Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:18:19 (152799): wrapper (7.7.26015): starting
06:18:19 (152799): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 06:18:19] Arguments: --nthreads 3
[2025-11-27 06:18:19] Threads: 3
[2025-11-27 06:18:19] Checking for CVMFS
[2025-11-27 06:18:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 06:18:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 06:18:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 06:18:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 06:18:19] 2.9.2.0 3026 1093 50636 153348 1 81 32947966 36864001 0 130560 0 386845 99.982 39857 659 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 06:18:19] CVMFS is ok
[2025-11-27 06:18:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 06:18:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 06:18:19] Further information can be found at the LHC@home message board.
[2025-11-27 06:18:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 06:18:19] Checking for apptainer binary...
[2025-11-27 06:18:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 06:18:19] Running /usr/bin/apptainer --version
[2025-11-27 06:18:19] apptainer version 1.4.1-1.1
[2025-11-27 06:18:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 06:18:19] cosA121
[2025-11-27 06:18:19] apptainer works
[2025-11-27 06:18:19] Set ATHENA_PROC_NUMBER=3
[2025-11-27 06:18:19] Set ATHENA_CORE_NUMBER=3
[2025-11-27 06:18:20] Starting ATLAS job with PandaID=6895334093
[2025-11-27 06:18:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 15:43:46]  *** The last 200 lines of the pilot log: ***
[2025-11-27 15:43:46] 2025-11-27 14:43:06,498 | INFO     | preparing for final server update for job 6895334093 in state='finished'
[2025-11-27 15:43:46] 2025-11-27 14:43:06,499 | INFO     | this job has now completed (state=finished)
[2025-11-27 15:43:46] 2025-11-27 14:43:06,499 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-27 15:43:46] 2025-11-27 14:43:06,499 | INFO     | log transfer has been attempted: DONE
[2025-11-27 15:43:46] 2025-11-27 14:43:06,499 | INFO     | job 6895334093 has finished - writing final server update
[2025-11-27 15:43:46] 2025-11-27 14:43:06,500 | INFO     | total number of processed events: 1000 (read)
[2025-11-27 15:43:46] 2025-11-27 14:43:06,501 | INFO     | executing command: lscpu
[2025-11-27 15:43:46] 2025-11-27 14:43:06,549 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 15:43:46] 2025-11-27 14:43:07,779 | INFO     | monitor loop #2573: job 0:6895334093 is in state 'finished'
[2025-11-27 15:43:46] 2025-11-27 14:43:07,779 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:43:46] 2025-11-27 14:43:08,350 | INFO     | time since job start (33878s) is within the limit (172800.0s)
[2025-11-27 15:43:46] 2025-11-27 14:43:10,282 | INFO     | monitor loop #2574: job 0:6895334093 is in state 'finished'
[2025-11-27 15:43:46] 2025-11-27 14:43:10,282 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:43:46] 2025-11-27 14:43:10,355 | INFO     | time since job start (33880s) is within the limit (172800.0s)
[2025-11-27 15:43:46] 2025-11-27 14:43:12,360 | INFO     | time since job start (33882s) is within the limit (172800.0s)
[2025-11-27 15:43:46] 2025-11-27 14:43:12,765 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 15:43:46] 2025-11-27 14:43:12,766 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 4065.469333333334
[2025-11-27 15:43:46] 2025-11-27 14:43:12,767 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6895334093/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 15:43:46] 2025-11-27 14:43:12,768 | INFO     | extracted standard info from prmon json
[2025-11-27 15:43:46] 2025-11-27 14:43:12,768 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 15:43:46] 2025-11-27 14:43:12,768 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 15:43:46] 2025-11-27 14:43:12,771 | INFO     | fitting pss+swap vs Time
[2025-11-27 15:43:46] 2025-11-27 14:43:12,771 | INFO     | sum of square deviations: 53009775310.0
[2025-11-27 15:43:46] 2025-11-27 14:43:12,774 | INFO     | sum of deviations: 3208931800105.999
[2025-11-27 15:43:46] 2025-11-27 14:43:12,774 | INFO     | mean x: 1764237633.0
[2025-11-27 15:43:46] 2025-11-27 14:43:12,774 | INFO     | mean y: 2613361.8162162164
[2025-11-27 15:43:46] 2025-11-27 14:43:12,774 | INFO     | intersect: -106795014252.52795
[2025-11-27 15:43:46] 2025-11-27 14:43:12,774 | INFO     | chi2: 20.19688283922929
[2025-11-27 15:43:46] 2025-11-27 14:43:12,775 | INFO     | sum of square deviations: 51589944037.5
[2025-11-27 15:43:46] 2025-11-27 14:43:12,777 | INFO     | sum of deviations: 3254741136300.4995
[2025-11-27 15:43:46] 2025-11-27 14:43:12,777 | INFO     | mean x: 1764237480.5
[2025-11-27 15:43:46] 2025-11-27 14:43:12,777 | INFO     | mean y: 2618217.918181818
[2025-11-27 15:43:46] 2025-11-27 14:43:12,777 | INFO     | intersect: -111300784201.21649
[2025-11-27 15:43:46] 2025-11-27 14:43:12,778 | INFO     | chi2: 18.56899507404078
[2025-11-27 15:43:46] 2025-11-27 14:43:12,778 | INFO     | current chi2=18.56899507404078 (change=8.06009411524926 %)
[2025-11-27 15:43:46] 2025-11-27 14:43:12,778 | INFO     | right removable region: 549
[2025-11-27 15:43:46] 2025-11-27 14:43:12,778 | INFO     | sum of square deviations: 51589944037.5
[2025-11-27 15:43:46] 2025-11-27 14:43:12,781 | INFO     | sum of deviations: 3054103808336.5005
[2025-11-27 15:43:46] 2025-11-27 14:43:12,781 | INFO     | mean x: 1764237785.5
[2025-11-27 15:43:46] 2025-11-27 14:43:12,781 | INFO     | mean y: 2629975.8527272725
[2025-11-27 15:43:46] 2025-11-27 14:43:12,781 | INFO     | intersect: -104439532930.74246
[2025-11-27 15:43:46] 2025-11-27 14:43:12,781 | INFO     | chi2: 18.07739913748595
[2025-11-27 15:43:46] 2025-11-27 14:43:12,781 | INFO     | current chi2=18.07739913748595 (change=10.49411297087178 %)
[2025-11-27 15:43:46] 2025-11-27 14:43:12,781 | INFO     | left removable region: 10
[2025-11-27 15:43:46] 2025-11-27 14:43:12,781 | INFO     | sum of square deviations: 48556035990.0
[2025-11-27 15:43:46] 2025-11-27 14:43:12,784 | INFO     | sum of deviations: 3001504201754.0
[2025-11-27 15:43:46] 2025-11-27 14:43:12,784 | INFO     | mean x: 1764237755.0
[2025-11-27 15:43:46] 2025-11-27 14:43:12,784 | INFO     | mean y: 2640570.6716141
[2025-11-27 15:43:46] 2025-11-27 14:43:12,784 | INFO     | intersect: -109054182676.1048
[2025-11-27 15:43:46] 2025-11-27 14:43:12,784 | INFO     | chi2: 16.13815792808648
[2025-11-27 15:43:46] 2025-11-27 14:43:12,784 | INFO     | current memory leak: 61.82 B/s (using 539 data points, chi2=16.14)
[2025-11-27 15:43:46] 2025-11-27 14:43:12,784 | INFO     | could have reported an average CPU frequency of 4285 MHz (22 samples)
[2025-11-27 15:43:46] 2025-11-27 14:43:12,784 | INFO     | ..............................
[2025-11-27 15:43:46] 2025-11-27 14:43:12,784 | INFO     | . Timing measurements:
[2025-11-27 15:43:46] 2025-11-27 14:43:12,785 | INFO     | . get job = 0 s
[2025-11-27 15:43:46] 2025-11-27 14:43:12,785 | INFO     | . initial setup = 1 s
[2025-11-27 15:43:46] 2025-11-27 14:43:12,785 | INFO     | . payload setup = 5 s
[2025-11-27 15:43:46] 2025-11-27 14:43:12,785 | INFO     | . stage-in = 0 s
[2025-11-27 15:43:46] 2025-11-27 14:43:12,785 | INFO     | . payload execution = 33846 s
[2025-11-27 15:43:46] 2025-11-27 14:43:12,785 | INFO     | . stage-out = 1 s
[2025-11-27 15:43:46] 2025-11-27 14:43:12,785 | INFO     | . log creation = 0 s
[2025-11-27 15:43:46] 2025-11-27 14:43:12,785 | INFO     | ..............................
[2025-11-27 15:43:46] 2025-11-27 14:43:13,204 | INFO     | 
[2025-11-27 15:43:46] 2025-11-27 14:43:13,205 | INFO     | job summary report
[2025-11-27 15:43:46] 2025-11-27 14:43:13,205 | INFO     | --------------------------------------------------
[2025-11-27 15:43:46] 2025-11-27 14:43:13,205 | INFO     | PanDA job id: 6895334093
[2025-11-27 15:43:46] 2025-11-27 14:43:13,205 | INFO     | task id: 47556149
[2025-11-27 15:43:46] 2025-11-27 14:43:13,205 | INFO     | errors: (none)
[2025-11-27 15:43:46] 2025-11-27 14:43:13,206 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 15:43:46] 2025-11-27 14:43:13,206 | INFO     | pilot state: finished 
[2025-11-27 15:43:46] 2025-11-27 14:43:13,206 | INFO     | transexitcode: 0
[2025-11-27 15:43:46] 2025-11-27 14:43:13,206 | INFO     | exeerrorcode: 0
[2025-11-27 15:43:46] 2025-11-27 14:43:13,206 | INFO     | exeerrordiag: 
[2025-11-27 15:43:46] 2025-11-27 14:43:13,206 | INFO     | exitcode: 0
[2025-11-27 15:43:46] 2025-11-27 14:43:13,206 | INFO     | exitmsg: OK
[2025-11-27 15:43:46] 2025-11-27 14:43:13,207 | INFO     | cpuconsumptiontime: 99996 s
[2025-11-27 15:43:46] 2025-11-27 14:43:13,207 | INFO     | nevents: 1000
[2025-11-27 15:43:46] 2025-11-27 14:43:13,207 | INFO     | neventsw: 0
[2025-11-27 15:43:46] 2025-11-27 14:43:13,207 | INFO     | pid: 162985
[2025-11-27 15:43:46] 2025-11-27 14:43:13,207 | INFO     | pgrp: 162985
[2025-11-27 15:43:46] 2025-11-27 14:43:13,207 | INFO     | corecount: 3
[2025-11-27 15:43:46] 2025-11-27 14:43:13,207 | INFO     | event service: False
[2025-11-27 15:43:46] 2025-11-27 14:43:13,208 | INFO     | sizes: {0: 2284315, 6: 2284577, 11: 2284605, 33853: 2325913, 33855: 2334913, 33857: 2334969, 33866: 2335343}
[2025-11-27 15:43:46] 2025-11-27 14:43:13,208 | INFO     | --------------------------------------------------
[2025-11-27 15:43:46] 2025-11-27 14:43:13,208 | INFO     | 
[2025-11-27 15:43:46] 2025-11-27 14:43:13,208 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-11-27 15:43:46] 2025-11-27 14:43:13,222 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 15:43:46] 2025-11-27 14:43:13,222 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 15:43:46] 2025-11-27 14:43:13,222 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 15:43:46] 2025-11-27 14:43:13,222 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 15:43:46] 2025-11-27 14:43:13,222 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 15:43:46] 2025-11-27 14:43:13,222 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 15:43:46] 2025-11-27 14:43:13,222 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 15:43:46] 2025-11-27 14:43:13,223 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 15:43:46] 2025-11-27 14:43:13,223 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 15:43:46] 2025-11-27 14:43:13,223 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 15:43:46] 2025-11-27 14:43:13,223 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 15:43:46] 2025-11-27 14:43:13,223 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 15:43:46] 2025-11-27 14:43:13,223 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 15:43:46] 2025-11-27 14:43:13,223 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 15:43:46] 2025-11-27 14:43:13,223 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 15:43:46] 2025-11-27 14:43:13,223 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 15:43:46] 2025-11-27 14:43:13,223 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 15:43:46] 2025-11-27 14:43:13,223 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 15:43:46] 2025-11-27 14:43:13,223 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 15:43:46] 2025-11-27 14:43:13,223 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 15:43:46] 2025-11-27 14:43:13,223 | INFO     | job 6895334093 has completed (purged errors)
[2025-11-27 15:43:46] 2025-11-27 14:43:13,223 | INFO     | overall cleanup function is called
[2025-11-27 15:43:46] 2025-11-27 14:43:13,428 | INFO     | PID=156534 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 15:43:46] 2025-11-27 14:43:14,234 | INFO     | --- collectZombieJob: --- 10, [162985]
[2025-11-27 15:43:46] 2025-11-27 14:43:14,235 | INFO     | zombie collector waiting for pid 162985
[2025-11-27 15:43:46] 2025-11-27 14:43:14,235 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 15:43:46] 2025-11-27 14:43:14,235 | INFO     | collected zombie processes
[2025-11-27 15:43:46] 2025-11-27 14:43:14,235 | INFO     | will attempt to kill all subprocesses of pid=162985
[2025-11-27 15:43:46] 2025-11-27 14:43:14,289 | INFO     | process IDs to be killed: [162985] (in reverse order)
[2025-11-27 15:43:46] 2025-11-27 14:43:14,319 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 15:43:46] 2025-11-27 14:43:14,319 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 15:43:46] 2025-11-27 14:43:14,321 | INFO     | did not find any defunct processes belonging to 162985
[2025-11-27 15:43:46] 2025-11-27 14:43:14,322 | INFO     | did not find any defunct processes belonging to 162985
[2025-11-27 15:43:46] 2025-11-27 14:43:14,322 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 15:43:46] 2025-11-27 14:43:14,323 | INFO     | ready for new job
[2025-11-27 15:43:46] 2025-11-27 14:43:14,323 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 15:43:46] 2025-11-27 14:43:14,323 | INFO     | ***************************************
[2025-11-27 15:43:46] 2025-11-27 14:43:14,324 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 15:43:46] 2025-11-27 14:43:14,324 | INFO     | ***************************************
[2025-11-27 15:43:46] 2025-11-27 14:43:14,324 | INFO     | 
[2025-11-27 15:43:46] 2025-11-27 14:43:14,324 | INFO     | architecture information:
[2025-11-27 15:43:46] 2025-11-27 14:43:14,324 | INFO     | executing command: cat /etc/os-release
[2025-11-27 15:43:46] 2025-11-27 14:43:14,370 | INFO     | cat /etc/os-release:
[2025-11-27 15:43:46] NAME="CentOS Linux"
[2025-11-27 15:43:46] VERSION="7 (Core)"
[2025-11-27 15:43:46] ID="centos"
[2025-11-27 15:43:46] ID_LIKE="rhel fedora"
[2025-11-27 15:43:46] VERSION_ID="7"
[2025-11-27 15:43:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 15:43:46] ANSI_COLOR="0;31"
[2025-11-27 15:43:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 15:43:46] HOME_URL="https://www.centos.org/"
[2025-11-27 15:43:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 15:43:46] 
[2025-11-27 15:43:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 15:43:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 15:43:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 15:43:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 15:43:46] 
[2025-11-27 15:43:46] 2025-11-27 14:43:14,370 | INFO     | ***************************************
[2025-11-27 15:43:46] 2025-11-27 14:43:14,873 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 15:43:46] 2025-11-27 14:43:14,887 | INFO     | sufficient remaining disk space (324049829888 B)
[2025-11-27 15:43:46] 2025-11-27 14:43:14,887 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 15:43:46] 2025-11-27 14:43:14,887 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 15:43:46] 2025-11-27 14:43:14,887 | INFO     | update_server=False
[2025-11-27 15:43:46] 2025-11-27 14:43:14,887 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 15:43:46] 2025-11-27 14:43:14,887 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 15:43:46] 2025-11-27 14:43:15,115 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 15:43:46] 2025-11-27 14:43:15,293 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 15:43:46] 2025-11-27 14:43:15,294 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 15:43:46] 2025-11-27 14:43:15,294 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:43:46] 2025-11-27 14:43:15,294 | INFO     | will abort loop
[2025-11-27 15:43:46] 2025-11-27 14:43:15,394 | INFO     | all data control threads have been joined
[2025-11-27 15:43:46] 2025-11-27 14:43:15,504 | INFO     | all payload control threads have been joined
[2025-11-27 15:43:46] 2025-11-27 14:43:15,888 | INFO     | [job] retrieve thread has finished
[2025-11-27 15:43:46] 2025-11-27 14:43:16,134 | INFO     | all job control threads have been joined
[2025-11-27 15:43:46] 2025-11-27 14:43:16,170 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 15:43:46] 2025-11-27 14:43:16,174 | INFO     | [job] validate thread has finished
[2025-11-27 15:43:46] 2025-11-27 14:43:16,199 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 15:43:46] 2025-11-27 14:43:16,214 | INFO     | [payload] failed_post thread has finished
[2025-11-27 15:43:46] 2025-11-27 14:43:16,300 | INFO     | [job] job monitor thread has finished
[2025-11-27 15:43:46] 2025-11-27 14:43:16,400 | INFO     | [data] control thread has finished
[2025-11-27 15:43:46] 2025-11-27 14:43:16,510 | INFO     | [payload] control thread has finished
[2025-11-27 15:43:46] 2025-11-27 14:43:16,748 | INFO     | [data] copytool_in thread has finished
[2025-11-27 15:43:46] 2025-11-27 14:43:16,779 | INFO     | [payload] validate_post thread has finished
[2025-11-27 15:43:46] 2025-11-27 14:43:17,062 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 15:43:46] 2025-11-27 14:43:17,121 | INFO     | [data] copytool_out thread has finished
[2025-11-27 15:43:46] 2025-11-27 14:43:17,139 | INFO     | [job] control thread has finished
[2025-11-27 15:43:46] 2025-11-27 14:43:17,329 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 15:43:46] 2025-11-27 14:43:17,827 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:43:46] 2025-11-27 14:43:18,833 | INFO     | [job] queue monitor thread has finished
[2025-11-27 15:43:46] 2025-11-27 14:43:18,894 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 15:43:46] 2025-11-27 14:43:21,301 | INFO     | [monitor] cgroup control has ended
[2025-11-27 15:43:46] 2025-11-27 14:43:21,742 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140625287325504)>', '<ExcThread(monitor, started 140624770606848)>']
[2025-11-27 15:43:46] 2025-11-27 14:43:26,769 | INFO     | all workflow threads have been joined
[2025-11-27 15:43:46] 2025-11-27 14:43:26,770 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 15:43:46] 2025-11-27 14:43:26,770 | INFO     | traces error code: 0
[2025-11-27 15:43:46] 2025-11-27 14:43:26,771 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 15:43:46] 2025-11-27 14:43:45,565 | INFO     | PID=156534 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 15:43:46] 2025-11-27 14:43:45,565 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 15:43:46] 2025-11-27 14:43:45,565 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 15:43:46] 2025-11-27 14:43:45,565 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 15:43:46] 2025-11-27 14:43:45,565 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 15:43:46] 2025-11-27 14:43:45,565 | INFO     | [monitor] control thread has ended
[2025-11-27 15:43:46] 2025-11-27 14:43:45,892 [wrapper] ==== pilot stdout END ====
[2025-11-27 15:43:46] 2025-11-27 14:43:45,904 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 15:43:46] 2025-11-27 14:43:45,915 [wrapper] pilotpid: 156534
[2025-11-27 15:43:46] 2025-11-27 14:43:45,925 [wrapper] Pilot exit status: 0
[2025-11-27 15:43:46] 2025-11-27 14:43:45,977 [wrapper] pandaids: 6895334093
[2025-11-27 15:43:46] 2025-11-27 14:43:46,041 [wrapper] cleanup supervisor_pilot  230518 156535
[2025-11-27 15:43:46] 2025-11-27 14:43:46,046 [wrapper] Test setup, not cleaning
[2025-11-27 15:43:46] 2025-11-27 14:43:46,050 [wrapper] apfmon messages muted
[2025-11-27 15:43:46] 2025-11-27 14:43:46,054 [wrapper] ==== wrapper stdout END ====
[2025-11-27 15:43:46] 2025-11-27 14:43:46,059 [wrapper] ==== wrapper stderr END ====
[2025-11-27 15:43:46]  *** Error codes and diagnostics ***
[2025-11-27 15:43:46]     "exeErrorCode": 0,
[2025-11-27 15:43:46]     "exeErrorDiag": "",
[2025-11-27 15:43:46]     "pilotErrorCode": 0,
[2025-11-27 15:43:46]     "pilotErrorDiag": "",
[2025-11-27 15:43:46]  *** Listing of results directory ***
[2025-11-27 15:43:46] total 1314708
[2025-11-27 15:43:46] -rw-r--r-- 1 boinc boinc    576529 Nov 22 03:10 pilot3.tar.gz
[2025-11-27 15:43:46] -rw-r--r-- 1 boinc boinc      5112 Nov 22 03:32 queuedata.json
[2025-11-27 15:43:46] -rwx------ 1 boinc boinc     36292 Nov 22 03:36 runpilot2-wrapper.sh
[2025-11-27 15:43:46] -rw-r--r-- 1 boinc boinc       100 Nov 27 06:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 15:43:46] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 06:18 run_atlas
[2025-11-27 15:43:46] -rw-r--r-- 1 boinc boinc       105 Nov 27 06:18 job.xml
[2025-11-27 15:43:46] -rw-r--r-- 2 boinc boinc 409592414 Nov 27 06:18 EVNT.47483658._001058.pool.root.1
[2025-11-27 15:43:46] drwxrwx--x 2 boinc boinc      4096 Nov 27 06:18 shared
[2025-11-27 15:43:46] -rw-r--r-- 2 boinc boinc    590105 Nov 27 06:18 input.tar.gz
[2025-11-27 15:43:46] -rw-r--r-- 2 boinc boinc     15847 Nov 27 06:18 start_atlas.sh
[2025-11-27 15:43:46] -rw-r--r-- 1 boinc boinc         0 Nov 27 06:18 boinc_setup_complete
[2025-11-27 15:43:46] -rw-r--r-- 1 boinc boinc      6198 Nov 27 06:18 init_data.xml
[2025-11-27 15:43:46] -rw-r--r-- 1 boinc boinc         0 Nov 27 06:18 boinc_lockfile
[2025-11-27 15:43:46] -rw-r--r-- 1 boinc boinc      2784 Nov 27 06:18 pandaJob.out
[2025-11-27 15:43:46] -rw------- 1 boinc boinc    991570 Nov 27 06:18 agis_schedconf.cvmfs.json
[2025-11-27 15:43:46] drwx------ 5 boinc boinc      4096 Nov 27 06:18 pilot3
[2025-11-27 15:43:46] -rw-r--r-- 1 boinc boinc       533 Nov 27 15:39 boinc_task_state.xml
[2025-11-27 15:43:46] -rw------- 1 boinc boinc 920785162 Nov 27 15:42 HITS.47556149._000448.pool.root.1
[2025-11-27 15:43:46] -rw------- 1 boinc boinc        95 Nov 27 15:42 pilot_heartbeat.json
[2025-11-27 15:43:46] -rw------- 1 boinc boinc      1066 Nov 27 15:42 memory_monitor_summary.json
[2025-11-27 15:43:46] -rw------- 1 boinc boinc   1516240 Nov 27 15:43 agis_ddmendpoints.agis.ALL.json
[2025-11-27 15:43:46] -rw------- 1 boinc boinc   1239609 Nov 27 15:43 log.47556149._000448.job.log.tgz.1
[2025-11-27 15:43:46] -rw------- 1 boinc boinc      8631 Nov 27 15:43 heartbeat.json
[2025-11-27 15:43:46] -rw-r--r-- 1 boinc boinc      8192 Nov 27 15:43 boinc_mmap_file
[2025-11-27 15:43:46] -rw-r--r-- 1 boinc boinc        29 Nov 27 15:43 wrapper_checkpoint.txt
[2025-11-27 15:43:46] -rw------- 1 boinc boinc       746 Nov 27 15:43 pilotlog.txt
[2025-11-27 15:43:46] -rw------- 1 boinc boinc   4743932 Nov 27 15:43 log.47556149._000448.job.log.1
[2025-11-27 15:43:46] -rw------- 1 boinc boinc       353 Nov 27 15:43 output.list
[2025-11-27 15:43:46] -rw-r--r-- 1 boinc boinc       620 Nov 27 15:43 runtime_log
[2025-11-27 15:43:46] -rw------- 1 boinc boinc   6000640 Nov 27 15:43 result.tar.gz
[2025-11-27 15:43:46] -rw-r--r-- 1 boinc boinc      8903 Nov 27 15:43 runtime_log.err
[2025-11-27 15:43:46] -rw------- 1 boinc boinc       673 Nov 27 15:43 XNoLDm2esg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmsuHKDmFeMsIm.diag
[2025-11-27 15:43:46] -rw-r--r-- 1 boinc boinc     21764 Nov 27 15:43 stderr.txt
[2025-11-27 15:43:46] HITS file was successfully produced:
[2025-11-27 15:43:46] -rw------- 1 boinc boinc 920785162 Nov 27 15:42 shared/HITS.pool.root.1
[2025-11-27 15:43:46]  *** Contents of shared directory: ***
[2025-11-27 15:43:46] total 1305668
[2025-11-27 15:43:46] -rw-r--r-- 2 boinc boinc 409592414 Nov 27 06:18 ATLAS.root_0
[2025-11-27 15:43:46] -rw-r--r-- 2 boinc boinc    590105 Nov 27 06:18 input.tar.gz
[2025-11-27 15:43:46] -rw-r--r-- 2 boinc boinc     15847 Nov 27 06:18 start_atlas.sh
[2025-11-27 15:43:46] -rw------- 1 boinc boinc 920785162 Nov 27 15:42 HITS.pool.root.1
[2025-11-27 15:43:46] -rw------- 1 boinc boinc   6000640 Nov 27 15:43 result.tar.gz
15:43:47 (152799): run_atlas exited; CPU time 100111.029864
15:43:47 (152799): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN