANSI_COLOR="0;31"
[2025-11-27 03:53:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 03:53:40] HOME_URL="https://www.centos.org/"
[2025-11-27 03:53:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 03:53:40] 
[2025-11-27 03:53:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 03:53:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 03:53:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 03:53:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 03:53:40] 
[2025-11-27 03:53:40] 2025-11-27 02:52:32,921 | INFO     | ***************************************
[2025-11-27 03:53:40] 2025-11-27 02:52:33,425 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-11-27 03:53:40] 2025-11-27 02:52:33,729 | INFO     | sufficient remaining disk space (495348350976 B)
[2025-11-27 03:53:40] 2025-11-27 02:52:33,729 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 03:53:40] 2025-11-27 02:52:33,729 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 03:53:40] 2025-11-27 02:52:33,730 | INFO     | update_server=False
[2025-11-27 03:53:40] 2025-11-27 02:52:33,730 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 03:53:40] 2025-11-27 02:52:33,730 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 03:53:40] 2025-11-27 02:52:33,787 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 03:53:40] 2025-11-27 02:52:33,788 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 03:53:40] 2025-11-27 02:52:33,788 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:53:40] 2025-11-27 02:52:33,788 | INFO     | will abort loop
[2025-11-27 03:53:40] 2025-11-27 02:52:34,026 | INFO     | all data control threads have been joined
[2025-11-27 03:53:40] 2025-11-27 02:52:34,065 | INFO     | all payload control threads have been joined
[2025-11-27 03:53:40] 2025-11-27 02:52:34,088 | INFO     | all job control threads have been joined
[2025-11-27 03:53:40] 2025-11-27 02:52:34,736 | INFO     | [job] retrieve thread has finished
[2025-11-27 03:53:40] 2025-11-27 02:52:34,794 | INFO     | [job] job monitor thread has finished
[2025-11-27 03:53:40] 2025-11-27 02:52:34,888 | INFO     | [payload] failed_post thread has finished
[2025-11-27 03:53:40] 2025-11-27 02:52:35,032 | INFO     | [data] control thread has finished
[2025-11-27 03:53:40] 2025-11-27 02:52:35,039 | INFO     | [job] validate thread has finished
[2025-11-27 03:53:40] 2025-11-27 02:52:35,072 | INFO     | [payload] control thread has finished
[2025-11-27 03:53:40] 2025-11-27 02:52:35,095 | INFO     | [job] control thread has finished
[2025-11-27 03:53:40] 2025-11-27 02:52:35,110 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 03:53:40] 2025-11-27 02:52:35,404 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 03:53:40] 2025-11-27 02:52:35,510 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 03:53:40] 2025-11-27 02:52:35,686 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:53:40] 2025-11-27 02:52:35,737 | INFO     | [data] copytool_out thread has finished
[2025-11-27 03:53:40] 2025-11-27 02:52:35,744 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 03:53:40] 2025-11-27 02:52:35,761 | INFO     | [payload] validate_post thread has finished
[2025-11-27 03:53:40] 2025-11-27 02:52:36,170 | INFO     | [data] copytool_in thread has finished
[2025-11-27 03:53:40] 2025-11-27 02:52:36,210 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 03:53:40] 2025-11-27 02:52:36,692 | INFO     | [job] queue monitor thread has finished
[2025-11-27 03:53:40] 2025-11-27 02:52:39,521 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 03:53:40] 2025-11-27 02:53:03,207 | INFO     | PID=31464 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 03:53:40] 2025-11-27 02:53:03,208 | INFO     | .. there are 9 such processes running
[2025-11-27 03:53:40] 2025-11-27 02:53:03,208 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 03:53:40] 2025-11-27 02:53:03,208 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 03:53:40] 2025-11-27 02:53:03,208 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 03:53:40] 2025-11-27 02:53:29,956 | INFO     | [monitor] cgroup control has ended
[2025-11-27 03:53:40] 2025-11-27 02:53:31,905 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140573087102784)>', '<ExcThread(monitor, started 140572501194496)>']
[2025-11-27 03:53:40] 2025-11-27 02:53:32,383 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 03:53:40] 2025-11-27 02:53:32,384 | INFO     | [monitor] control thread has ended
[2025-11-27 03:53:40] 2025-11-27 02:53:36,930 | INFO     | all workflow threads have been joined
[2025-11-27 03:53:40] 2025-11-27 02:53:36,931 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 03:53:40] 2025-11-27 02:53:36,931 | INFO     | traces error code: 0
[2025-11-27 03:53:40] 2025-11-27 02:53:36,931 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 03:53:40] 2025-11-27 02:53:37,158 [wrapper] ==== pilot stdout END ====
[2025-11-27 03:53:40] 2025-11-27 02:53:37,234 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 03:53:40] 2025-11-27 02:53:37,277 [wrapper] pilotpid: 31464
[2025-11-27 03:53:40] 2025-11-27 02:53:37,343 [wrapper] Pilot exit status: 0
[2025-11-27 03:53:40] 2025-11-27 02:53:37,501 [wrapper] pandaids: 6895342777
[2025-11-27 03:53:40] 2025-11-27 02:53:37,764 [wrapper] cleanup supervisor_pilot  8292 31465
[2025-11-27 03:53:40] 2025-11-27 02:53:37,850 [wrapper] Test setup, not cleaning
[2025-11-27 03:53:40] 2025-11-27 02:53:37,923 [wrapper] apfmon messages muted
[2025-11-27 03:53:40] 2025-11-27 02:53:37,990 [wrapper] ==== wrapper stdout END ====
[2025-11-27 03:53:40] 2025-11-27 02:53:38,081 [wrapper] ==== wrapper stderr END ====
[2025-11-27 03:53:40]  *** Error codes and diagnostics ***
[2025-11-27 03:53:40]     "exeErrorCode": 0,
[2025-11-27 03:53:40]     "exeErrorDiag": "",
[2025-11-27 03:53:40]     "pilotErrorCode": 0,
[2025-11-27 03:53:40]     "pilotErrorDiag": "",
[2025-11-27 03:53:40]  *** Listing of results directory ***
[2025-11-27 03:53:40] total 1324792
[2025-11-27 03:53:40] -rw-r--r--. 1 boinc boinc      5112 Nov 22 16:34 queuedata.json
[2025-11-27 03:53:40] -rwx------. 1 boinc boinc     36292 Nov 22 16:36 runpilot2-wrapper.sh
[2025-11-27 03:53:40] -rw-r--r--. 1 boinc boinc    576529 Nov 22 16:36 pilot3.tar.gz
[2025-11-27 03:53:40] -rw-r--r--. 1 boinc boinc       100 Nov 26 04:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 03:53:40] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 04:37 run_atlas
[2025-11-27 03:53:40] -rw-r--r--. 1 boinc boinc       105 Nov 26 04:37 job.xml
[2025-11-27 03:53:40] -rw-r--r--. 2 boinc boinc 409529554 Nov 26 04:37 EVNT.47483658._000412.pool.root.1
[2025-11-27 03:53:40] -rw-r--r--. 2 boinc boinc     15847 Nov 26 04:37 start_atlas.sh
[2025-11-27 03:53:40] drwxrwx--x. 2 boinc boinc        68 Nov 26 04:37 shared
[2025-11-27 03:53:40] -rw-r--r--. 2 boinc boinc    590099 Nov 26 04:37 input.tar.gz
[2025-11-27 03:53:40] -rw-r--r--. 1 boinc boinc      6393 Nov 26 04:37 init_data.xml
[2025-11-27 03:53:40] -rw-r--r--. 1 boinc boinc         0 Nov 26 04:37 boinc_lockfile
[2025-11-27 03:53:40] -rw-r--r--. 1 boinc boinc      2781 Nov 26 04:37 pandaJob.out
[2025-11-27 03:53:40] -rw-------. 1 boinc boinc    991877 Nov 26 04:41 agis_schedconf.cvmfs.json
[2025-11-27 03:53:40] drwx------. 5 boinc boinc      4096 Nov 26 04:41 pilot3
[2025-11-27 03:53:40] -rw-r--r--. 1 boinc boinc       533 Nov 27 03:31 boinc_task_state.xml
[2025-11-27 03:53:40] -rw-------. 1 boinc boinc 916075006 Nov 27 03:49 HITS.47556137._004071.pool.root.1
[2025-11-27 03:53:40] -rw-------. 1 boinc boinc      1028 Nov 27 03:50 memory_monitor_summary.json
[2025-11-27 03:53:40] -rw-------. 1 boinc boinc   1516240 Nov 27 03:50 agis_ddmendpoints.agis.ALL.json
[2025-11-27 03:53:40] -rw-------. 1 boinc boinc   2436066 Nov 27 03:50 log.47556137._004071.job.log.tgz.1
[2025-11-27 03:53:40] -rw-------. 1 boinc boinc        95 Nov 27 03:52 pilot_heartbeat.json
[2025-11-27 03:53:40] -rw-------. 1 boinc boinc      8637 Nov 27 03:52 heartbeat.json
[2025-11-27 03:53:40] -rw-r--r--. 1 boinc boinc      8192 Nov 27 03:53 boinc_mmap_file
[2025-11-27 03:53:40] -rw-r--r--. 1 boinc boinc        29 Nov 27 03:53 wrapper_checkpoint.txt
[2025-11-27 03:53:40] -rw-------. 1 boinc boinc      5071 Nov 27 03:53 pilotlog.txt
[2025-11-27 03:53:40] -rw-------. 1 boinc boinc  11101437 Nov 27 03:53 log.47556137._004071.job.log.1
[2025-11-27 03:53:40] -rw-------. 1 boinc boinc       353 Nov 27 03:53 output.list
[2025-11-27 03:53:40] -rw-r--r--. 1 boinc boinc       620 Nov 27 03:53 runtime_log
[2025-11-27 03:53:40] -rw-------. 1 boinc boinc  13557760 Nov 27 03:53 result.tar.gz
[2025-11-27 03:53:40] -rw-r--r--. 1 boinc boinc      8833 Nov 27 03:53 runtime_log.err
[2025-11-27 03:53:40] -rw-------. 1 boinc boinc       662 Nov 27 03:53 7wNKDm2p4g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmZEKKDmkNqMTo.diag
[2025-11-27 03:53:40] -rw-r--r--. 1 boinc boinc     21192 Nov 27 03:53 stderr.txt
[2025-11-27 03:53:40] HITS file was successfully produced:
[2025-11-27 03:53:40] -rw-------. 1 boinc boinc 916075006 Nov 27 03:49 shared/HITS.pool.root.1
[2025-11-27 03:53:40]  *** Contents of shared directory: ***
[2025-11-27 03:53:40] total 1308376
[2025-11-27 03:53:40] -rw-r--r--. 2 boinc boinc 409529554 Nov 26 04:37 ATLAS.root_0
[2025-11-27 03:53:40] -rw-r--r--. 2 boinc boinc     15847 Nov 26 04:37 start_atlas.sh
[2025-11-27 03:53:40] -rw-r--r--. 2 boinc boinc    590099 Nov 26 04:37 input.tar.gz
[2025-11-27 03:53:40] -rw-------. 1 boinc boinc 916075006 Nov 27 03:49 HITS.pool.root.1
[2025-11-27 03:53:40] -rw-------. 1 boinc boinc  13557760 Nov 27 03:53 result.tar.gz
03:53:41 (27637): run_atlas exited; CPU time 314308.189537
03:53:41 (27637): called boinc_finish(0)

</stderr_txt>
]]>

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