Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:46 (2038324): wrapper (7.7.26015): starting
00:02:46 (2038324): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 00:02:46] Arguments: --nthreads 12
[2025-11-24 00:02:46] Threads: 12
[2025-11-24 00:02:46] Checking for CVMFS
[2025-11-24 00:02:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:02:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:02:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:02:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:02:50] 2.13.2.0 37103 30386 213852 153233 3 494 25602862 40960001 13706 16776704 0 44496386 99.588 47591031 23550 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 00:02:50] CVMFS is ok
[2025-11-24 00:02:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:02:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:02:50] Further information can be found at the LHC@home message board.
[2025-11-24 00:02:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:02:50] Checking for apptainer binary...
[2025-11-24 00:02:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:02:50] Running /usr/bin/apptainer --version
[2025-11-24 00:02:50] apptainer version 1.4.4-1.el9
[2025-11-24 00:02:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:02:52] c-211-9.aglt2.org
[2025-11-24 00:02:52] apptainer works
[2025-11-24 00:02:52] Set ATHENA_PROC_NUMBER=12
[2025-11-24 00:02:52] Set ATHENA_CORE_NUMBER=12
[2025-11-24 00:02:53] Starting ATLAS job with PandaID=6895342731
[2025-11-24 00:02:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 17:19:25]  *** The last 200 lines of the pilot log: ***
[2025-11-25 17:19:25] 2025-11-25 22:17:47,626 | INFO     | monitor loop #7385: job 0:6895342731 is in state 'finished'
[2025-11-25 17:19:25] 2025-11-25 22:17:47,627 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 17:19:25] 2025-11-25 22:17:48,290 | INFO     | time since job start (148379s) is within the limit (172800.0s)
[2025-11-25 17:19:25] 2025-11-25 22:17:50,134 | INFO     | monitor loop #7386: job 0:6895342731 is in state 'finished'
[2025-11-25 17:19:25] 2025-11-25 22:17:50,135 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 17:19:25] 2025-11-25 22:17:50,303 | INFO     | time since job start (148381s) is within the limit (172800.0s)
[2025-11-25 17:19:25] 2025-11-25 22:17:52,310 | INFO     | time since job start (148383s) is within the limit (172800.0s)
[2025-11-25 17:19:25] 2025-11-25 22:17:52,677 | INFO     | monitor loop #7387: job 0:6895342731 is in state 'finished'
[2025-11-25 17:19:25] 2025-11-25 22:17:52,688 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 17:19:25] 2025-11-25 22:17:54,319 | INFO     | time since job start (148385s) is within the limit (172800.0s)
[2025-11-25 17:19:25] 2025-11-25 22:17:55,209 | INFO     | monitor loop #7388: job 0:6895342731 is in state 'finished'
[2025-11-25 17:19:25] 2025-11-25 22:17:55,209 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 17:19:25] 2025-11-25 22:17:55,497 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 17:19:25] 2025-11-25 22:17:55,619 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2533.795583333334
[2025-11-25 17:19:25] 2025-11-25 22:17:55,953 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895342731/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 17:19:25] 2025-11-25 22:17:55,954 | INFO     | extracted standard info from prmon json
[2025-11-25 17:19:25] 2025-11-25 22:17:55,954 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 17:19:25] 2025-11-25 22:17:55,954 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 17:19:25] 2025-11-25 22:17:56,097 | INFO     | fitting pss+swap vs Time
[2025-11-25 17:19:25] 2025-11-25 22:17:56,109 | INFO     | sum of square deviations: 4438606001732.39
[2025-11-25 17:19:25] 2025-11-25 22:17:56,387 | INFO     | time since job start (148387s) is within the limit (172800.0s)
[2025-11-25 17:19:25] 2025-11-25 22:17:56,655 | INFO     | sum of deviations: 304465509773210.94
[2025-11-25 17:19:25] 2025-11-25 22:17:56,656 | INFO     | mean x: 1764034930.3706756
[2025-11-25 17:19:25] 2025-11-25 22:17:56,656 | INFO     | mean y: 5906654.004530477
[2025-11-25 17:19:25] 2025-11-25 22:17:56,668 | INFO     | intersect: -120997803547.67429
[2025-11-25 17:19:25] 2025-11-25 22:17:56,672 | INFO     | chi2: 693.1982478287663
[2025-11-25 17:19:25] 2025-11-25 22:17:56,684 | INFO     | sum of square deviations: 4411247543890.872
[2025-11-25 17:19:25] 2025-11-25 22:17:57,699 | INFO     | sum of deviations: 306522871476901.0
[2025-11-25 17:19:25] 2025-11-25 22:17:57,736 | INFO     | mean x: 1764034777.8848536
[2025-11-25 17:19:25] 2025-11-25 22:17:57,737 | INFO     | mean y: 5918120.503095336
[2025-11-25 17:19:25] 2025-11-25 22:17:57,737 | INFO     | intersect: -122570972004.65446
[2025-11-25 17:19:25] 2025-11-25 22:17:57,755 | INFO     | chi2: 737.9965212593418
[2025-11-25 17:19:25] 2025-11-25 22:17:57,755 | INFO     | current chi2=737.9965212593418 (change=-6.462548566862727 %)
[2025-11-25 17:19:25] 2025-11-25 22:17:57,756 | INFO     | right removable region: 2422
[2025-11-25 17:19:25] 2025-11-25 22:17:57,765 | INFO     | sum of square deviations: 4411237367870.876
[2025-11-25 17:19:25] 2025-11-25 22:17:57,785 | INFO     | monitor loop #7389: job 0:6895342731 is in state 'finished'
[2025-11-25 17:19:25] 2025-11-25 22:17:57,786 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 17:19:25] 2025-11-25 22:17:58,179 | INFO     | sum of deviations: 302341086196703.5
[2025-11-25 17:19:25] 2025-11-25 22:17:58,179 | INFO     | mean x: 1764035082.8848536
[2025-11-25 17:19:25] 2025-11-25 22:17:58,180 | INFO     | mean y: 5918492.271151465
[2025-11-25 17:19:25] 2025-11-25 22:17:58,180 | INFO     | intersect: -120898997423.85423
[2025-11-25 17:19:25] 2025-11-25 22:17:58,183 | INFO     | chi2: 683.4587628684765
[2025-11-25 17:19:25] 2025-11-25 22:17:58,184 | INFO     | current chi2=683.4587628684765 (change=1.405007152109199 %)
[2025-11-25 17:19:25] 2025-11-25 22:17:58,184 | INFO     | left removable region: 10
[2025-11-25 17:19:25] 2025-11-25 22:17:58,188 | INFO     | sum of square deviations: 4351434960400.0957
[2025-11-25 17:19:25] 2025-11-25 22:17:59,036 | INFO     | sum of deviations: 302747550645031.4
[2025-11-25 17:19:25] 2025-11-25 22:17:59,037 | INFO     | mean x: 1764035052.4162521
[2025-11-25 17:19:25] 2025-11-25 22:17:59,037 | INFO     | mean y: 5943462.713930348
[2025-11-25 17:19:25] 2025-11-25 22:17:59,037 | INFO     | intersect: -122725361550.72368
[2025-11-25 17:19:25] 2025-11-25 22:17:59,044 | INFO     | chi2: 732.0310161598094
[2025-11-25 17:19:25] 2025-11-25 22:17:59,045 | INFO     | current memory leak: 69.57 B/s (using 2412 data points, chi2=732.03)
[2025-11-25 17:19:25] 2025-11-25 22:17:59,053 | INFO     | could have reported an average CPU frequency of 2590 MHz (83 samples)
[2025-11-25 17:19:25] 2025-11-25 22:17:59,053 | INFO     | ..............................
[2025-11-25 17:19:25] 2025-11-25 22:17:59,053 | INFO     | . Timing measurements:
[2025-11-25 17:19:25] 2025-11-25 22:17:59,053 | INFO     | . get job = 1 s
[2025-11-25 17:19:25] 2025-11-25 22:17:59,053 | INFO     | . initial setup = 12 s
[2025-11-25 17:19:25] 2025-11-25 22:17:59,054 | INFO     | . payload setup = 67 s
[2025-11-25 17:19:25] 2025-11-25 22:17:59,054 | INFO     | . stage-in = 0 s
[2025-11-25 17:19:25] 2025-11-25 22:17:59,054 | INFO     | . payload execution = 148127 s
[2025-11-25 17:19:25] 2025-11-25 22:17:59,054 | INFO     | . stage-out = 35 s
[2025-11-25 17:19:25] 2025-11-25 22:17:59,054 | INFO     | . log creation = 12 s
[2025-11-25 17:19:25] 2025-11-25 22:17:59,078 | INFO     | ..............................
[2025-11-25 17:19:25] 2025-11-25 22:17:59,992 | INFO     | 
[2025-11-25 17:19:25] 2025-11-25 22:18:00,036 | INFO     | job summary report
[2025-11-25 17:19:25] 2025-11-25 22:18:00,036 | INFO     | --------------------------------------------------
[2025-11-25 17:19:25] 2025-11-25 22:18:00,037 | INFO     | PanDA job id: 6895342731
[2025-11-25 17:19:25] 2025-11-25 22:18:00,037 | INFO     | task id: 47556149
[2025-11-25 17:19:25] 2025-11-25 22:18:00,037 | INFO     | errors: (none)
[2025-11-25 17:19:25] 2025-11-25 22:18:00,037 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 17:19:25] 2025-11-25 22:18:00,037 | INFO     | pilot state: finished 
[2025-11-25 17:19:25] 2025-11-25 22:18:00,037 | INFO     | transexitcode: 0
[2025-11-25 17:19:25] 2025-11-25 22:18:00,038 | INFO     | exeerrorcode: 0
[2025-11-25 17:19:25] 2025-11-25 22:18:00,038 | INFO     | exeerrordiag: 
[2025-11-25 17:19:25] 2025-11-25 22:18:00,038 | INFO     | exitcode: 0
[2025-11-25 17:19:25] 2025-11-25 22:18:00,038 | INFO     | exitmsg: OK
[2025-11-25 17:19:25] 2025-11-25 22:18:00,038 | INFO     | cpuconsumptiontime: 363226 s
[2025-11-25 17:19:25] 2025-11-25 22:18:00,038 | INFO     | nevents: 1000
[2025-11-25 17:19:25] 2025-11-25 22:18:00,038 | INFO     | neventsw: 0
[2025-11-25 17:19:25] 2025-11-25 22:18:00,038 | INFO     | pid: 2050894
[2025-11-25 17:19:25] 2025-11-25 22:18:00,039 | INFO     | pgrp: 2050894
[2025-11-25 17:19:25] 2025-11-25 22:18:00,039 | INFO     | corecount: 12
[2025-11-25 17:19:25] 2025-11-25 22:18:00,039 | INFO     | event service: False
[2025-11-25 17:19:25] 2025-11-25 22:18:00,039 | INFO     | sizes: {0: 2298627, 2: 2298826, 3: 2298826, 4: 2298854, 16: 2298882, 28: 2298910, 40: 2299066, 46: 2299356, 51: 2299384, 148202: 2389344, 148204: 2389343, 148240: 
[2025-11-25 17:19:25] 2025-11-25 22:18:00,039 | INFO     | --------------------------------------------------
[2025-11-25 17:19:25] 2025-11-25 22:18:00,039 | INFO     | 
[2025-11-25 17:19:25] 2025-11-25 22:18:00,039 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 17:19:25] 2025-11-25 22:18:00,346 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 17:19:25] 2025-11-25 22:18:00,346 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 17:19:25] 2025-11-25 22:18:00,346 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 17:19:25] 2025-11-25 22:18:00,346 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 17:19:25] 2025-11-25 22:18:00,346 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 17:19:25] 2025-11-25 22:18:00,347 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 17:19:25] 2025-11-25 22:18:00,347 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 17:19:25] 2025-11-25 22:18:00,347 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 17:19:25] 2025-11-25 22:18:00,347 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 17:19:25] 2025-11-25 22:18:00,347 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 17:19:25] 2025-11-25 22:18:00,347 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 17:19:25] 2025-11-25 22:18:00,347 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 17:19:25] 2025-11-25 22:18:00,347 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 17:19:25] 2025-11-25 22:18:00,347 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 17:19:25] 2025-11-25 22:18:00,347 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 17:19:25] 2025-11-25 22:18:00,348 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 17:19:25] 2025-11-25 22:18:00,348 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 17:19:25] 2025-11-25 22:18:00,348 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 17:19:25] 2025-11-25 22:18:00,348 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 17:19:25] 2025-11-25 22:18:00,348 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 17:19:25] 2025-11-25 22:18:00,348 | INFO     | job 6895342731 has completed (purged errors)
[2025-11-25 17:19:25] 2025-11-25 22:18:00,348 | INFO     | overall cleanup function is called
[2025-11-25 17:19:25] 2025-11-25 22:18:00,377 | INFO     | PID=2042322 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 17:19:25] 2025-11-25 22:18:00,377 | INFO     | .. there are 17 such processes running
[2025-11-25 17:19:25] 2025-11-25 22:18:01,487 | INFO     | --- collectZombieJob: --- 10, [2050894]
[2025-11-25 17:19:25] 2025-11-25 22:18:01,487 | INFO     | zombie collector waiting for pid 2050894
[2025-11-25 17:19:25] 2025-11-25 22:18:01,488 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 17:19:25] 2025-11-25 22:18:01,488 | INFO     | collected zombie processes
[2025-11-25 17:19:25] 2025-11-25 22:18:01,488 | INFO     | will attempt to kill all subprocesses of pid=2050894
[2025-11-25 17:19:25] 2025-11-25 22:18:02,438 | INFO     | process IDs to be killed: [2050894] (in reverse order)
[2025-11-25 17:19:25] 2025-11-25 22:18:03,281 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 17:19:25] 2025-11-25 22:18:03,281 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 17:19:25] 2025-11-25 22:18:03,403 | INFO     | did not find any defunct processes belonging to 2050894
[2025-11-25 17:19:25] 2025-11-25 22:18:03,461 | INFO     | did not find any defunct processes belonging to 2050894
[2025-11-25 17:19:25] 2025-11-25 22:18:03,551 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 17:19:25] 2025-11-25 22:18:03,552 | INFO     | ready for new job
[2025-11-25 17:19:25] 2025-11-25 22:18:03,552 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 17:19:25] 2025-11-25 22:18:03,561 | INFO     | ***************************************
[2025-11-25 17:19:25] 2025-11-25 22:18:03,561 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 17:19:25] 2025-11-25 22:18:03,561 | INFO     | ***************************************
[2025-11-25 17:19:25] 2025-11-25 22:18:03,562 | INFO     | 
[2025-11-25 17:19:25] 2025-11-25 22:18:03,578 | INFO     | architecture information:
[2025-11-25 17:19:25] 2025-11-25 22:18:03,593 | INFO     | executing command: cat /etc/os-release
[2025-11-25 17:19:25] 2025-11-25 22:18:03,690 | INFO     | cat /etc/os-release:
[2025-11-25 17:19:25] NAME="CentOS Linux"
[2025-11-25 17:19:25] VERSION="7 (Core)"
[2025-11-25 17:19:25] ID="centos"
[2025-11-25 17:19:25] ID_LIKE="rhel fedora"
[2025-11-25 17:19:25] VERSION_ID="7"
[2025-11-25 17:19:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 17:19:25] ANSI_COLOR="0;31"
[2025-11-25 17:19:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 17:19:25] HOME_URL="https://www.centos.org/"
[2025-11-25 17:19:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 17:19:25] 
[2025-11-25 17:19:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 17:19:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 17:19:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 17:19:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 17:19:25] 
[2025-11-25 17:19:25] 2025-11-25 22:18:03,690 | INFO     | ***************************************
[2025-11-25 17:19:25] 2025-11-25 22:18:04,193 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 17:19:25] 2025-11-25 22:18:04,282 | INFO     | sufficient remaining disk space (59468939264 B)
[2025-11-25 17:19:25] 2025-11-25 22:18:04,282 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 17:19:25] 2025-11-25 22:18:04,282 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 17:19:25] 2025-11-25 22:18:04,282 | INFO     | update_server=False
[2025-11-25 17:19:25] 2025-11-25 22:18:04,282 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 17:19:25] 2025-11-25 22:18:04,283 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 17:19:25] 2025-11-25 22:18:04,283 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 17:19:25] 2025-11-25 22:18:04,283 | INFO     | aborting loop
[2025-11-25 17:19:25] 2025-11-25 22:18:04,558 | INFO     | all data control threads have been joined
[2025-11-25 17:19:25] 2025-11-25 22:18:04,838 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 17:19:25] 2025-11-25 22:18:05,005 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 17:19:25] 2025-11-25 22:18:05,076 | INFO     | all job control threads have been joined
[2025-11-25 17:19:25] 2025-11-25 22:18:05,290 | INFO     | [job] retrieve thread has finished
[2025-11-25 17:19:25] 2025-11-25 22:18:05,291 | INFO     | [job] job monitor thread has finished
[2025-11-25 17:19:25] 2025-11-25 22:18:05,564 | INFO     | [data] control thread has finished
[2025-11-25 17:19:25] 2025-11-25 22:18:05,574 | INFO     | [job] validate thread has finished
[2025-11-25 17:19:25] 2025-11-25 22:18:05,590 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 17:19:25] 2025-11-25 22:18:05,707 | INFO     | all payload control threads have been joined
[2025-11-25 17:19:25] 2025-11-25 22:18:06,050 | INFO     | [payload] validate_post thread has finished
[2025-11-25 17:19:25] 2025-11-25 22:18:06,082 | INFO     | [job] control thread has finished
[2025-11-25 17:19:25] 2025-11-25 22:18:06,089 | INFO     | [job] queue monitor thread has finished
[2025-11-25 17:19:25] 2025-11-25 22:18:06,268 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 17:19:25] 2025-11-25 22:18:06,302 | INFO     | [data] copytool_out thread has finished
[2025-11-25 17:19:25] 2025-11-25 22:18:06,303 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 17:19:25] 2025-11-25 22:18:06,305 | INFO     | [data] copytool_in thread has finished
[2025-11-25 17:19:25] 2025-11-25 22:18:06,305 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 17:19:25] 2025-11-25 22:18:06,669 | INFO     | [payload] failed_post thread has finished
[2025-11-25 17:19:25] 2025-11-25 22:18:06,720 | INFO     | [payload] control thread has finished
[2025-11-25 17:19:25] 2025-11-25 22:18:08,895 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 17:19:25] 2025-11-25 22:18:41,227 | INFO     | PID=2042322 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 17:19:25] 2025-11-25 22:18:41,227 | INFO     | .. there are 17 such processes running
[2025-11-25 17:19:25] 2025-11-25 22:18:41,227 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 17:19:25] 2025-11-25 22:18:41,227 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 17:19:25] 2025-11-25 22:18:41,227 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 17:19:25] 2025-11-25 22:18:50,629 | INFO     | [monitor] cgroup control has ended
[2025-11-25 17:19:25] 2025-11-25 22:18:51,923 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140309482366784)>', '<ExcThread(monitor, started 140308310382336)>']
[2025-11-25 17:19:25] 2025-11-25 22:18:52,298 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 17:19:25] 2025-11-25 22:18:52,298 | INFO     | [monitor] control thread has ended
[2025-11-25 17:19:25] 2025-11-25 22:18:57,088 | INFO     | all workflow threads have been joined
[2025-11-25 17:19:25] 2025-11-25 22:18:57,088 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 17:19:25] 2025-11-25 22:18:57,148 | INFO     | traces error code: 0
[2025-11-25 17:19:25] 2025-11-25 22:18:57,149 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 17:19:25] 2025-11-25 22:19:02,611 [wrapper] ==== pilot stdout END ====
[2025-11-25 17:19:25] 2025-11-25 22:19:02,628 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 17:19:25] 2025-11-25 22:19:02,645 [wrapper] pilotpid: 2042322
[2025-11-25 17:19:25] 2025-11-25 22:19:02,672 [wrapper] Pilot exit status: 0
[2025-11-25 17:19:25] 2025-11-25 22:19:02,787 [wrapper] pandaids: 6895342731
[2025-11-25 17:19:25] 2025-11-25 22:19:03,079 [wrapper] cleanup supervisor_pilot 2313652 2042323
[2025-11-25 17:19:25] 2025-11-25 22:19:03,096 [wrapper] Test setup, not cleaning
[2025-11-25 17:19:25] 2025-11-25 22:19:03,121 [wrapper] apfmon messages muted
[2025-11-25 17:19:25] 2025-11-25 22:19:03,151 [wrapper] ==== wrapper stdout END ====
[2025-11-25 17:19:25] 2025-11-25 22:19:03,153 [wrapper] ==== wrapper stderr END ====
[2025-11-25 17:19:25]  *** Error codes and diagnostics ***
[2025-11-25 17:19:25]     "exeErrorCode": 0,
[2025-11-25 17:19:25]     "exeErrorDiag": "",
[2025-11-25 17:19:25]     "pilotErrorCode": 0,
[2025-11-25 17:19:25]     "pilotErrorDiag": "",
[2025-11-25 17:19:25]  *** Listing of results directory ***
[2025-11-25 17:19:25] total 1357944
[2025-11-25 17:19:25] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 10:04 pilot3.tar.gz
[2025-11-25 17:19:25] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 10:17 queuedata.json
[2025-11-25 17:19:25] -rwx------. 1 boincer umatlas     36292 Nov 22 10:18 runpilot2-wrapper.sh
[2025-11-25 17:19:25] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 17:19:25] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:02 run_atlas
[2025-11-25 17:19:25] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:02 job.xml
[2025-11-25 17:19:25] -rw-r--r--. 2 boincer umatlas 411090994 Nov 24 00:02 EVNT.47483658._001096.pool.root.1
[2025-11-25 17:19:25] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:02 shared
[2025-11-25 17:19:25] -rw-r--r--. 2 boincer umatlas    590105 Nov 24 00:02 input.tar.gz
[2025-11-25 17:19:25] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:02 start_atlas.sh
[2025-11-25 17:19:25] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:02 boinc_lockfile
[2025-11-25 17:19:25] -rw-r--r--. 1 boincer umatlas      2781 Nov 24 00:02 pandaJob.out
[2025-11-25 17:19:25] -rw-------. 1 boincer umatlas        57 Nov 24 00:02 setup.sh.local
[2025-11-25 17:19:25] -rw-------. 1 boincer umatlas    989786 Nov 24 00:04 agis_schedconf.cvmfs.json
[2025-11-25 17:19:25] drwx------. 5 boincer umatlas      4096 Nov 24 00:04 pilot3
[2025-11-25 17:19:25] -rw-r--r--. 1 boincer umatlas       534 Nov 25 16:24 boinc_task_state.xml
[2025-11-25 17:19:25] -rw-------. 1 boincer umatlas 935058615 Nov 25 17:12 HITS.47556149._000821.pool.root.1
[2025-11-25 17:19:25] -rw-r--r--. 1 boincer umatlas      6616 Nov 25 17:13 init_data.xml
[2025-11-25 17:19:25] -rw-------. 1 boincer umatlas      1090 Nov 25 17:16 memory_monitor_summary.json
[2025-11-25 17:19:25] -rw-------. 1 boincer umatlas   1516240 Nov 25 17:16 agis_ddmendpoints.agis.ALL.json
[2025-11-25 17:19:25] -rw-------. 1 boincer umatlas   3514226 Nov 25 17:17 log.47556149._000821.job.log.tgz.1
[2025-11-25 17:19:25] -rw-------. 1 boincer umatlas        95 Nov 25 17:17 pilot_heartbeat.json
[2025-11-25 17:19:25] -rw-------. 1 boincer umatlas      8710 Nov 25 17:17 heartbeat.json
[2025-11-25 17:19:25] -rw-------. 1 boincer umatlas      4824 Nov 25 17:18 pilotlog.txt
[2025-11-25 17:19:25] -rw-------. 1 boincer umatlas  16718308 Nov 25 17:19 log.47556149._000821.job.log.1
[2025-11-25 17:19:25] -rw-------. 1 boincer umatlas       353 Nov 25 17:19 output.list
[2025-11-25 17:19:25] -rw-r--r--. 1 boincer umatlas       620 Nov 25 17:19 runtime_log
[2025-11-25 17:19:25] -rw-------. 1 boincer umatlas  20254720 Nov 25 17:19 result.tar.gz
[2025-11-25 17:19:25] -rw-r--r--. 1 boincer umatlas      9341 Nov 25 17:19 runtime_log.err
[2025-11-25 17:19:25] -rw-------. 1 boincer umatlas       668 Nov 25 17:19 a8ONDmzY4g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmo9HKDmxkwdym.diag
[2025-11-25 17:19:25] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 17:19 boinc_mmap_file
[2025-11-25 17:19:25] -rw-r--r--. 1 boincer umatlas        30 Nov 25 17:19 wrapper_checkpoint.txt
[2025-11-25 17:19:25] -rw-r--r--. 1 boincer umatlas     21908 Nov 25 17:19 stderr.txt
[2025-11-25 17:19:25] HITS file was successfully produced:
[2025-11-25 17:19:25] -rw-------. 1 boincer umatlas 935058615 Nov 25 17:12 shared/HITS.pool.root.1
[2025-11-25 17:19:25]  *** Contents of shared directory: ***
[2025-11-25 17:19:25] total 1334988
[2025-11-25 17:19:25] -rw-r--r--. 2 boincer umatlas 411090994 Nov 24 00:02 ATLAS.root_0
[2025-11-25 17:19:25] -rw-r--r--. 2 boincer umatlas    590105 Nov 24 00:02 input.tar.gz
[2025-11-25 17:19:25] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:02 start_atlas.sh
[2025-11-25 17:19:25] -rw-------. 1 boincer umatlas 935058615 Nov 25 17:12 HITS.pool.root.1
[2025-11-25 17:19:25] -rw-------. 1 boincer umatlas  20254720 Nov 25 17:19 result.tar.gz
17:19:27 (2038324): run_atlas exited; CPU time 366567.401705
17:19:27 (2038324): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN